Wall clock time and date at job start Wed Apr 1 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48504 * 109.46892 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47418 * 300.00197 * 3 2 1 6 6 H 1.48500 * 109.46975 * 60.00472 * 3 2 1 7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2 11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7 12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9 13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2 14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7 15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7 16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9 17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13 18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15 19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16 20 20 O 1.21585 * 120.00037 * 0.02562 * 19 18 17 21 21 C 1.47694 * 120.00228 * 179.97438 * 19 18 17 22 22 C 1.41595 * 120.03073 * 359.72631 * 21 19 18 23 23 C 1.35783 * 119.54817 * 179.72612 * 22 21 19 24 24 C 1.40860 * 119.38794 * 0.51092 * 23 22 21 25 25 N 1.32494 * 133.41660 * 179.79001 * 24 23 22 26 26 N 1.28529 * 110.24081 * 179.97438 * 25 24 23 27 27 N 1.28981 * 110.84787 * 0.02562 * 26 25 24 28 28 N 1.36933 * 119.93318 * 359.76187 * 24 23 22 29 29 C 1.35493 * 120.84302 * 359.97438 * 28 24 23 30 30 H 0.96998 * 120.00044 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.36948 * 274.74374 * 10 9 7 32 32 H 1.09004 * 110.36922 * 37.07547 * 10 9 7 33 33 H 1.09007 * 111.00007 * 155.08208 * 11 10 9 34 34 H 1.08996 * 111.00809 * 278.89195 * 11 10 9 35 35 H 1.08999 * 110.72713 * 206.13107 * 12 11 10 36 36 H 1.09004 * 110.72288 * 82.85504 * 12 11 10 37 37 H 1.09004 * 109.46878 * 65.24230 * 15 13 9 38 38 H 1.09004 * 109.47464 * 305.24167 * 15 13 9 39 39 H 1.08998 * 109.47152 * 54.95716 * 16 15 13 40 40 H 1.09004 * 109.47229 * 294.94862 * 16 15 13 41 41 H 1.09004 * 109.46866 * 299.99913 * 17 16 15 42 42 H 1.08996 * 109.47153 * 60.00557 * 17 16 15 43 43 H 0.97004 * 119.99658 * 0.02562 * 18 17 16 44 44 H 1.07996 * 120.22874 * 359.97438 * 22 21 19 45 45 H 1.07999 * 120.31011 * 180.27381 * 23 22 21 46 46 H 1.08002 * 119.82434 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1079 -2.5525 -0.3027 11 6 -0.2477 -4.0214 -0.7746 12 6 0.7643 -4.7442 0.1531 13 6 1.8982 -3.7080 0.3016 14 1 2.7026 -3.9324 -0.3988 15 6 2.4357 -3.7265 1.7339 16 6 3.1447 -5.0568 1.9955 17 6 3.7904 -5.0266 3.3823 18 7 4.4698 -6.3003 3.6326 19 6 5.1138 -6.5027 4.7990 20 8 5.1306 -5.6285 5.6438 21 6 5.7982 -7.7869 5.0515 22 6 5.7732 -8.8080 4.0709 23 6 6.4104 -9.9828 4.3110 24 6 7.0771 -10.1694 5.5378 25 7 7.7669 -11.1751 6.0555 26 7 8.1904 -10.8662 7.2291 27 7 7.8189 -9.6741 7.5522 28 7 7.0817 -9.1683 6.4721 29 6 6.4515 -7.9928 6.2338 30 1 -0.4850 0.8400 0.0004 31 1 -0.7062 -2.3831 0.5925 32 1 -0.4092 -1.8689 -1.0964 33 1 -1.2604 -4.3898 -0.6103 34 1 0.0383 -4.1244 -1.8213 35 1 1.1341 -5.6561 -0.3157 36 1 0.3125 -4.9628 1.1207 37 1 1.6081 -3.6120 2.4341 38 1 3.1411 -2.9063 1.8679 39 1 3.9144 -5.2131 1.2398 40 1 2.4200 -5.8699 1.9498 41 1 4.5150 -4.2136 3.4280 42 1 3.0208 -4.8704 4.1382 43 1 4.4566 -6.9976 2.9583 44 1 5.2543 -8.6521 3.1367 45 1 6.4030 -10.7683 3.5699 46 1 6.4652 -7.2145 6.9825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266226393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:19 Heat of formation + Delta-G solvation = 130.705940 kcal Electronic energy + Delta-G solvation = -28416.415123 eV Core-core repulsion = 24344.725975 eV Total energy + Delta-G solvation = -4071.689148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -44.00439 -40.69499 -38.74626 -37.90564 -35.89873 -34.79802 -33.33987 -32.69170 -32.10358 -31.18021 -29.46889 -28.37589 -26.21659 -25.07486 -24.77621 -23.98029 -23.41141 -21.74074 -21.59075 -20.20365 -19.51434 -19.15777 -18.14656 -18.06522 -17.48466 -16.77875 -16.32774 -15.99162 -15.70612 -15.20766 -15.10373 -14.67562 -14.38197 -14.24493 -14.09138 -13.83291 -13.55635 -13.09078 -12.98237 -12.53336 -12.43324 -12.29091 -12.13388 -11.99156 -11.82592 -11.64966 -11.57275 -11.10240 -10.88406 -10.84849 -10.80818 -10.67019 -10.56153 -10.09386 -10.04726 -9.82819 -9.68613 -9.67396 -9.50832 -9.28573 -8.60864 -6.80413 -5.77637 -3.12952 -0.52346 -0.22074 0.97835 1.36371 2.04758 2.57371 2.75590 2.99003 3.36220 3.42487 3.43931 3.44506 3.68852 3.85650 4.16302 4.23615 4.45629 4.64441 4.83710 4.89141 4.93033 5.01935 5.02376 5.24169 5.26432 5.39354 5.49667 5.54035 5.59154 5.63949 5.75389 5.79436 5.89328 5.98614 6.07514 6.22220 6.28032 6.34939 6.50897 6.63362 6.67074 6.88498 6.95544 7.11299 7.51790 7.60602 7.62299 7.75474 7.77880 8.26672 9.17670 9.79330 10.48259 11.34724 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020761 B = 0.001752 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.384291 B =15974.819671 C =16934.828432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.075 0.925 9 N -0.596 5.596 10 C 0.172 3.828 11 C -0.151 4.151 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.123 4.123 16 C -0.128 4.128 17 C 0.117 3.883 18 N -0.714 5.714 19 C 0.567 3.433 20 O -0.525 6.525 21 C -0.150 4.150 22 C -0.034 4.034 23 C -0.091 4.091 24 C 0.251 3.749 25 N -0.322 5.322 26 N -0.002 5.002 27 N -0.100 5.100 28 N -0.307 5.307 29 C 0.180 3.820 30 H 0.252 0.748 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.401 0.599 44 H 0.163 0.837 45 H 0.175 0.825 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -20.196 5.583 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.163 4.163 16 C -0.167 4.167 17 C -0.006 4.006 18 N -0.365 5.365 19 C 0.351 3.649 20 O -0.402 6.402 21 C -0.159 4.159 22 C -0.060 4.060 23 C -0.114 4.114 24 C -0.004 4.004 25 N -0.180 5.180 26 N 0.005 4.995 27 N -0.083 5.083 28 N -0.085 5.085 29 C 0.050 3.950 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.236 0.764 44 H 0.181 0.819 45 H 0.193 0.807 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.519 -20.093 7.352 23.418 hybrid contribution -0.073 1.172 -0.713 1.374 sum 9.446 -18.922 6.639 22.166 Atomic orbital electron populations 1.69947 1.04986 1.25037 1.56412 1.24905 0.95661 0.97790 1.01861 0.86112 0.78874 0.83928 0.77262 1.20445 1.21792 1.21700 1.18993 0.90324 0.82316 1.43907 0.90762 1.44549 1.06186 1.01332 1.79965 1.21407 0.85205 0.90011 0.98622 1.23013 0.97526 0.99826 0.98580 1.22590 0.97187 0.97100 0.99334 1.20922 0.93918 0.87072 0.92606 0.95165 1.22044 0.99914 0.94476 0.99867 1.21862 0.99883 1.00568 0.94364 1.21668 0.96623 0.83911 0.98368 1.45956 1.53916 1.19261 1.17389 1.17476 0.79110 0.85458 0.82833 1.90882 1.60471 1.44091 1.44758 1.19760 1.03932 0.97565 0.94664 1.21476 0.94800 0.90814 0.98956 1.20348 0.97794 0.99920 0.93336 1.23166 0.97783 0.85820 0.93635 1.75214 1.16801 1.22280 1.03751 1.77916 1.11051 1.04828 1.05751 1.82927 1.13626 1.06764 1.05027 1.48856 1.33417 1.12718 1.13518 1.21771 0.89022 0.85981 0.98201 0.93755 0.95816 0.91314 0.92564 0.92493 0.92657 0.92047 0.92151 0.91506 0.91551 0.91541 0.90733 0.90817 0.76395 0.81925 0.80717 0.78550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.58 55.49 0.59 -25.62 16 2 C -0.01 -0.15 5.47 -17.43 -0.10 -0.24 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.23 -5.99 9.71 -15.06 -0.15 -6.13 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.60 -14.18 3.13 -162.58 -0.51 -14.69 16 10 C 0.17 3.99 5.41 -2.53 -0.01 3.98 16 11 C -0.15 -2.66 7.08 -24.59 -0.17 -2.83 16 12 C -0.12 -1.90 5.71 -24.90 -0.14 -2.05 16 13 C 0.16 2.95 3.16 -66.96 -0.21 2.74 16 14 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 15 C -0.12 -1.91 4.71 -26.73 -0.13 -2.04 16 16 C -0.13 -1.30 5.10 -26.73 -0.14 -1.43 16 17 C 0.12 1.14 5.68 -4.03 -0.02 1.11 16 18 N -0.71 -4.90 5.51 -61.29 -0.34 -5.23 16 19 C 0.57 4.72 7.77 -12.40 -0.10 4.63 16 20 O -0.53 -6.54 16.28 5.29 0.09 -6.45 16 21 C -0.15 -0.87 5.84 -105.33 -0.62 -1.49 16 22 C -0.03 -0.10 9.53 -39.18 -0.37 -0.47 16 23 C -0.09 -0.37 10.09 -39.47 -0.40 -0.76 16 24 C 0.25 2.08 8.02 -156.26 -1.25 0.83 16 25 N -0.32 -3.51 12.26 31.10 0.38 -3.13 16 26 N 0.00 -0.03 13.35 60.35 0.81 0.78 16 27 N -0.10 -1.14 13.99 60.35 0.84 -0.29 16 28 N -0.31 -2.75 3.92 -12.06 -0.05 -2.79 16 29 C 0.18 1.27 10.77 -16.51 -0.18 1.09 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.02 0.60 8.06 -51.93 -0.42 0.18 16 32 H 0.07 1.80 6.93 -51.93 -0.36 1.44 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.89 7.76 -51.93 -0.40 0.49 16 37 H 0.06 1.01 8.02 -51.93 -0.42 0.60 16 38 H 0.07 1.18 7.84 -51.93 -0.41 0.77 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.58 7.65 -51.93 -0.40 0.19 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.40 1.36 6.51 -40.82 -0.27 1.10 16 44 H 0.16 -0.09 6.44 -52.49 -0.34 -0.43 16 45 H 0.18 0.20 8.06 -52.49 -0.42 -0.23 16 46 H 0.20 1.24 7.57 -52.49 -0.40 0.84 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -34.10 381.91 -7.77 -41.87 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -6.33 Total: -3.60 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -3.98 Total: -3.07 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 1.72 Total: -50.98 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.09 Total: -6.45 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.10 -7.77 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266226393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.579 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds