Wall clock time and date at job start Wed Apr 1 2020 04:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47184 * 270.00532 * 3 2 1 5 5 H 1.48504 * 109.47237 * 29.99892 * 3 2 1 6 6 H 1.48497 * 109.47245 * 150.00295 * 3 2 1 7 7 C 1.38809 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00477 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99706 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00084 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47545 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46807 * 305.00455 * 11 10 9 13 13 C 1.53005 * 109.46659 * 64.99865 * 11 10 9 14 14 C 1.53001 * 109.46842 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46922 * 299.99944 * 14 13 11 16 16 C 1.53000 * 109.47023 * 60.00496 * 15 14 13 17 17 C 1.52990 * 109.47456 * 184.99929 * 11 10 9 18 18 H 1.09007 * 109.47194 * 60.00597 * 17 11 10 19 19 N 1.46499 * 109.47333 * 300.00292 * 17 11 10 20 20 C 1.34784 * 119.99971 * 154.99849 * 19 17 11 21 21 O 1.21516 * 120.00002 * 359.72737 * 20 19 17 22 22 C 1.48113 * 119.99706 * 180.02562 * 20 19 17 23 23 C 1.39822 * 119.37126 * 179.73098 * 22 20 19 24 24 C 1.36978 * 119.60457 * 179.69863 * 23 22 20 25 25 C 1.39807 * 118.25158 * 0.57598 * 24 23 22 26 26 N 1.34654 * 135.00386 * 179.71080 * 25 24 23 27 27 N 1.28668 * 109.16023 * 179.97438 * 26 25 24 28 28 N 1.28776 * 111.84709 * 0.02562 * 27 26 25 29 29 H 0.96994 * 125.85708 * 180.02562 * 28 27 26 30 30 C 1.37247 * 108.27951 * 0.02562 * 28 27 26 31 31 N 1.31954 * 134.70246 * 180.02562 * 30 28 27 32 32 H 0.96996 * 120.00758 * 0.02562 * 1 2 3 33 33 H 0.97001 * 120.00076 * 0.02562 * 9 7 2 34 34 H 1.09006 * 109.47374 * 60.00232 * 10 9 7 35 35 H 1.08999 * 109.47558 * 300.00624 * 10 9 7 36 36 H 1.08996 * 109.47029 * 60.00726 * 13 11 10 37 37 H 1.08991 * 109.47259 * 300.00025 * 13 11 10 38 38 H 1.08995 * 109.46954 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.47521 * 60.00405 * 14 13 11 40 40 H 1.08996 * 109.47625 * 300.00032 * 15 14 13 41 41 H 1.09007 * 109.46879 * 180.02562 * 15 14 13 42 42 H 1.09005 * 109.47059 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.47596 * 60.00227 * 16 15 14 44 44 H 0.96999 * 119.99984 * 334.99697 * 19 17 11 45 45 H 1.07992 * 120.19684 * 359.97438 * 23 22 20 46 46 H 1.08002 * 120.87163 * 180.26100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8652 -1.5456 -0.8446 13 6 6.0074 -1.4980 1.3044 14 6 7.5115 -1.2178 1.3029 15 6 8.2758 -2.5372 1.1770 16 6 7.8849 -3.2303 -0.1298 17 6 6.3803 -3.5107 -0.1281 18 1 6.1019 -4.0045 -1.0591 19 7 6.0459 -4.3784 1.0040 20 6 6.1635 -5.7159 0.8857 21 8 6.5422 -6.2023 -0.1615 22 6 5.8248 -6.5931 2.0300 23 6 5.9462 -7.9791 1.8911 24 6 5.6401 -8.7945 2.9483 25 6 5.2013 -8.2017 4.1360 26 7 4.8169 -8.6585 5.3429 27 7 4.5043 -7.6604 6.0923 28 7 4.6475 -6.5372 5.4789 29 1 4.4702 -5.6595 5.8518 30 6 5.0942 -6.7952 4.2071 31 7 5.4058 -6.0500 3.1636 32 1 -0.4851 0.8399 -0.0004 33 1 3.8646 -0.3620 -0.0007 34 1 3.8486 -3.0425 -0.8909 35 1 3.8492 -3.0422 0.8891 36 1 5.7586 -2.1436 2.1467 37 1 5.4632 -0.5579 1.3940 38 1 7.7901 -0.7244 2.2340 39 1 7.7600 -0.5721 0.4607 40 1 8.0274 -3.1830 2.0192 41 1 9.3475 -2.3377 1.1763 42 1 8.4298 -4.1701 -0.2198 43 1 8.1335 -2.5847 -0.9721 44 1 5.7398 -3.9904 1.8386 45 1 6.2835 -8.4039 0.9573 46 1 5.7306 -9.8675 2.8649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268764353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:32 Heat of formation + Delta-G solvation = 95.307770 kcal Electronic energy + Delta-G solvation = -30208.178550 eV Core-core repulsion = 26134.954422 eV Total energy + Delta-G solvation = -4073.224128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.79484 -40.77078 -39.40831 -37.99622 -34.90545 -34.75523 -33.84176 -32.26410 -31.99759 -31.47266 -30.14504 -29.72665 -26.24640 -25.42496 -24.35313 -23.17687 -22.91158 -22.27884 -21.61944 -20.71499 -19.41980 -19.09467 -18.85552 -18.34461 -17.59561 -17.01920 -16.02181 -15.77598 -15.50164 -15.12221 -14.84669 -14.56234 -14.21825 -13.98761 -13.94699 -13.73517 -13.55514 -13.26394 -12.93091 -12.82957 -12.78396 -12.34600 -12.23479 -12.17296 -12.10018 -11.85339 -11.64713 -11.13776 -11.03456 -10.84579 -10.65318 -10.50357 -10.29578 -10.08898 -10.01282 -9.93223 -9.70670 -9.60746 -9.51983 -9.06329 -8.91360 -7.25962 -5.79656 -3.15291 -0.32495 0.52712 1.66795 1.69895 2.45241 2.85305 3.28819 3.32677 3.33753 3.35820 3.41835 3.77573 3.92374 4.32344 4.37482 4.55514 4.62962 4.73494 4.77380 4.91049 4.98149 5.05561 5.17423 5.29410 5.39991 5.44570 5.45393 5.51807 5.52366 5.59626 5.67304 5.74857 5.80786 5.91727 5.99583 6.05590 6.10956 6.13877 6.19650 6.33352 6.39428 6.44962 6.65230 6.71358 6.89267 7.40149 7.67839 7.96668 7.98141 8.39209 9.18369 9.90472 10.10286 11.38884 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010116 B = 0.003228 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.123759 B = 8671.392138 C =10069.199079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.754 5.754 10 C 0.163 3.837 11 C -0.106 4.106 12 H 0.088 0.912 13 C -0.114 4.114 14 C -0.121 4.121 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.153 3.847 18 H 0.094 0.906 19 N -0.691 5.691 20 C 0.572 3.428 21 O -0.526 6.526 22 C 0.153 3.847 23 C -0.121 4.121 24 C -0.002 4.002 25 C -0.024 4.024 26 N -0.240 5.240 27 N 0.012 4.988 28 N -0.400 5.400 29 H 0.461 0.539 30 C 0.217 3.783 31 N -0.442 5.442 32 H 0.259 0.741 33 H 0.361 0.639 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.412 0.588 45 H 0.168 0.832 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.602 -13.212 7.310 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.106 0.894 9 N -0.400 5.400 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.106 0.894 13 C -0.152 4.152 14 C -0.159 4.159 15 C -0.155 4.155 16 C -0.167 4.167 17 C 0.048 3.952 18 H 0.112 0.888 19 N -0.342 5.342 20 C 0.355 3.645 21 O -0.401 6.401 22 C -0.002 4.002 23 C -0.145 4.145 24 C -0.033 4.033 25 C -0.151 4.151 26 N -0.117 5.117 27 N 0.029 4.971 28 N -0.132 5.132 29 H 0.310 0.690 30 C -0.027 4.027 31 N -0.158 5.158 32 H 0.069 0.931 33 H 0.194 0.806 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.250 0.750 45 H 0.185 0.815 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 18.129 -13.447 7.974 23.939 hybrid contribution 0.422 1.781 -0.169 1.838 sum 18.551 -11.666 7.806 23.263 Atomic orbital electron populations 1.69699 1.05123 1.25814 1.57605 1.24670 0.95217 0.97172 1.02082 0.86554 0.79141 0.85019 0.77803 1.21062 1.21773 1.20348 1.19048 0.80667 0.94681 1.42936 0.89362 1.42701 1.03988 1.02131 1.91165 1.20633 0.87742 0.89285 0.98739 1.21692 0.96543 0.95084 0.99222 0.89413 1.21573 0.95169 1.01438 0.96998 1.21587 0.95482 0.97071 1.01715 1.21502 0.99391 0.96767 0.97801 1.21923 0.95420 1.00960 0.98381 1.21073 0.94224 0.90194 0.89708 0.88754 1.46006 1.65422 1.05182 1.17630 1.17640 0.78468 0.82500 0.85927 1.90811 1.46847 1.74901 1.27528 1.21300 0.95628 0.92787 0.90485 1.21755 0.99582 0.92431 1.00728 1.20531 0.93076 1.01671 0.88007 1.20692 1.06049 0.92299 0.96072 1.75429 1.15303 1.20176 1.00754 1.78130 1.12236 0.86974 1.19795 1.44727 1.49624 1.10828 1.07981 0.69047 1.19772 1.02915 0.91293 0.88726 1.66274 1.11739 1.39909 0.97923 0.93057 0.80632 0.95464 0.95595 0.92211 0.90832 0.92205 0.91880 0.92191 0.92300 0.91436 0.90733 0.75037 0.81476 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.24 13.97 55.49 0.78 -28.46 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.71 27.73 -169.99 -4.71 17.00 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 7 C -0.24 -6.82 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.26 5.13 -59.91 -0.31 -17.57 16 10 C 0.16 3.00 5.42 -4.04 -0.02 2.98 16 11 C -0.11 -1.46 2.02 -90.62 -0.18 -1.64 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.11 -1.46 4.90 -26.73 -0.13 -1.59 16 14 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 15 C -0.12 -1.12 5.77 -26.73 -0.15 -1.27 16 16 C -0.13 -1.31 5.61 -26.71 -0.15 -1.46 16 17 C 0.15 1.83 2.23 -67.91 -0.15 1.68 16 18 H 0.09 1.25 7.57 -51.93 -0.39 0.85 16 19 N -0.69 -8.16 3.61 -54.64 -0.20 -8.35 16 20 C 0.57 7.03 7.77 -12.20 -0.09 6.94 16 21 O -0.53 -7.46 15.95 5.35 0.09 -7.37 16 22 C 0.15 1.67 6.74 -82.93 -0.56 1.11 16 23 C -0.12 -1.05 9.55 -39.45 -0.38 -1.43 16 24 C 0.00 -0.02 10.16 -39.45 -0.40 -0.42 16 25 C -0.02 -0.25 7.38 -84.91 -0.63 -0.87 16 26 N -0.24 -2.74 12.43 32.12 0.40 -2.34 16 27 N 0.01 0.13 13.28 60.35 0.80 0.93 16 28 N -0.40 -3.54 7.06 31.13 0.22 -3.32 16 29 H 0.46 2.55 8.96 -190.26 -1.71 0.85 16 30 C 0.22 2.32 8.56 -156.28 -1.34 0.98 16 31 N -0.44 -4.90 9.54 -8.91 -0.08 -4.99 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.36 7.99 4.71 -40.82 -0.19 7.79 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.03 0.49 7.61 -51.93 -0.40 0.10 16 36 H 0.06 0.74 6.51 -51.93 -0.34 0.40 16 37 H 0.07 1.11 7.18 -51.93 -0.37 0.73 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.59 7.61 -51.93 -0.39 0.19 16 41 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.41 4.78 5.98 -40.82 -0.24 4.54 16 45 H 0.17 1.19 7.61 -52.49 -0.40 0.79 16 46 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -33.96 372.59 -9.42 -43.37 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.41 Total: 8.85 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -4.60 Total: -3.36 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: 1.61 Total: -64.10 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: 0.09 Total: -7.37 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.96 -9.42 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268764353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.682 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds