Wall clock time and date at job start Wed Apr 1 2020 03:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47628 * 2 1 4 4 F 1.39907 * 109.47161 * 239.99857 * 2 1 3 5 5 C 1.53001 * 109.47096 * 119.99959 * 2 1 3 6 6 C 1.52997 * 109.47125 * 184.99731 * 5 2 1 7 7 N 1.46902 * 109.47426 * 179.97438 * 6 5 2 8 8 C 1.46807 * 111.00277 * 189.99902 * 7 6 5 9 9 C 1.53265 * 109.44634 * 170.79733 * 8 7 6 10 10 C 1.53219 * 108.61669 * 55.59426 * 9 8 7 11 11 C 1.52738 * 117.84517 * 162.99698 * 10 9 8 12 12 C 1.52765 * 117.79341 * 93.99491 * 10 9 8 13 13 H 1.09000 * 117.53134 * 0.36997 * 12 10 9 14 14 N 1.46499 * 117.50669 * 215.29329 * 12 10 9 15 15 C 1.34773 * 119.99849 * 155.06683 * 14 12 10 16 16 O 1.21283 * 120.00144 * 359.97438 * 15 14 12 17 17 C 1.50705 * 119.99721 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.46942 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00017 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00294 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00153 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00093 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00020 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 90.00077 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00257 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00251 * 23 21 19 27 27 C 1.53224 * 114.74322 * 308.58263 * 10 9 8 28 28 C 1.46815 * 110.99681 * 65.30066 * 7 6 5 29 29 H 1.09004 * 109.46730 * 300.00594 * 1 2 3 30 30 H 1.08997 * 109.46879 * 60.00126 * 1 2 3 31 31 H 1.08993 * 109.47609 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47256 * 65.00196 * 5 2 1 33 33 H 1.08996 * 109.47188 * 304.99381 * 5 2 1 34 34 H 1.09002 * 109.47413 * 60.00083 * 6 5 2 35 35 H 1.09003 * 109.47373 * 299.99604 * 6 5 2 36 36 H 1.08999 * 109.47496 * 50.80693 * 8 7 6 37 37 H 1.08995 * 109.48145 * 290.79145 * 8 7 6 38 38 H 1.09000 * 109.61232 * 295.85869 * 9 8 7 39 39 H 1.09005 * 109.75833 * 175.41894 * 9 8 7 40 40 H 1.09000 * 117.51004 * 144.78406 * 11 10 9 41 41 H 1.09007 * 117.52703 * 359.72050 * 11 10 9 42 42 H 0.97000 * 119.99965 * 335.06471 * 14 12 10 43 43 H 1.08997 * 109.46935 * 60.00104 * 17 15 14 44 44 H 1.09000 * 109.47082 * 299.99666 * 17 15 14 45 45 H 0.97006 * 119.99745 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.61379 * 171.15483 * 27 10 9 47 47 H 1.08998 * 109.61108 * 291.67847 * 27 10 9 48 48 H 1.08996 * 109.47754 * 309.19240 * 28 7 6 49 49 H 1.08992 * 109.47548 * 69.21143 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7212 1.2493 6 6 3.5648 -0.6133 1.3137 7 7 4.0544 -1.3053 2.5134 8 6 5.4780 -1.0255 2.7381 9 6 5.8947 -1.5690 4.1092 10 6 5.5483 -3.0602 4.1701 11 6 6.2129 -3.9032 5.2566 12 6 6.6401 -4.0610 3.7955 13 1 7.6131 -3.6615 3.5096 14 7 6.2285 -5.2819 3.0984 15 6 7.1064 -5.9390 2.3149 16 8 8.2370 -5.5193 2.1866 17 6 6.6831 -7.1953 1.5981 18 16 8.0742 -7.8381 0.6348 19 6 7.3207 -9.2628 -0.0774 20 1 6.2895 -9.4957 0.1434 21 6 8.0528 -10.0863 -0.9215 22 7 7.4901 -11.1509 -1.4531 23 14 9.8366 -9.6839 -1.3029 24 1 10.7170 -10.3420 -0.3043 25 1 10.0356 -8.2134 -1.2453 26 1 10.1755 -10.1763 -2.6623 27 6 4.1050 -3.3997 3.7837 28 6 3.7941 -2.7479 2.4318 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4369 1.3573 35 1 3.9994 -1.0730 0.4260 36 1 5.6459 0.0511 2.7076 37 1 6.0704 -1.5079 1.9606 38 1 5.3564 -1.0361 4.8930 39 1 6.9678 -1.4366 4.2474 40 1 5.6258 -4.7079 5.6992 41 1 6.9050 -3.4000 5.9319 42 1 5.3241 -5.6174 3.2007 43 1 5.8516 -6.9701 0.9305 44 1 6.3711 -7.9424 2.3280 45 1 8.0017 -11.7262 -2.0433 46 1 3.9924 -4.4808 3.7031 47 1 3.4230 -3.0138 4.5414 48 1 2.7468 -2.9145 2.1803 49 1 4.4274 -3.1884 1.6618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265324241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:25 Heat of formation + Delta-G solvation = -74.238417 kcal Electronic energy + Delta-G solvation = -27813.093779 eV Core-core repulsion = 23815.748816 eV Total energy + Delta-G solvation = -3997.344964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.92665 -40.37676 -38.87522 -37.15701 -34.45970 -33.09043 -32.44371 -31.30254 -30.87230 -29.18262 -27.90198 -25.62597 -24.07433 -23.53837 -22.41911 -21.88148 -21.15078 -20.45522 -19.00059 -17.83102 -17.04769 -16.69148 -16.58862 -15.97809 -15.65140 -15.25515 -15.11928 -15.04012 -14.97878 -14.59751 -14.39419 -14.15916 -13.77485 -13.53503 -13.30248 -13.09634 -12.96800 -12.79986 -12.73328 -12.59448 -12.43497 -12.35446 -11.97322 -11.82746 -11.49807 -11.40546 -11.27598 -11.18052 -11.02973 -11.01394 -10.80521 -10.63161 -10.59048 -9.99623 -9.84899 -9.55241 -9.01130 -8.66644 -8.58942 -8.51566 -6.92957 -6.29601 -4.01491 2.71120 2.84106 3.24371 3.32844 3.44559 3.50024 3.61462 3.68499 4.16651 4.30978 4.32497 4.37054 4.43177 4.44455 4.53916 4.58731 4.66532 4.70749 4.76572 4.91767 4.99552 5.09473 5.11784 5.15741 5.18250 5.20272 5.27136 5.34225 5.36199 5.39668 5.50121 5.53359 5.59598 5.59971 5.71966 5.73307 5.74051 5.75846 5.81600 5.87406 5.98149 5.98772 6.00184 6.55541 6.76360 6.79360 7.56255 7.93464 8.40882 8.45029 9.16519 10.79620 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.002454 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.150889 B =11405.117473 C =13246.886417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.082 0.918 4 F -0.214 7.214 5 C -0.144 4.144 6 C 0.053 3.947 7 N -0.537 5.537 8 C 0.058 3.942 9 C -0.074 4.074 10 C -0.133 4.133 11 C -0.184 4.184 12 C 0.096 3.904 13 H 0.135 0.865 14 N -0.707 5.707 15 C 0.535 3.465 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.140 6.140 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.235 1.235 26 H -0.274 1.274 27 C -0.075 4.075 28 C 0.054 3.946 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 25.011 11.688 30.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.050 3.950 3 H 0.100 0.900 4 F -0.195 7.195 5 C -0.182 4.182 6 C -0.075 4.075 7 N -0.261 5.261 8 C -0.070 4.070 9 C -0.112 4.112 10 C -0.134 4.134 11 C -0.223 4.223 12 C -0.011 4.011 13 H 0.152 0.848 14 N -0.360 5.360 15 C 0.321 3.679 16 O -0.392 6.392 17 C -0.275 4.275 18 S 0.086 5.914 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.159 1.159 26 H -0.199 1.199 27 C -0.113 4.113 28 C -0.074 4.074 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.756 25.677 11.694 30.566 hybrid contribution -0.637 -1.189 -0.796 1.566 sum -12.393 24.488 10.898 29.530 Atomic orbital electron populations 1.22367 0.94228 1.03722 1.03403 1.21568 0.94874 0.96249 0.82263 0.90008 1.92843 1.90253 1.83360 1.53060 1.22249 0.96117 1.02255 0.97553 1.22075 0.94638 0.99229 0.91580 1.61780 1.17324 1.09698 1.37341 1.22073 0.87522 1.00387 0.97044 1.21162 1.00686 0.92160 0.97147 1.22001 0.94341 0.93431 1.03675 1.23551 1.03755 1.02466 0.92518 1.21703 0.98557 0.87343 0.93487 0.84752 1.45441 1.15304 1.26182 1.49031 1.20296 0.85005 0.84590 0.78003 1.90691 1.19493 1.67169 1.61820 1.23279 1.04951 0.96827 1.02430 1.84792 1.16090 1.32440 1.58055 1.22312 1.01898 1.09217 1.33485 0.89379 1.24715 0.98710 0.93781 0.94117 1.69941 1.37333 1.13768 1.30619 0.86735 0.84645 0.81855 0.78616 1.19185 1.15933 1.19919 1.21108 0.93750 0.99326 0.97094 1.22146 1.01097 0.87245 0.96905 0.90641 0.91441 0.91326 0.90502 0.89267 0.90674 0.94112 0.90731 0.94398 0.90516 0.91094 0.88473 0.88075 0.76550 0.88461 0.88437 0.91927 0.91650 0.90486 0.90451 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 9.65 37.16 0.36 -0.57 16 2 C 0.09 0.58 3.96 -26.73 -0.11 0.47 16 3 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 4 F -0.21 -2.21 16.76 2.25 0.04 -2.17 16 5 C -0.14 -0.94 4.91 -26.73 -0.13 -1.08 16 6 C 0.05 0.42 4.88 -3.82 -0.02 0.40 16 7 N -0.54 -4.58 4.59 -234.44 -1.08 -5.65 16 8 C 0.06 0.50 5.49 -3.74 -0.02 0.48 16 9 C -0.07 -0.59 5.87 -26.48 -0.16 -0.75 16 10 C -0.13 -1.17 2.02 -154.54 -0.31 -1.49 16 11 C -0.18 -1.64 9.93 -26.84 -0.27 -1.91 16 12 C 0.10 1.10 6.11 -68.03 -0.42 0.69 16 13 H 0.13 1.81 7.40 -51.93 -0.38 1.42 16 14 N -0.71 -9.17 5.35 -53.90 -0.29 -9.45 16 15 C 0.53 9.54 7.85 -10.98 -0.09 9.45 16 16 O -0.52 -11.20 15.43 5.56 0.09 -11.11 16 17 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 18 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 19 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 20 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 23 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.07 -0.61 5.67 -26.48 -0.15 -0.76 16 28 C 0.05 0.48 5.35 -3.73 -0.02 0.46 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.56 6.36 -51.93 -0.33 0.23 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 35 H 0.04 0.40 7.92 -51.93 -0.41 -0.01 16 36 H 0.07 0.55 7.95 -51.93 -0.41 0.14 16 37 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.40 4.16 6.85 -40.82 -0.28 3.88 16 43 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.07 0.50 6.18 -51.93 -0.32 0.18 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.63 6.07 -51.93 -0.32 0.32 16 49 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -33.91 403.59 -10.33 -44.24 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.36 Total: 1.18 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.89 Total: -8.85 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.59 Total: -41.00 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.91 -10.33 -44.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265324241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.994 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds