Wall clock time and date at job start Wed Apr 1 2020 04:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00387 * 2 1 4 4 H 1.48495 * 109.47020 * 239.99775 * 3 2 1 5 5 H 1.48506 * 109.46989 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47088 * 119.99387 * 3 2 1 7 7 C 1.38810 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00146 * 163.08991 * 7 2 1 9 9 N 1.36940 * 120.00334 * 343.08262 * 7 2 1 10 10 C 1.46923 * 120.63136 * 331.84483 * 9 7 2 11 11 C 1.53191 * 108.77854 * 233.59060 * 10 9 7 12 12 C 1.53040 * 109.31112 * 305.36040 * 11 10 9 13 13 C 1.52996 * 109.46140 * 181.38513 * 12 11 10 14 14 C 1.53008 * 109.46990 * 174.97497 * 13 12 11 15 15 N 1.46502 * 109.47096 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00075 * 180.27245 * 15 14 13 17 17 O 1.21541 * 119.99770 * 359.73333 * 16 15 14 18 18 C 1.47876 * 119.99860 * 179.72455 * 16 15 14 19 19 C 1.39449 * 121.11411 * 359.71984 * 18 16 15 20 20 C 1.38629 * 119.37306 * 179.73632 * 19 18 16 21 21 N 1.31580 * 121.63066 * 0.57967 * 20 19 18 22 22 C 1.32212 * 121.87105 * 359.69668 * 21 20 19 23 23 N 1.37210 * 134.67245 * 180.02562 * 22 21 20 24 24 H 0.96998 * 125.86876 * 359.97438 * 23 22 21 25 25 N 1.28780 * 108.25898 * 179.97438 * 23 22 21 26 26 N 1.28691 * 111.76086 * 359.97438 * 25 23 22 27 27 C 1.34397 * 109.14824 * 0.02562 * 26 25 23 28 28 C 1.53047 * 109.52521 * 61.37471 * 12 11 10 29 29 C 1.46923 * 120.63033 * 151.82721 * 9 7 2 30 30 H 0.97004 * 119.99358 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58940 * 113.79852 * 10 9 7 32 32 H 1.09005 * 109.70280 * 353.44157 * 10 9 7 33 33 H 1.09002 * 109.49930 * 185.41202 * 11 10 9 34 34 H 1.08994 * 109.50069 * 65.31892 * 11 10 9 35 35 H 1.09005 * 109.46392 * 301.36231 * 12 11 10 36 36 H 1.09001 * 109.46938 * 54.97664 * 13 12 11 37 37 H 1.08994 * 109.47459 * 294.97666 * 13 12 11 38 38 H 1.09001 * 109.47143 * 60.00293 * 14 13 12 39 39 H 1.09003 * 109.47032 * 300.00206 * 14 13 12 40 40 H 0.97002 * 119.99593 * 0.02562 * 15 14 13 41 41 H 1.07996 * 120.31684 * 0.02562 * 19 18 16 42 42 H 1.07992 * 119.18119 * 180.27676 * 20 19 18 43 43 H 1.08999 * 109.49573 * 58.57585 * 28 12 11 44 44 H 1.08998 * 109.49830 * 178.67959 * 28 12 11 45 45 H 1.09001 * 109.58486 * 246.19587 * 29 9 7 46 46 H 1.08996 * 109.58884 * 6.48034 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2715 9 7 1.3698 -2.3623 0.3461 10 6 0.2258 -2.3400 1.2677 11 6 0.4969 -3.3190 2.4143 12 6 0.8114 -4.7007 1.8363 13 6 1.0489 -5.6895 2.9794 14 6 1.2392 -7.0954 2.4064 15 7 1.4660 -8.0423 3.5010 16 6 1.6660 -9.3477 3.2322 17 8 1.6533 -9.7402 2.0820 18 6 1.9010 -10.3025 4.3367 19 6 1.9262 -9.8765 5.6643 20 6 2.1441 -10.8034 6.6719 21 7 2.3395 -12.0774 6.4070 22 6 2.3328 -12.5421 5.1693 23 7 2.5012 -13.7805 4.6029 24 1 2.6723 -14.6062 5.0822 25 7 2.3931 -13.6580 3.3255 26 7 2.1650 -12.4393 2.9807 27 6 2.1123 -11.6718 4.0827 28 6 2.0671 -4.6172 0.9653 29 6 1.8136 -3.6529 -0.1979 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6773 -2.6404 0.7365 32 1 0.0964 -1.3346 1.6687 33 1 -0.3838 -3.3838 3.0533 34 1 1.3465 -2.9675 2.9996 35 1 -0.0287 -5.0408 1.2305 36 1 0.1891 -5.6836 3.6494 37 1 1.9421 -5.3983 3.5320 38 1 2.0990 -7.1013 1.7364 39 1 0.3459 -7.3865 1.8537 40 1 1.4759 -7.7290 4.4190 41 1 1.7729 -8.8351 5.9057 42 1 2.1586 -10.4708 7.6992 43 1 2.9018 -4.2533 1.5644 44 1 2.3041 -5.6060 0.5728 45 1 1.0400 -4.0606 -0.8486 46 1 2.7330 -3.5132 -0.7663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267945816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:20 Heat of formation + Delta-G solvation = 80.511070 kcal Electronic energy + Delta-G solvation = -28771.233607 eV Core-core repulsion = 24697.367847 eV Total energy + Delta-G solvation = -4073.865761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.54215 -41.12255 -39.82364 -39.39340 -36.74349 -35.36870 -35.12764 -33.43361 -32.72464 -31.90460 -31.52540 -29.98258 -27.27950 -26.34713 -24.98084 -24.84324 -24.05262 -23.45572 -22.19484 -22.04317 -20.63461 -19.94787 -19.62684 -18.67765 -18.53635 -17.77005 -17.04394 -16.82029 -16.58386 -16.51192 -15.80413 -15.65386 -15.34646 -15.26029 -15.01945 -14.84292 -14.40285 -14.29731 -13.97920 -13.90535 -13.79398 -13.50526 -13.01526 -12.90343 -12.81903 -12.76190 -12.70103 -12.50577 -12.26663 -12.10286 -11.91464 -11.77368 -11.58379 -11.38059 -11.00558 -10.94483 -10.63673 -10.49786 -10.42478 -10.30799 -10.04259 -8.63743 -7.84844 -5.30384 -1.07858 -0.19919 0.97202 1.12145 1.47858 1.49559 1.56865 1.73388 1.89475 2.53141 2.54399 2.69510 3.14982 3.28836 3.31825 3.40738 3.73247 3.76025 3.88152 3.98889 4.13644 4.17083 4.32784 4.35744 4.37764 4.48761 4.63015 4.71529 4.71928 4.79436 4.83422 4.94775 5.07989 5.08082 5.16107 5.20488 5.31984 5.37996 5.41746 5.45751 5.52333 5.59768 5.64311 5.70671 5.85779 6.42111 6.42131 6.46818 6.99463 7.13465 7.18264 7.90619 8.41961 9.20853 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.030775 B = 0.001716 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.609168 B =16314.957406 C =16733.405819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.119 4.119 12 C -0.071 4.071 13 C -0.107 4.107 14 C 0.122 3.878 15 N -0.698 5.698 16 C 0.546 3.454 17 O -0.558 6.558 18 C -0.041 4.041 19 C -0.104 4.104 20 C 0.176 3.824 21 N -0.464 5.464 22 C 0.206 3.794 23 N -0.383 5.383 24 H 0.474 0.526 25 N -0.014 5.014 26 N -0.263 5.263 27 C -0.027 4.027 28 C -0.118 4.118 29 C 0.137 3.863 30 H 0.250 0.750 31 H -0.010 1.010 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.420 0.580 41 H 0.206 0.794 42 H 0.238 0.762 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.006 0.994 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 -24.005 22.340 33.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.158 4.158 12 C -0.091 4.091 13 C -0.144 4.144 14 C -0.002 4.002 15 N -0.352 5.352 16 C 0.332 3.668 17 O -0.435 6.435 18 C -0.057 4.057 19 C -0.127 4.127 20 C 0.003 3.997 21 N -0.178 5.178 22 C -0.037 4.037 23 N -0.116 5.116 24 H 0.326 0.674 25 N 0.003 4.997 26 N -0.138 5.138 27 C -0.158 4.158 28 C -0.157 4.157 29 C 0.011 3.989 30 H 0.059 0.941 31 H 0.008 0.992 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.259 0.741 41 H 0.223 0.777 42 H 0.254 0.746 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.024 0.976 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.895 -25.508 20.662 33.057 hybrid contribution 0.086 1.558 -0.029 1.561 sum 3.981 -23.949 20.633 31.861 Atomic orbital electron populations 1.70194 1.06659 1.25847 1.55507 1.25813 0.96071 1.01519 1.01385 0.85341 0.77560 0.79201 0.78341 1.20400 1.21988 1.20147 1.19482 0.92739 0.86212 1.40926 0.91908 1.44338 1.36050 1.02164 1.50937 1.20637 0.87399 0.97911 0.89365 1.22004 1.01047 0.95062 0.97689 1.20891 0.97380 0.94517 0.96279 1.21709 1.04038 0.90915 0.97785 1.21425 1.01261 0.88204 0.89278 1.45693 1.71673 1.05952 1.11901 1.18281 0.77477 0.82989 0.88046 1.90874 1.50842 1.78767 1.23051 1.19716 1.01041 0.89307 0.95594 1.23026 0.95810 1.04747 0.89115 1.23899 0.88944 0.84234 1.02620 1.66508 1.14912 1.19088 1.17331 1.19980 1.04998 0.86942 0.91805 1.44728 1.52251 1.09653 1.04986 0.67418 1.78179 1.12426 1.14929 0.94141 1.75527 1.17304 0.95912 1.25060 1.20550 1.07674 0.96306 0.91249 1.21977 0.97931 0.98484 0.97262 1.21079 0.96704 0.86471 0.94632 0.94147 0.99234 0.93058 0.90884 0.92611 0.92483 0.89057 0.89672 0.92123 0.92452 0.74076 0.77721 0.74629 0.92235 0.90937 0.97635 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.90 11.19 21.65 0.24 -55.66 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 3 Si 0.97 45.04 29.59 68.60 2.03 47.07 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.26 -14.70 9.58 84.03 0.81 -13.90 16 8 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -31.03 2.99 -699.10 -2.09 -33.12 16 10 C 0.17 8.21 5.30 86.36 0.46 8.67 16 11 C -0.12 -4.02 5.36 30.67 0.16 -3.85 16 12 C -0.07 -2.01 2.15 -10.77 -0.02 -2.04 16 13 C -0.11 -1.91 4.80 30.60 0.15 -1.76 16 14 C 0.12 2.43 5.43 86.38 0.47 2.89 16 15 N -0.70 -10.53 5.51 -465.93 -2.57 -13.10 16 16 C 0.55 12.36 7.79 86.80 0.68 13.04 16 17 O -0.56 -19.04 16.27 -3.84 -0.06 -19.10 16 18 C -0.04 -0.70 5.92 -19.79 -0.12 -0.81 16 19 C -0.10 -0.49 9.61 22.66 0.22 -0.28 16 20 C 0.18 0.58 11.14 84.82 0.95 1.52 16 21 N -0.46 -5.15 10.35 -193.10 -2.00 -7.15 16 22 C 0.21 3.46 8.56 134.17 1.15 4.61 16 23 N -0.38 -5.64 7.06 -55.48 -0.39 -6.03 16 24 H 0.47 2.72 8.96 -219.84 -1.97 0.75 16 25 N -0.01 -0.32 13.29 37.02 0.49 0.17 16 26 N -0.26 -7.57 11.92 -51.94 -0.62 -8.19 16 27 C -0.03 -0.63 6.97 40.06 0.28 -0.35 16 28 C -0.12 -3.75 5.15 30.68 0.16 -3.59 16 29 C 0.14 5.79 6.52 86.36 0.56 6.35 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.05 2.78 6.07 -2.38 -0.01 2.76 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.43 6.54 -2.39 -0.02 1.42 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.42 2.34 6.62 -92.71 -0.61 1.72 16 41 H 0.21 -1.04 6.53 -2.91 -0.02 -1.06 16 42 H 0.24 -1.75 8.06 -2.91 -0.02 -1.77 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.03 6.50 -2.39 -0.02 2.01 16 45 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 Total: -1.00 -87.57 375.38 -0.20 -87.77 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -1.54 Total: -0.62 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.31 Total: 7.96 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -6.94 Total: -123.09 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -87.57 -0.20 -87.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267945816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.284 kcal (2) G-P(sol) polarization free energy of solvation -87.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds