Wall clock time and date at job start Wed Apr 1 2020 04:14:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31611 * 1
3 3 Si 1.86800 * 120.00105 * 2 1
4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1
5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1
6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1
7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1
9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1
10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2
11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7
12 12 H 1.08999 * 109.47456 * 54.99631 * 11 10 9
13 13 C 1.53008 * 109.46909 * 294.99709 * 11 10 9
14 14 C 1.52996 * 109.46909 * 179.97438 * 13 11 10
15 15 C 1.53005 * 109.47324 * 59.99979 * 14 13 11
16 16 C 1.52994 * 109.47099 * 299.99749 * 15 14 13
17 17 C 1.53003 * 109.46945 * 60.00218 * 16 15 14
18 18 H 1.08993 * 109.47368 * 59.99459 * 17 16 15
19 19 N 1.46499 * 109.47155 * 180.02562 * 17 16 15
20 20 C 1.34780 * 119.99848 * 274.99884 * 19 17 16
21 21 O 1.21517 * 120.00046 * 359.97438 * 20 19 17
22 22 C 1.48118 * 119.99640 * 180.02562 * 20 19 17
23 23 C 1.39821 * 119.37010 * 179.72856 * 22 20 19
24 24 C 1.36966 * 119.60874 * 179.71968 * 23 22 20
25 25 C 1.39817 * 118.24946 * 0.53976 * 24 23 22
26 26 N 1.34656 * 135.00336 * 179.73021 * 25 24 23
27 27 N 1.28673 * 109.15655 * 179.97438 * 26 25 24
28 28 N 1.28763 * 111.84938 * 359.97438 * 27 26 25
29 29 H 0.96995 * 125.86446 * 180.02562 * 28 27 26
30 30 C 1.37255 * 108.28289 * 0.02562 * 28 27 26
31 31 N 1.31948 * 134.70895 * 180.02562 * 30 28 27
32 32 H 0.97008 * 120.00329 * 359.97438 * 1 2 3
33 33 H 0.97001 * 119.99803 * 359.97438 * 9 7 2
34 34 H 1.09004 * 109.46963 * 299.72226 * 10 9 7
35 35 H 1.08994 * 109.47567 * 59.72378 * 10 9 7
36 36 H 1.09000 * 109.46973 * 299.99649 * 13 11 10
37 37 H 1.08995 * 109.47053 * 60.00309 * 13 11 10
38 38 H 1.09005 * 109.47318 * 180.02562 * 14 13 11
39 39 H 1.08999 * 109.47456 * 299.99922 * 14 13 11
40 40 H 1.09000 * 109.46555 * 60.00297 * 15 14 13
41 41 H 1.09001 * 109.47223 * 179.97438 * 15 14 13
42 42 H 1.08995 * 109.47006 * 179.97438 * 16 15 14
43 43 H 1.08994 * 109.47504 * 300.00329 * 16 15 14
44 44 H 0.97000 * 120.00048 * 94.99523 * 19 17 16
45 45 H 1.07998 * 120.19683 * 0.02562 * 23 22 20
46 46 H 1.08002 * 120.87888 * 180.23828 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4976 2.0465 -1.4001
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4402 0.7001
7 6 2.0102 -1.2021 -0.0005
8 1 1.4702 -2.1375 -0.0014
9 7 3.3796 -1.2021 0.0000
10 6 4.1121 -2.4708 -0.0067
11 6 5.6163 -2.1913 -0.0115
12 1 5.8690 -1.5479 0.8313
13 6 6.0013 -1.4947 -1.3183
14 6 7.5054 -1.2145 -1.3228
15 6 8.2704 -2.5343 -1.2037
16 6 7.8854 -3.2308 0.1029
17 6 6.3813 -3.5110 0.1075
18 1 6.1290 -4.1544 -0.7353
19 7 6.0124 -4.1774 1.3589
20 6 6.1311 -5.5153 1.4703
21 8 6.5435 -6.1689 0.5326
22 6 5.7576 -6.1891 2.7354
23 6 5.8805 -7.5783 2.8347
24 6 5.5421 -8.2058 4.0042
25 6 5.0702 -7.4233 5.0625
26 7 4.6502 -7.6723 6.3174
27 7 4.3179 -6.5635 6.8793
28 7 4.4822 -5.5587 6.0910
29 1 4.2961 -4.6314 6.3060
30 6 4.9657 -6.0250 4.8941
31 7 5.3099 -5.4644 3.7503
32 1 -0.4851 0.8401 0.0004
33 1 3.8646 -0.3620 0.0004
34 1 3.8521 -3.0451 0.8825
35 1 3.8454 -3.0397 -0.8974
36 1 5.7487 -2.1381 -2.1611
37 1 5.4568 -0.5543 -1.4029
38 1 7.7797 -0.7179 -2.2536
39 1 7.7577 -0.5710 -0.4801
40 1 8.0181 -3.1777 -2.0466
41 1 9.3420 -2.3347 -1.2074
42 1 8.4300 -4.1711 0.1876
43 1 8.1376 -2.5873 0.9457
44 1 5.6829 -3.6557 2.1074
45 1 6.2449 -8.1527 1.9959
46 1 5.6326 -9.2773 4.1047
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001268764356.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:14:45
Heat of formation + Delta-G solvation = 92.483904 kcal
Electronic energy + Delta-G solvation = -29870.577184 eV
Core-core repulsion = 25797.230604 eV
Total energy + Delta-G solvation = -4073.346580 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.170 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-43.78182 -40.65834 -39.30404 -38.03388 -34.85896 -34.79729 -34.26889 -32.27346
-31.97985 -31.46333 -30.09274 -29.44565 -26.21735 -25.42066 -24.34820 -23.18124
-22.94139 -22.26674 -20.88324 -20.70988 -20.11132 -19.28017 -18.81977 -18.16269
-17.57058 -17.00435 -16.38579 -15.67963 -15.32963 -15.08934 -14.72176 -14.47495
-14.29956 -13.95473 -13.92515 -13.72379 -13.53789 -13.29451 -12.95424 -12.78681
-12.76339 -12.62169 -12.21343 -12.10448 -12.08704 -11.76180 -11.29822 -11.11031
-11.02518 -10.85687 -10.75430 -10.43614 -10.37601 -10.17412 -10.08994 -9.87215
-9.69687 -9.61489 -9.50777 -9.06578 -8.91081 -7.26074 -5.79941 -3.15471
-0.31423 0.53750 1.67830 1.71569 2.45289 2.83334 3.29615 3.32614
3.34164 3.35204 3.41379 3.78200 3.93325 4.33203 4.36336 4.55186
4.60892 4.75725 4.88936 4.91892 4.99750 5.07298 5.19795 5.30653
5.39696 5.43425 5.47901 5.49531 5.51775 5.56911 5.72074 5.78496
5.81654 5.98113 6.00648 6.09111 6.12871 6.15177 6.21052 6.36466
6.39458 6.45907 6.63078 6.74350 6.90500 7.39407 7.69196 7.96428
7.97177 8.38930 9.18164 9.90290 10.10182 11.38609
Molecular weight = 344.17amu
Principal moments of inertia in cm(-1)
A = 0.008887 B = 0.003357 C = 0.002623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3149.949498 B = 8339.121009 C =10670.910444
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C 0.005 3.995
3 Si 0.883 3.117
4 H -0.283 1.283
5 H -0.291 1.291
6 H -0.277 1.277
7 C -0.243 4.243
8 H 0.089 0.911
9 N -0.754 5.754
10 C 0.162 3.838
11 C -0.105 4.105
12 H 0.075 0.925
13 C -0.109 4.109
14 C -0.123 4.123
15 C -0.114 4.114
16 C -0.127 4.127
17 C 0.152 3.848
18 H 0.094 0.906
19 N -0.695 5.695
20 C 0.573 3.427
21 O -0.525 6.525
22 C 0.152 3.848
23 C -0.121 4.121
24 C -0.002 4.002
25 C -0.023 4.023
26 N -0.240 5.240
27 N 0.012 4.988
28 N -0.399 5.399
29 H 0.461 0.539
30 C 0.217 3.783
31 N -0.441 5.441
32 H 0.259 0.741
33 H 0.360 0.640
34 H 0.027 0.973
35 H 0.028 0.972
36 H 0.067 0.933
37 H 0.072 0.928
38 H 0.062 0.938
39 H 0.060 0.940
40 H 0.065 0.935
41 H 0.061 0.939
42 H 0.066 0.934
43 H 0.063 0.937
44 H 0.413 0.587
45 H 0.168 0.832
46 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.388 -12.040 6.761 22.996
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.191 4.191
3 Si 0.714 3.286
4 H -0.210 1.210
5 H -0.218 1.218
6 H -0.204 1.204
7 C -0.373 4.373
8 H 0.106 0.894
9 N -0.400 5.400
10 C 0.035 3.965
11 C -0.124 4.124
12 H 0.093 0.907
13 C -0.147 4.147
14 C -0.160 4.160
15 C -0.152 4.152
16 C -0.165 4.165
17 C 0.048 3.952
18 H 0.112 0.888
19 N -0.345 5.345
20 C 0.356 3.644
21 O -0.400 6.400
22 C -0.003 4.003
23 C -0.145 4.145
24 C -0.033 4.033
25 C -0.151 4.151
26 N -0.117 5.117
27 N 0.029 4.971
28 N -0.131 5.131
29 H 0.310 0.690
30 C -0.027 4.027
31 N -0.157 5.157
32 H 0.069 0.931
33 H 0.194 0.806
34 H 0.045 0.955
35 H 0.046 0.954
36 H 0.086 0.914
37 H 0.091 0.909
38 H 0.081 0.919
39 H 0.079 0.921
40 H 0.084 0.916
41 H 0.080 0.920
42 H 0.085 0.915
43 H 0.082 0.918
44 H 0.249 0.751
45 H 0.185 0.815
46 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges 17.898 -12.174 7.445 22.890
hybrid contribution 0.419 1.751 -0.214 1.813
sum 18.317 -10.423 7.231 22.281
Atomic orbital electron populations
1.69700 1.05121 1.25800 1.57614 1.24663 0.95205 0.97143 1.02092
0.86567 0.79174 0.85063 0.77826 1.21013 1.21755 1.20374 1.19050
0.80669 0.94678 1.42924 0.89359 1.42701 1.03979 1.02124 1.91171
1.20651 0.87759 0.89305 0.98799 1.21659 0.96531 0.95001 0.99224
0.90652 1.21514 0.95003 1.01350 0.96791 1.21612 0.95596 0.97065
1.01759 1.21479 0.99556 0.96801 0.97402 1.21904 0.95389 1.00819
0.98414 1.21108 0.93954 0.93801 0.86352 0.88801 1.45979 1.64494
1.06605 1.17456 1.17632 0.78566 0.82669 0.85520 1.90812 1.46171
1.64967 1.38091 1.21281 0.95618 0.91513 0.91849 1.21749 0.99642
0.94097 0.99011 1.20527 0.92986 1.00994 0.88797 1.20698 1.05803
0.93277 0.95318 1.75432 1.14976 1.16105 1.05184 1.78126 1.12389
0.89765 1.16831 1.44733 1.48578 1.11978 1.07818 0.69006 1.19771
1.02596 0.90746 0.89598 1.66265 1.11331 1.40440 0.97690 0.93060
0.80646 0.95510 0.95427 0.91438 0.90903 0.91933 0.92082 0.91643
0.91993 0.91489 0.91807 0.75088 0.81485 0.82199
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16
2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16
3 Si 0.88 21.69 27.74 -169.99 -4.71 16.97 16
4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16
5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
6 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16
7 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16
8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16
9 N -0.75 -17.27 5.13 -59.91 -0.31 -17.57 16
10 C 0.16 2.99 5.57 -4.04 -0.02 2.97 16
11 C -0.10 -1.46 1.80 -90.62 -0.16 -1.62 16
12 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
13 C -0.11 -1.44 5.08 -26.73 -0.14 -1.58 16
14 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16
15 C -0.11 -1.11 5.92 -26.73 -0.16 -1.27 16
16 C -0.13 -1.33 5.49 -26.73 -0.15 -1.47 16
17 C 0.15 1.86 1.90 -67.93 -0.13 1.73 16
18 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16
19 N -0.70 -8.37 4.29 -54.66 -0.23 -8.60 16
20 C 0.57 7.14 7.77 -12.20 -0.09 7.05 16
21 O -0.53 -7.51 15.95 5.35 0.09 -7.43 16
22 C 0.15 1.69 6.74 -82.93 -0.56 1.13 16
23 C -0.12 -1.07 9.55 -39.45 -0.38 -1.44 16
24 C 0.00 -0.02 10.16 -39.45 -0.40 -0.42 16
25 C -0.02 -0.25 7.38 -84.90 -0.63 -0.88 16
26 N -0.24 -2.79 12.43 32.12 0.40 -2.39 16
27 N 0.01 0.13 13.28 60.35 0.80 0.93 16
28 N -0.40 -3.65 7.06 31.13 0.22 -3.43 16
29 H 0.46 2.72 8.96 -190.27 -1.71 1.02 16
30 C 0.22 2.38 8.56 -156.28 -1.34 1.04 16
31 N -0.44 -5.01 9.54 -8.91 -0.08 -5.09 16
32 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16
33 H 0.36 8.00 4.71 -40.82 -0.19 7.81 16
34 H 0.03 0.51 7.30 -51.93 -0.38 0.13 16
35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
37 H 0.07 1.10 7.18 -51.93 -0.37 0.73 16
38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
44 H 0.41 4.83 7.70 -40.82 -0.31 4.52 16
45 H 0.17 1.20 7.61 -52.49 -0.40 0.80 16
46 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16
LS Contribution 376.70 15.07 5.68 5.68
Total: -1.00 -33.99 376.70 -9.52 -43.52
By element:
Atomic # 1 Polarization: 16.58 SS G_CDS: -7.58 Total: 9.01 kcal
Atomic # 6 Polarization: 1.42 SS G_CDS: -4.56 Total: -3.15 kcal
Atomic # 7 Polarization: -66.17 SS G_CDS: 1.57 Total: -64.60 kcal
Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.43 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -33.99 -9.52 -43.52 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001268764356.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.002 kcal
(2) G-P(sol) polarization free energy of solvation -33.994 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.484 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds