Wall clock time and date at job start Wed Apr 1 2020 04:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47184 * 270.00532 * 3 2 1 5 5 H 1.48504 * 109.47237 * 29.99892 * 3 2 1 6 6 H 1.48497 * 109.47245 * 150.00295 * 3 2 1 7 7 C 1.38809 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00477 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99706 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00084 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47545 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46807 * 305.00455 * 11 10 9 13 13 C 1.53005 * 109.46659 * 64.99865 * 11 10 9 14 14 C 1.53001 * 109.46842 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46922 * 299.99944 * 14 13 11 16 16 C 1.53000 * 109.47023 * 60.00496 * 15 14 13 17 17 C 1.52990 * 109.47456 * 184.99929 * 11 10 9 18 18 H 1.09007 * 109.47194 * 60.00597 * 17 11 10 19 19 N 1.46499 * 109.47333 * 300.00292 * 17 11 10 20 20 C 1.34784 * 119.99971 * 154.99849 * 19 17 11 21 21 O 1.21516 * 120.00002 * 359.72737 * 20 19 17 22 22 C 1.48113 * 119.99706 * 180.02562 * 20 19 17 23 23 C 1.39822 * 119.37126 * 179.73098 * 22 20 19 24 24 C 1.36978 * 119.60457 * 179.69863 * 23 22 20 25 25 C 1.39807 * 118.25158 * 0.57598 * 24 23 22 26 26 N 1.34654 * 135.00386 * 179.71080 * 25 24 23 27 27 N 1.28668 * 109.16023 * 179.97438 * 26 25 24 28 28 N 1.28776 * 111.84709 * 0.02562 * 27 26 25 29 29 H 0.96994 * 125.85708 * 180.02562 * 28 27 26 30 30 C 1.37247 * 108.27951 * 0.02562 * 28 27 26 31 31 N 1.31954 * 134.70246 * 180.02562 * 30 28 27 32 32 H 0.96996 * 120.00758 * 0.02562 * 1 2 3 33 33 H 0.97001 * 120.00076 * 0.02562 * 9 7 2 34 34 H 1.09006 * 109.47374 * 60.00232 * 10 9 7 35 35 H 1.08999 * 109.47558 * 300.00624 * 10 9 7 36 36 H 1.08996 * 109.47029 * 60.00726 * 13 11 10 37 37 H 1.08991 * 109.47259 * 300.00025 * 13 11 10 38 38 H 1.08995 * 109.46954 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.47521 * 60.00405 * 14 13 11 40 40 H 1.08996 * 109.47625 * 300.00032 * 15 14 13 41 41 H 1.09007 * 109.46879 * 180.02562 * 15 14 13 42 42 H 1.09005 * 109.47059 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.47596 * 60.00227 * 16 15 14 44 44 H 0.96999 * 119.99984 * 334.99697 * 19 17 11 45 45 H 1.07992 * 120.19684 * 359.97438 * 23 22 20 46 46 H 1.08002 * 120.87163 * 180.26100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8652 -1.5456 -0.8446 13 6 6.0074 -1.4980 1.3044 14 6 7.5115 -1.2178 1.3029 15 6 8.2758 -2.5372 1.1770 16 6 7.8849 -3.2303 -0.1298 17 6 6.3803 -3.5107 -0.1281 18 1 6.1019 -4.0045 -1.0591 19 7 6.0459 -4.3784 1.0040 20 6 6.1635 -5.7159 0.8857 21 8 6.5422 -6.2023 -0.1615 22 6 5.8248 -6.5931 2.0300 23 6 5.9462 -7.9791 1.8911 24 6 5.6401 -8.7945 2.9483 25 6 5.2013 -8.2017 4.1360 26 7 4.8169 -8.6585 5.3429 27 7 4.5043 -7.6604 6.0923 28 7 4.6475 -6.5372 5.4789 29 1 4.4702 -5.6595 5.8518 30 6 5.0942 -6.7952 4.2071 31 7 5.4058 -6.0500 3.1636 32 1 -0.4851 0.8399 -0.0004 33 1 3.8646 -0.3620 -0.0007 34 1 3.8486 -3.0425 -0.8909 35 1 3.8492 -3.0422 0.8891 36 1 5.7586 -2.1436 2.1467 37 1 5.4632 -0.5579 1.3940 38 1 7.7901 -0.7244 2.2340 39 1 7.7600 -0.5721 0.4607 40 1 8.0274 -3.1830 2.0192 41 1 9.3475 -2.3377 1.1763 42 1 8.4298 -4.1701 -0.2198 43 1 8.1335 -2.5847 -0.9721 44 1 5.7398 -3.9904 1.8386 45 1 6.2835 -8.4039 0.9573 46 1 5.7306 -9.8675 2.8649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268764353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:31 Heat of formation + Delta-G solvation = 71.401766 kcal Electronic energy + Delta-G solvation = -30209.215192 eV Core-core repulsion = 26134.954422 eV Total energy + Delta-G solvation = -4074.260770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.56729 -41.71473 -40.29568 -38.98334 -36.62795 -35.53759 -34.76735 -33.87714 -32.99551 -32.29705 -31.62928 -30.72258 -27.35286 -26.70962 -25.12411 -24.41148 -23.95300 -23.43558 -22.53260 -22.03727 -20.24274 -20.13004 -19.68167 -19.59803 -19.08995 -17.80457 -16.97757 -16.70894 -16.65885 -16.37215 -16.10579 -15.77498 -15.51003 -15.17025 -14.89245 -14.64801 -14.61844 -14.53200 -14.17694 -14.05166 -13.81796 -13.59166 -13.15859 -13.06591 -12.99757 -12.93348 -12.84842 -12.73902 -12.56714 -12.16374 -11.90838 -11.86277 -11.58945 -11.40436 -11.23047 -11.05982 -10.90066 -10.78243 -10.47146 -10.30224 -10.02075 -9.30747 -8.04255 -5.38147 -1.11061 -0.20241 0.84845 0.97271 1.36346 1.41170 1.48376 1.58854 1.95699 2.47372 2.51085 2.54332 2.99998 3.16801 3.27123 3.42335 3.54706 3.66660 3.75361 3.82187 3.94190 4.18977 4.22324 4.23016 4.31146 4.44316 4.46852 4.56299 4.64298 4.69892 4.72001 4.74482 4.90405 5.00825 5.07477 5.14314 5.16146 5.25278 5.29032 5.32344 5.39444 5.47363 5.50031 5.58690 5.73114 6.09021 6.19313 6.45659 6.88827 7.02240 7.06644 7.81787 8.02850 9.17560 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010116 B = 0.003228 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.123759 B = 8671.392138 C =10069.199079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.245 1.245 7 C -0.236 4.236 8 H 0.049 0.951 9 N -0.752 5.752 10 C 0.163 3.837 11 C -0.093 4.093 12 H 0.095 0.905 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.112 4.112 16 C -0.121 4.121 17 C 0.156 3.844 18 H 0.081 0.919 19 N -0.689 5.689 20 C 0.572 3.428 21 O -0.547 6.547 22 C 0.139 3.861 23 C -0.117 4.117 24 C 0.011 3.989 25 C -0.035 4.035 26 N -0.258 5.258 27 N 0.007 4.993 28 N -0.386 5.386 29 H 0.472 0.528 30 C 0.202 3.798 31 N -0.453 5.453 32 H 0.258 0.742 33 H 0.368 0.632 34 H 0.013 0.987 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.413 0.587 45 H 0.185 0.815 46 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.550 -12.891 7.592 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.255 4.255 3 Si 0.784 3.216 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.169 1.169 7 C -0.367 4.367 8 H 0.067 0.933 9 N -0.399 5.399 10 C 0.037 3.963 11 C -0.112 4.112 12 H 0.113 0.887 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.159 4.159 17 C 0.052 3.948 18 H 0.099 0.901 19 N -0.341 5.341 20 C 0.356 3.644 21 O -0.424 6.424 22 C -0.015 4.015 23 C -0.140 4.140 24 C -0.019 4.019 25 C -0.162 4.162 26 N -0.135 5.135 27 N 0.023 4.977 28 N -0.120 5.120 29 H 0.324 0.676 30 C -0.042 4.042 31 N -0.170 5.170 32 H 0.067 0.933 33 H 0.202 0.798 34 H 0.031 0.969 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.251 0.749 45 H 0.202 0.798 46 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 21.125 -13.137 8.276 26.217 hybrid contribution -0.571 1.561 -0.250 1.681 sum 20.554 -11.576 8.025 24.917 Atomic orbital electron populations 1.69896 1.07330 1.26779 1.59614 1.25546 0.96118 1.01440 1.02424 0.85382 0.78845 0.79175 0.78220 1.20382 1.22345 1.16921 1.18993 0.82913 0.93246 1.41580 0.93297 1.42643 1.02252 1.04088 1.90874 1.20742 0.90732 0.87251 0.97616 1.21558 0.92958 0.96391 1.00336 0.88713 1.21543 0.97079 1.00194 0.96181 1.21539 0.93230 0.97695 1.02678 1.21467 1.00299 0.96075 0.97068 1.21872 0.93337 1.01285 0.99457 1.21005 0.95533 0.89025 0.89262 0.90068 1.46011 1.65261 1.05254 1.17540 1.17824 0.77949 0.82578 0.86069 1.90794 1.47955 1.75232 1.28426 1.21261 0.96547 0.93571 0.90126 1.21936 0.99089 0.91439 1.01580 1.20920 0.91164 1.03262 0.86558 1.21067 1.06217 0.92412 0.96552 1.75400 1.16155 1.20646 1.01259 1.78072 1.12324 0.87332 1.19945 1.44752 1.48705 1.11136 1.07448 0.67611 1.19931 1.03549 0.91663 0.89097 1.66193 1.12288 1.40316 0.98169 0.93320 0.79779 0.96868 0.96155 0.92149 0.92766 0.91094 0.91140 0.92514 0.90529 0.91622 0.89482 0.74911 0.79807 0.78792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.42 13.97 21.65 0.30 -63.12 16 2 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.96 44.55 27.73 68.60 1.90 46.46 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.24 -9.99 6.52 99.48 0.65 -9.34 16 7 C -0.24 -13.53 10.47 84.03 0.88 -12.65 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 N -0.75 -34.24 5.13 -343.46 -1.76 -36.00 16 10 C 0.16 6.00 5.42 86.38 0.47 6.46 16 11 C -0.09 -2.44 2.02 -10.80 -0.02 -2.46 16 12 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 13 C -0.11 -2.65 4.90 30.60 0.15 -2.50 16 14 C -0.11 -2.00 5.92 30.59 0.18 -1.81 16 15 C -0.11 -1.78 5.77 30.59 0.18 -1.60 16 16 C -0.12 -2.18 5.61 30.61 0.17 -2.01 16 17 C 0.16 3.57 2.23 45.00 0.10 3.67 16 18 H 0.08 2.10 7.57 -2.38 -0.02 2.08 16 19 N -0.69 -15.81 3.61 -445.08 -1.61 -17.42 16 20 C 0.57 13.73 7.77 86.86 0.68 14.41 16 21 O -0.55 -15.17 15.95 -3.77 -0.06 -15.23 16 22 C 0.14 2.93 6.74 42.05 0.28 3.21 16 23 C -0.12 -1.84 9.55 22.36 0.21 -1.63 16 24 C 0.01 0.16 10.16 22.35 0.23 0.39 16 25 C -0.03 -0.69 7.38 39.83 0.29 -0.40 16 26 N -0.26 -5.68 12.43 -52.29 -0.65 -6.33 16 27 N 0.01 0.14 13.28 37.02 0.49 0.63 16 28 N -0.39 -6.62 7.06 -55.42 -0.39 -7.01 16 29 H 0.47 5.01 8.96 -219.84 -1.97 3.04 16 30 C 0.20 4.19 8.56 134.30 1.15 5.34 16 31 N -0.45 -9.81 9.54 -182.09 -1.74 -11.55 16 32 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.37 15.65 4.71 -92.71 -0.44 15.22 16 34 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.02 0.78 7.61 -2.39 -0.02 0.76 16 36 H 0.06 1.41 6.51 -2.39 -0.02 1.39 16 37 H 0.05 1.51 7.18 -2.39 -0.02 1.49 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 0.96 7.61 -2.39 -0.02 0.94 16 41 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.41 9.34 5.98 -92.71 -0.55 8.79 16 45 H 0.18 2.25 7.61 -2.91 -0.02 2.22 16 46 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -74.95 372.59 -0.06 -75.01 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -1.96 Total: 29.44 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 5.42 Total: 5.13 kcal Atomic # 7 Polarization: -135.45 SS G_CDS: -5.35 Total: -140.80 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.06 Total: -15.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.46 kcal Total: -74.95 -0.06 -75.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268764353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.408 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds