Wall clock time and date at job start Wed Apr 1 2020 04:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00395 * 2 1 4 4 H 1.48501 * 109.47187 * 270.00454 * 3 2 1 5 5 H 1.48504 * 109.46973 * 30.00238 * 3 2 1 6 6 H 1.48504 * 109.47318 * 150.00189 * 3 2 1 7 7 C 1.38813 * 119.99363 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.47746 * 125.82344 * 346.81204 * 9 7 2 11 11 C 1.54909 * 104.84438 * 204.24617 * 10 9 7 12 12 C 1.55156 * 101.58498 * 322.91096 * 11 10 9 13 13 C 1.47031 * 125.65189 * 166.81482 * 9 7 2 14 14 H 1.09001 * 109.88006 * 59.32397 * 13 9 7 15 15 C 1.53002 * 109.87631 * 298.31415 * 13 9 7 16 16 C 1.53006 * 109.46485 * 176.67721 * 15 13 9 17 17 C 1.53006 * 109.46819 * 185.08237 * 16 15 13 18 18 N 1.46501 * 109.46939 * 179.97438 * 17 16 15 19 19 C 1.34776 * 119.99945 * 180.27733 * 18 17 16 20 20 O 1.21568 * 119.99628 * 359.72637 * 19 18 17 21 21 C 1.47716 * 120.00128 * 179.72889 * 19 18 17 22 22 C 1.40116 * 120.35267 * 359.97438 * 21 19 18 23 23 N 1.31254 * 121.15118 * 179.97438 * 22 21 19 24 24 C 1.32716 * 121.80260 * 0.03352 * 23 22 21 25 25 N 1.37117 * 133.40758 * 180.02562 * 24 23 22 26 26 H 0.97007 * 126.58894 * 359.97438 * 25 24 23 27 27 N 1.40182 * 106.82104 * 179.97438 * 25 24 23 28 28 N 1.28668 * 109.51392 * 359.97438 * 27 25 24 29 29 C 1.35335 * 109.99424 * 0.02562 * 28 27 25 30 30 C 1.39432 * 120.35383 * 179.72340 * 21 19 18 31 31 H 0.96998 * 119.99635 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.43345 * 85.37185 * 10 9 7 33 33 H 1.08999 * 110.29066 * 323.05527 * 10 9 7 34 34 H 1.08995 * 111.00387 * 204.82995 * 11 10 9 35 35 H 1.09009 * 111.03330 * 80.99641 * 11 10 9 36 36 H 1.09008 * 110.71737 * 277.13904 * 12 11 10 37 37 H 1.08992 * 110.72349 * 153.86231 * 12 11 10 38 38 H 1.08998 * 109.47227 * 56.68001 * 15 13 9 39 39 H 1.08994 * 109.47427 * 296.67914 * 15 13 9 40 40 H 1.09004 * 109.47127 * 65.08670 * 16 15 13 41 41 H 1.08995 * 109.47093 * 305.08082 * 16 15 13 42 42 H 1.09004 * 109.46918 * 60.00304 * 17 16 15 43 43 H 1.09003 * 109.47131 * 300.00471 * 17 16 15 44 44 H 0.97003 * 120.00006 * 0.02562 * 18 17 16 45 45 H 1.08001 * 119.42247 * 359.97438 * 22 21 19 46 46 H 1.07997 * 120.94897 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2024 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1170 -2.5538 0.2733 11 6 -0.2625 -4.0162 0.7628 12 6 0.7702 -4.7491 -0.1336 13 6 1.9042 -3.7118 -0.2736 14 1 2.6940 -3.9267 0.4462 15 6 2.4709 -3.7488 -1.6943 16 6 3.1436 -5.1009 -1.9398 17 6 3.8197 -5.0923 -3.3124 18 7 4.4644 -6.3868 -3.5473 19 6 5.1311 -6.6087 -4.6973 20 8 5.1933 -5.7364 -5.5418 21 6 5.7862 -7.9117 -4.9316 22 6 5.7196 -8.9221 -3.9631 23 7 6.2954 -10.0858 -4.1551 24 6 6.9646 -10.3598 -5.2680 25 7 7.6421 -11.4662 -5.7118 26 1 7.7516 -12.3058 -5.2383 27 7 8.1463 -11.1510 -6.9813 28 7 7.8062 -9.9498 -7.2927 29 6 7.0800 -9.4002 -6.2916 30 6 6.4731 -8.1513 -6.1212 31 1 -0.4849 0.8401 0.0004 32 1 -0.6972 -2.3987 -0.6363 33 1 -0.4362 -1.8599 1.0509 34 1 -1.2706 -4.3898 0.5832 35 1 0.0026 -4.1044 1.8165 36 1 0.3389 -4.9826 -1.1071 37 1 1.1328 -5.6531 0.3556 38 1 3.2040 -2.9512 -1.8139 39 1 1.6623 -3.6096 -2.4118 40 1 2.3932 -5.8910 -1.9094 41 1 3.8915 -5.2802 -1.1675 42 1 4.5701 -4.3023 -3.3428 43 1 3.0718 -4.9129 -4.0847 44 1 4.4144 -7.0828 -2.8735 45 1 5.1850 -8.7400 -3.0425 46 1 6.5375 -7.3932 -6.8877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266219155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:55 Heat of formation + Delta-G solvation = 81.224222 kcal Electronic energy + Delta-G solvation = -28342.655575 eV Core-core repulsion = 24268.820739 eV Total energy + Delta-G solvation = -4073.834836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.57394 -41.14999 -39.50904 -39.25106 -36.72891 -35.20421 -34.68761 -33.74791 -32.90403 -31.91559 -31.17397 -29.41481 -26.75611 -26.29489 -25.79378 -24.80212 -23.89579 -22.67154 -22.06036 -21.81638 -20.70854 -19.88652 -19.62298 -18.68230 -18.10552 -17.69407 -17.34157 -16.95357 -16.69842 -16.59437 -16.00666 -15.68583 -15.49569 -15.20792 -14.85654 -14.43619 -14.34176 -14.15778 -13.83865 -13.76345 -13.64970 -13.51285 -13.18119 -13.07351 -12.93789 -12.72888 -12.71359 -12.61970 -12.18036 -11.97011 -11.75338 -11.66884 -11.51754 -11.39707 -11.23875 -11.06723 -10.75592 -10.62630 -10.56266 -10.39106 -10.03664 -8.73873 -7.81517 -5.16193 -0.99944 -0.59533 0.83806 0.87397 1.46439 1.47874 1.55760 1.61032 1.92893 2.48392 2.52636 2.68099 3.02179 3.05517 3.36796 3.40014 3.54728 3.72765 3.77729 4.01397 4.09151 4.12988 4.24001 4.33492 4.41638 4.48071 4.51495 4.64258 4.70089 4.86741 4.89729 4.92453 4.94784 5.06774 5.11564 5.21406 5.29797 5.36723 5.45037 5.55213 5.60821 5.63743 5.72887 5.78758 5.84658 6.26937 6.31709 6.47380 6.54903 7.13338 7.16411 7.87067 8.54207 9.29832 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.001743 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.843023 B =16056.146428 C =17010.774465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.620 5.620 10 C 0.172 3.828 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.150 3.850 14 H 0.037 0.963 15 C -0.114 4.114 16 C -0.110 4.110 17 C 0.124 3.876 18 N -0.701 5.701 19 C 0.569 3.431 20 O -0.575 6.575 21 C -0.202 4.202 22 C 0.230 3.770 23 N -0.489 5.489 24 C 0.290 3.710 25 N -0.464 5.464 26 H 0.470 0.530 27 N 0.011 4.989 28 N -0.215 5.215 29 C -0.090 4.090 30 C 0.079 3.921 31 H 0.244 0.756 32 H -0.010 1.010 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.040 0.960 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.419 0.581 45 H 0.222 0.778 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.490 -26.731 -5.785 29.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.345 5.345 10 C 0.047 3.953 11 C -0.177 4.177 12 C -0.148 4.148 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.154 4.154 16 C -0.148 4.148 17 C 0.000 4.000 18 N -0.354 5.354 19 C 0.355 3.645 20 O -0.455 6.455 21 C -0.211 4.211 22 C 0.056 3.944 23 N -0.203 5.203 24 C 0.045 3.955 25 N -0.192 5.192 26 H 0.321 0.679 27 N 0.028 4.972 28 N -0.095 5.095 29 C -0.216 4.216 30 C 0.049 3.951 31 H 0.053 0.947 32 H 0.008 0.992 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.259 0.741 45 H 0.238 0.762 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 12.315 -27.098 -6.997 30.577 hybrid contribution -0.222 1.789 0.414 1.850 sum 12.093 -25.309 -6.583 28.812 Atomic orbital electron populations 1.70150 1.06272 1.24975 1.58607 1.25640 0.96482 1.00894 1.03178 0.85212 0.77860 0.79834 0.77289 1.21699 1.22360 1.19309 1.19301 0.90717 0.83736 1.41735 0.90453 1.44940 1.05742 1.02384 1.81393 1.21284 0.84624 0.93354 0.96035 1.22880 0.99745 0.95709 0.99355 1.22595 0.94939 0.97316 0.99931 1.21248 0.95121 0.85186 0.93996 0.94529 1.21827 0.99018 0.96731 0.97839 1.21666 1.00540 0.97612 0.94999 1.21338 0.96313 0.84289 0.98016 1.45708 1.53378 1.17452 1.18847 1.17926 0.78280 0.86187 0.82078 1.90833 1.62072 1.46770 1.45871 1.20617 1.06239 0.96792 0.97460 1.23701 0.88909 0.83914 0.97829 1.66854 1.11663 1.22817 1.18963 1.19766 0.94682 0.88603 0.92480 1.47551 1.41681 1.14569 1.15349 0.67852 1.81709 1.14087 1.08108 0.93313 1.74908 1.09733 1.01964 1.22938 1.20540 1.08082 0.98450 0.94495 1.21166 0.85589 0.92472 0.95919 0.94657 0.99225 0.95165 0.90246 0.91892 0.90908 0.88209 0.94488 0.94098 0.88727 0.89546 0.92773 0.92392 0.74143 0.76192 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.49 10.54 21.65 0.23 -57.26 16 2 C -0.07 -3.93 5.47 84.86 0.46 -3.47 16 3 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.23 -12.33 9.75 84.03 0.82 -11.51 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.62 -30.39 3.14 -667.42 -2.09 -32.48 16 10 C 0.17 8.30 5.46 86.79 0.47 8.78 16 11 C -0.14 -4.69 7.08 31.99 0.23 -4.46 16 12 C -0.11 -3.05 5.61 31.78 0.18 -2.88 16 13 C 0.15 5.34 3.18 45.34 0.14 5.49 16 14 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 15 C -0.11 -3.56 4.69 30.60 0.14 -3.42 16 16 C -0.11 -2.02 5.07 30.60 0.16 -1.87 16 17 C 0.12 2.45 5.67 86.38 0.49 2.94 16 18 N -0.70 -9.37 5.51 -466.08 -2.57 -11.93 16 19 C 0.57 10.42 7.77 86.75 0.67 11.10 16 20 O -0.58 -16.23 16.39 -3.93 -0.06 -16.30 16 21 C -0.20 -2.73 5.88 -20.03 -0.12 -2.85 16 22 C 0.23 1.89 10.69 85.24 0.91 2.80 16 23 N -0.49 -5.76 10.37 -191.99 -1.99 -7.75 16 24 C 0.29 4.21 8.49 134.01 1.14 5.35 16 25 N -0.46 -5.33 7.52 -55.37 -0.42 -5.75 16 26 H 0.47 1.89 8.96 -213.26 -1.91 -0.02 16 27 N 0.01 0.18 13.82 37.02 0.51 0.69 16 28 N -0.21 -4.28 12.40 -52.14 -0.65 -4.93 16 29 C -0.09 -1.58 7.27 39.63 0.29 -1.29 16 30 C 0.08 1.30 9.75 22.96 0.22 1.53 16 31 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 32 H -0.01 -0.55 8.10 -2.39 -0.02 -0.57 16 33 H 0.03 1.67 6.83 -2.39 -0.02 1.66 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.07 1.89 7.79 -2.38 -0.02 1.87 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.34 7.89 -2.39 -0.02 1.32 16 39 H 0.04 1.42 8.07 -2.39 -0.02 1.40 16 40 H 0.09 1.30 7.57 -2.38 -0.02 1.28 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.42 1.93 6.51 -92.71 -0.60 1.33 16 45 H 0.22 -0.22 6.39 -2.91 -0.02 -0.24 16 46 H 0.16 2.74 7.71 -2.91 -0.02 2.71 16 Total: -1.00 -79.04 381.40 -0.27 -79.31 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -1.48 Total: 2.09 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.21 Total: 6.23 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -6.97 Total: -119.42 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.06 Total: -16.30 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.04 -0.27 -79.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266219155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.535 kcal (2) G-P(sol) polarization free energy of solvation -79.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds