Wall clock time and date at job start Wed Apr 1 2020 04:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00395 * 2 1 4 4 H 1.48501 * 109.47187 * 270.00454 * 3 2 1 5 5 H 1.48504 * 109.46973 * 30.00238 * 3 2 1 6 6 H 1.48504 * 109.47318 * 150.00189 * 3 2 1 7 7 C 1.38813 * 119.99363 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.47746 * 125.82344 * 346.81204 * 9 7 2 11 11 C 1.54909 * 104.84438 * 204.24617 * 10 9 7 12 12 C 1.55156 * 101.58498 * 322.91096 * 11 10 9 13 13 C 1.47031 * 125.65189 * 166.81482 * 9 7 2 14 14 H 1.09001 * 109.88006 * 59.32397 * 13 9 7 15 15 C 1.53002 * 109.87631 * 298.31415 * 13 9 7 16 16 C 1.53006 * 109.46485 * 176.67721 * 15 13 9 17 17 C 1.53006 * 109.46819 * 185.08237 * 16 15 13 18 18 N 1.46501 * 109.46939 * 179.97438 * 17 16 15 19 19 C 1.34776 * 119.99945 * 180.27733 * 18 17 16 20 20 O 1.21568 * 119.99628 * 359.72637 * 19 18 17 21 21 C 1.47716 * 120.00128 * 179.72889 * 19 18 17 22 22 C 1.40116 * 120.35267 * 359.97438 * 21 19 18 23 23 N 1.31254 * 121.15118 * 179.97438 * 22 21 19 24 24 C 1.32716 * 121.80260 * 0.03352 * 23 22 21 25 25 N 1.37117 * 133.40758 * 180.02562 * 24 23 22 26 26 H 0.97007 * 126.58894 * 359.97438 * 25 24 23 27 27 N 1.40182 * 106.82104 * 179.97438 * 25 24 23 28 28 N 1.28668 * 109.51392 * 359.97438 * 27 25 24 29 29 C 1.35335 * 109.99424 * 0.02562 * 28 27 25 30 30 C 1.39432 * 120.35383 * 179.72340 * 21 19 18 31 31 H 0.96998 * 119.99635 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.43345 * 85.37185 * 10 9 7 33 33 H 1.08999 * 110.29066 * 323.05527 * 10 9 7 34 34 H 1.08995 * 111.00387 * 204.82995 * 11 10 9 35 35 H 1.09009 * 111.03330 * 80.99641 * 11 10 9 36 36 H 1.09008 * 110.71737 * 277.13904 * 12 11 10 37 37 H 1.08992 * 110.72349 * 153.86231 * 12 11 10 38 38 H 1.08998 * 109.47227 * 56.68001 * 15 13 9 39 39 H 1.08994 * 109.47427 * 296.67914 * 15 13 9 40 40 H 1.09004 * 109.47127 * 65.08670 * 16 15 13 41 41 H 1.08995 * 109.47093 * 305.08082 * 16 15 13 42 42 H 1.09004 * 109.46918 * 60.00304 * 17 16 15 43 43 H 1.09003 * 109.47131 * 300.00471 * 17 16 15 44 44 H 0.97003 * 120.00006 * 0.02562 * 18 17 16 45 45 H 1.08001 * 119.42247 * 359.97438 * 22 21 19 46 46 H 1.07997 * 120.94897 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2024 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1170 -2.5538 0.2733 11 6 -0.2625 -4.0162 0.7628 12 6 0.7702 -4.7491 -0.1336 13 6 1.9042 -3.7118 -0.2736 14 1 2.6940 -3.9267 0.4462 15 6 2.4709 -3.7488 -1.6943 16 6 3.1436 -5.1009 -1.9398 17 6 3.8197 -5.0923 -3.3124 18 7 4.4644 -6.3868 -3.5473 19 6 5.1311 -6.6087 -4.6973 20 8 5.1933 -5.7364 -5.5418 21 6 5.7862 -7.9117 -4.9316 22 6 5.7196 -8.9221 -3.9631 23 7 6.2954 -10.0858 -4.1551 24 6 6.9646 -10.3598 -5.2680 25 7 7.6421 -11.4662 -5.7118 26 1 7.7516 -12.3058 -5.2383 27 7 8.1463 -11.1510 -6.9813 28 7 7.8062 -9.9498 -7.2927 29 6 7.0800 -9.4002 -6.2916 30 6 6.4731 -8.1513 -6.1212 31 1 -0.4849 0.8401 0.0004 32 1 -0.6972 -2.3987 -0.6363 33 1 -0.4362 -1.8599 1.0509 34 1 -1.2706 -4.3898 0.5832 35 1 0.0026 -4.1044 1.8165 36 1 0.3389 -4.9826 -1.1071 37 1 1.1328 -5.6531 0.3556 38 1 3.2040 -2.9512 -1.8139 39 1 1.6623 -3.6096 -2.4118 40 1 2.3932 -5.8910 -1.9094 41 1 3.8915 -5.2802 -1.1675 42 1 4.5701 -4.3023 -3.3428 43 1 3.0718 -4.9129 -4.0847 44 1 4.4144 -7.0828 -2.8735 45 1 5.1850 -8.7400 -3.0425 46 1 6.5375 -7.3932 -6.8877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266219155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:56 Heat of formation + Delta-G solvation = 105.563936 kcal Electronic energy + Delta-G solvation = -28341.600126 eV Core-core repulsion = 24268.820739 eV Total energy + Delta-G solvation = -4072.779387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.96257 -40.38962 -38.70867 -37.84105 -35.72645 -34.58014 -33.15051 -32.35351 -32.22793 -31.16302 -29.40083 -28.14944 -25.68853 -25.17378 -24.59144 -23.68133 -23.27162 -21.63572 -21.24733 -20.14345 -19.31907 -19.22913 -18.86280 -17.56098 -17.01425 -16.72719 -16.70786 -15.87202 -15.73314 -15.09007 -14.67464 -14.52167 -14.36104 -14.03923 -13.86747 -13.77478 -13.57982 -13.11801 -12.92437 -12.55038 -12.39051 -12.11066 -12.06685 -11.92817 -11.73426 -11.48985 -11.04949 -10.85248 -10.80032 -10.61707 -10.59336 -10.10969 -10.06011 -9.99667 -9.95922 -9.77862 -9.70164 -9.61543 -9.60700 -9.26702 -8.57424 -6.76963 -5.72562 -3.07372 -0.40411 0.02337 1.39641 1.46471 2.32570 2.67998 3.13476 3.24857 3.40343 3.45880 3.47127 3.61403 3.65854 3.98927 4.06892 4.40001 4.49973 4.67997 4.94521 5.09754 5.12408 5.18702 5.33875 5.44417 5.48435 5.58355 5.59190 5.70973 5.83140 5.90252 5.97464 6.04414 6.06794 6.20131 6.28965 6.33554 6.40980 6.56133 6.68914 6.71932 6.82857 6.94316 7.13297 7.16160 7.18385 7.56581 7.63480 7.82047 7.84504 8.30766 9.21753 9.83759 10.52891 11.39582 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.001743 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.843023 B =16056.146428 C =17010.774465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.151 4.151 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.122 4.122 16 C -0.128 4.128 17 C 0.118 3.882 18 N -0.720 5.720 19 C 0.566 3.434 20 O -0.528 6.528 21 C -0.205 4.205 22 C 0.214 3.786 23 N -0.487 5.487 24 C 0.294 3.706 25 N -0.482 5.482 26 H 0.455 0.545 27 N 0.020 4.980 28 N -0.190 5.190 29 C -0.074 4.074 30 C 0.085 3.915 31 H 0.252 0.748 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.398 0.602 45 H 0.180 0.820 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 -23.544 -7.108 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.046 3.954 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.054 3.946 14 H 0.048 0.952 15 C -0.163 4.163 16 C -0.167 4.167 17 C -0.005 4.005 18 N -0.372 5.372 19 C 0.351 3.649 20 O -0.404 6.404 21 C -0.214 4.214 22 C 0.041 3.959 23 N -0.201 5.201 24 C 0.049 3.951 25 N -0.208 5.208 26 H 0.303 0.697 27 N 0.037 4.963 28 N -0.071 5.071 29 C -0.199 4.199 30 C 0.054 3.946 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.234 0.766 45 H 0.197 0.803 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.451 -23.815 -8.345 27.711 hybrid contribution 0.022 0.838 0.794 1.154 sum 11.473 -22.977 -7.551 26.769 Atomic orbital electron populations 1.69934 1.04962 1.25064 1.56594 1.24877 0.95667 0.97739 1.02046 0.86176 0.78677 0.83637 0.77621 1.21539 1.21751 1.20687 1.18959 0.90301 0.82340 1.43750 0.90769 1.44617 1.05351 1.01000 1.81113 1.21485 0.85024 0.90210 0.98641 1.23010 0.97416 0.99779 0.98718 1.22591 0.97126 0.97101 0.99396 1.20921 0.93814 0.86983 0.92833 0.95185 1.22035 1.00099 0.94230 0.99896 1.21860 0.99763 1.00386 0.94685 1.21611 0.97023 0.83524 0.98342 1.45993 1.54476 1.17868 1.18817 1.17683 0.78752 0.86053 0.82432 1.90844 1.60303 1.45096 1.44206 1.20815 1.06170 0.97365 0.97089 1.23099 0.90187 0.85285 0.97378 1.66690 1.11412 1.22399 1.19596 1.19599 0.94591 0.88523 0.92416 1.47569 1.42854 1.14266 1.16061 0.69670 1.81771 1.13743 1.08366 0.92394 1.74930 1.08785 1.01354 1.22036 1.20413 1.07502 0.97918 0.94115 1.21121 0.85390 0.92596 0.95464 0.93756 0.95932 0.91025 0.92582 0.92504 0.92038 0.92640 0.91633 0.92134 0.91553 0.91600 0.90918 0.90981 0.76642 0.80303 0.81446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.54 55.49 0.59 -26.01 16 2 C -0.01 -0.19 5.47 -17.43 -0.10 -0.28 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.05 9.75 -15.06 -0.15 -6.20 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.60 -14.51 3.14 -162.31 -0.51 -15.02 16 10 C 0.17 4.04 5.46 -2.35 -0.01 4.03 16 11 C -0.15 -2.72 7.08 -24.58 -0.17 -2.90 16 12 C -0.12 -1.98 5.61 -24.90 -0.14 -2.12 16 13 C 0.16 3.05 3.18 -66.95 -0.21 2.84 16 14 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 15 C -0.12 -1.99 4.69 -26.73 -0.13 -2.12 16 16 C -0.13 -1.42 5.07 -26.72 -0.14 -1.56 16 17 C 0.12 1.28 5.67 -4.04 -0.02 1.26 16 18 N -0.72 -5.99 5.51 -61.28 -0.34 -6.32 16 19 C 0.57 5.69 7.77 -12.39 -0.10 5.59 16 20 O -0.53 -7.47 16.39 5.31 0.09 -7.39 16 21 C -0.21 -1.61 5.88 -104.88 -0.62 -2.22 16 22 C 0.21 1.29 10.69 -17.09 -0.18 1.10 16 23 N -0.49 -3.65 10.37 -12.03 -0.12 -3.78 16 24 C 0.29 2.42 8.49 -155.93 -1.32 1.09 16 25 N -0.48 -3.17 7.52 31.15 0.23 -2.93 16 26 H 0.45 1.38 8.96 -182.53 -1.64 -0.26 16 27 N 0.02 0.18 13.82 60.35 0.83 1.01 16 28 N -0.19 -1.91 12.40 32.17 0.40 -1.51 16 29 C -0.07 -0.68 7.27 -84.74 -0.62 -1.30 16 30 C 0.09 0.72 9.75 -38.51 -0.38 0.35 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.02 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.07 1.90 6.83 -51.93 -0.35 1.55 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.06 0.93 7.79 -51.92 -0.40 0.53 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.19 7.89 -51.93 -0.41 0.78 16 39 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 40 H 0.07 0.65 7.57 -51.93 -0.39 0.26 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.40 1.96 6.51 -40.82 -0.27 1.69 16 45 H 0.18 0.43 6.39 -52.49 -0.34 0.10 16 46 H 0.17 1.35 7.71 -52.49 -0.40 0.95 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -33.90 381.40 -9.93 -43.84 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.55 Total: -2.02 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -4.28 Total: -2.44 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 1.08 Total: -54.56 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.39 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.90 -9.93 -43.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266219155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.403 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds