Wall clock time and date at job start Wed Apr 1 2020 04:14:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31611 * 1
3 3 Si 1.86800 * 120.00105 * 2 1
4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1
5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1
6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1
7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1
9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1
10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2
11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7
12 12 H 1.08999 * 109.47456 * 54.99631 * 11 10 9
13 13 C 1.53008 * 109.46909 * 294.99709 * 11 10 9
14 14 C 1.52996 * 109.46909 * 179.97438 * 13 11 10
15 15 C 1.53005 * 109.47324 * 59.99979 * 14 13 11
16 16 C 1.52994 * 109.47099 * 299.99749 * 15 14 13
17 17 C 1.53003 * 109.46945 * 60.00218 * 16 15 14
18 18 H 1.08993 * 109.47368 * 59.99459 * 17 16 15
19 19 N 1.46499 * 109.47155 * 180.02562 * 17 16 15
20 20 C 1.34780 * 119.99848 * 274.99884 * 19 17 16
21 21 O 1.21517 * 120.00046 * 359.97438 * 20 19 17
22 22 C 1.48118 * 119.99640 * 180.02562 * 20 19 17
23 23 C 1.39821 * 119.37010 * 179.72856 * 22 20 19
24 24 C 1.36966 * 119.60874 * 179.71968 * 23 22 20
25 25 C 1.39817 * 118.24946 * 0.53976 * 24 23 22
26 26 N 1.34656 * 135.00336 * 179.73021 * 25 24 23
27 27 N 1.28673 * 109.15655 * 179.97438 * 26 25 24
28 28 N 1.28763 * 111.84938 * 359.97438 * 27 26 25
29 29 H 0.96995 * 125.86446 * 180.02562 * 28 27 26
30 30 C 1.37255 * 108.28289 * 0.02562 * 28 27 26
31 31 N 1.31948 * 134.70895 * 180.02562 * 30 28 27
32 32 H 0.97008 * 120.00329 * 359.97438 * 1 2 3
33 33 H 0.97001 * 119.99803 * 359.97438 * 9 7 2
34 34 H 1.09004 * 109.46963 * 299.72226 * 10 9 7
35 35 H 1.08994 * 109.47567 * 59.72378 * 10 9 7
36 36 H 1.09000 * 109.46973 * 299.99649 * 13 11 10
37 37 H 1.08995 * 109.47053 * 60.00309 * 13 11 10
38 38 H 1.09005 * 109.47318 * 180.02562 * 14 13 11
39 39 H 1.08999 * 109.47456 * 299.99922 * 14 13 11
40 40 H 1.09000 * 109.46555 * 60.00297 * 15 14 13
41 41 H 1.09001 * 109.47223 * 179.97438 * 15 14 13
42 42 H 1.08995 * 109.47006 * 179.97438 * 16 15 14
43 43 H 1.08994 * 109.47504 * 300.00329 * 16 15 14
44 44 H 0.97000 * 120.00048 * 94.99523 * 19 17 16
45 45 H 1.07998 * 120.19683 * 0.02562 * 23 22 20
46 46 H 1.08002 * 120.87888 * 180.23828 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4976 2.0465 -1.4001
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4402 0.7001
7 6 2.0102 -1.2021 -0.0005
8 1 1.4702 -2.1375 -0.0014
9 7 3.3796 -1.2021 0.0000
10 6 4.1121 -2.4708 -0.0067
11 6 5.6163 -2.1913 -0.0115
12 1 5.8690 -1.5479 0.8313
13 6 6.0013 -1.4947 -1.3183
14 6 7.5054 -1.2145 -1.3228
15 6 8.2704 -2.5343 -1.2037
16 6 7.8854 -3.2308 0.1029
17 6 6.3813 -3.5110 0.1075
18 1 6.1290 -4.1544 -0.7353
19 7 6.0124 -4.1774 1.3589
20 6 6.1311 -5.5153 1.4703
21 8 6.5435 -6.1689 0.5326
22 6 5.7576 -6.1891 2.7354
23 6 5.8805 -7.5783 2.8347
24 6 5.5421 -8.2058 4.0042
25 6 5.0702 -7.4233 5.0625
26 7 4.6502 -7.6723 6.3174
27 7 4.3179 -6.5635 6.8793
28 7 4.4822 -5.5587 6.0910
29 1 4.2961 -4.6314 6.3060
30 6 4.9657 -6.0250 4.8941
31 7 5.3099 -5.4644 3.7503
32 1 -0.4851 0.8401 0.0004
33 1 3.8646 -0.3620 0.0004
34 1 3.8521 -3.0451 0.8825
35 1 3.8454 -3.0397 -0.8974
36 1 5.7487 -2.1381 -2.1611
37 1 5.4568 -0.5543 -1.4029
38 1 7.7797 -0.7179 -2.2536
39 1 7.7577 -0.5710 -0.4801
40 1 8.0181 -3.1777 -2.0466
41 1 9.3420 -2.3347 -1.2074
42 1 8.4300 -4.1711 0.1876
43 1 8.1376 -2.5873 0.9457
44 1 5.6829 -3.6557 2.1074
45 1 6.2449 -8.1527 1.9959
46 1 5.6326 -9.2773 4.1047
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001268764356.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:14:44
Heat of formation + Delta-G solvation = 68.209510 kcal
Electronic energy + Delta-G solvation = -29871.629801 eV
Core-core repulsion = 25797.230604 eV
Total energy + Delta-G solvation = -4074.399197 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.170 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-44.57114 -41.60643 -40.22610 -39.03391 -36.58931 -35.62330 -35.19083 -33.86104
-33.02056 -32.29637 -31.61832 -30.42155 -27.34763 -26.69835 -25.13452 -24.45462
-23.96392 -23.43807 -22.10899 -21.78206 -21.03465 -20.12949 -19.80369 -19.56357
-18.89357 -17.80681 -17.39641 -16.66681 -16.51246 -16.29456 -16.08885 -15.77377
-15.48623 -15.01114 -14.78348 -14.66760 -14.62238 -14.51690 -14.39196 -14.04087
-13.68434 -13.66839 -13.58098 -13.05198 -13.00805 -12.85150 -12.79123 -12.67116
-12.20214 -12.14923 -11.94024 -11.86326 -11.71427 -11.40355 -11.27667 -11.15285
-10.98507 -10.75131 -10.47612 -10.30626 -10.03375 -9.31040 -8.04472 -5.38318
-1.11507 -0.20549 0.84157 0.97040 1.36013 1.40619 1.47860 1.57448
1.91983 2.46996 2.50230 2.53609 2.98906 3.16242 3.27028 3.40251
3.52826 3.65088 3.74978 3.86743 3.99058 4.18412 4.22512 4.25359
4.30260 4.42955 4.45296 4.51762 4.56261 4.68994 4.72477 4.84637
4.88200 5.04878 5.09249 5.13588 5.14664 5.24402 5.29526 5.31263
5.41323 5.42815 5.50366 5.59834 5.73015 6.08332 6.19017 6.43929
6.88413 7.00028 7.06334 7.81394 8.02531 9.17352
Molecular weight = 344.17amu
Principal moments of inertia in cm(-1)
A = 0.008887 B = 0.003357 C = 0.002623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3149.949498 B = 8339.121009 C =10670.910444
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.985 5.985
2 C -0.063 4.063
3 Si 0.956 3.044
4 H -0.277 1.277
5 H -0.296 1.296
6 H -0.247 1.247
7 C -0.236 4.236
8 H 0.049 0.951
9 N -0.752 5.752
10 C 0.162 3.838
11 C -0.091 4.091
12 H 0.084 0.916
13 C -0.110 4.110
14 C -0.116 4.116
15 C -0.111 4.111
16 C -0.118 4.118
17 C 0.158 3.842
18 H 0.079 0.921
19 N -0.695 5.695
20 C 0.573 3.427
21 O -0.546 6.546
22 C 0.139 3.861
23 C -0.116 4.116
24 C 0.012 3.988
25 C -0.034 4.034
26 N -0.258 5.258
27 N 0.007 4.993
28 N -0.386 5.386
29 H 0.472 0.528
30 C 0.202 3.798
31 N -0.453 5.453
32 H 0.258 0.742
33 H 0.368 0.632
34 H 0.022 0.978
35 H 0.013 0.987
36 H 0.061 0.939
37 H 0.055 0.945
38 H 0.074 0.926
39 H 0.069 0.931
40 H 0.062 0.938
41 H 0.082 0.918
42 H 0.065 0.935
43 H 0.074 0.926
44 H 0.414 0.586
45 H 0.185 0.815
46 H 0.196 0.804
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.348 -11.701 6.978 25.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.636 5.636
2 C -0.254 4.254
3 Si 0.783 3.217
4 H -0.203 1.203
5 H -0.223 1.223
6 H -0.171 1.171
7 C -0.367 4.367
8 H 0.067 0.933
9 N -0.398 5.398
10 C 0.035 3.965
11 C -0.110 4.110
12 H 0.103 0.897
13 C -0.148 4.148
14 C -0.153 4.153
15 C -0.149 4.149
16 C -0.157 4.157
17 C 0.053 3.947
18 H 0.097 0.903
19 N -0.345 5.345
20 C 0.357 3.643
21 O -0.423 6.423
22 C -0.015 4.015
23 C -0.140 4.140
24 C -0.019 4.019
25 C -0.162 4.162
26 N -0.134 5.134
27 N 0.023 4.977
28 N -0.120 5.120
29 H 0.324 0.676
30 C -0.043 4.043
31 N -0.170 5.170
32 H 0.067 0.933
33 H 0.202 0.798
34 H 0.040 0.960
35 H 0.032 0.968
36 H 0.080 0.920
37 H 0.074 0.926
38 H 0.093 0.907
39 H 0.087 0.913
40 H 0.081 0.919
41 H 0.101 0.899
42 H 0.084 0.916
43 H 0.092 0.908
44 H 0.251 0.749
45 H 0.203 0.797
46 H 0.213 0.787
Dipole moment (debyes) X Y Z Total
from point charges 20.905 -11.843 7.676 25.223
hybrid contribution -0.579 1.526 -0.283 1.657
sum 20.326 -10.317 7.393 23.963
Atomic orbital electron populations
1.69896 1.07322 1.26767 1.59605 1.25530 0.96095 1.01381 1.02416
0.85398 0.78801 0.79255 0.78281 1.20254 1.22313 1.17087 1.18992
0.82892 0.93250 1.41596 0.93289 1.42636 1.02251 1.04041 1.90882
1.20758 0.90695 0.87309 0.97702 1.21522 0.93014 0.96268 1.00211
0.89738 1.21518 0.97175 1.00165 0.95954 1.21565 0.93173 0.97760
1.02806 1.21476 1.00634 0.96092 0.96686 1.21842 0.93330 1.01098
0.99426 1.21025 0.95227 0.92417 0.86024 0.90279 1.45996 1.64376
1.06725 1.17375 1.17817 0.78058 0.82575 0.85812 1.90794 1.47242
1.65323 1.38941 1.21246 0.96473 0.92489 0.91317 1.21937 0.99145
0.93143 0.99781 1.20924 0.91044 1.02480 0.87438 1.21077 1.05985
0.93590 0.95574 1.75402 1.15789 1.16525 1.05731 1.78068 1.12505
0.90026 1.17083 1.44759 1.47709 1.12401 1.07180 0.67613 1.19937
1.03247 0.91251 0.89870 1.66182 1.11926 1.40888 0.97957 0.93314
0.79810 0.96011 0.96849 0.91994 0.92578 0.90726 0.91267 0.91882
0.89936 0.91648 0.90779 0.74885 0.79742 0.78734
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -63.32 13.97 21.65 0.30 -63.02 16
2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16
3 Si 0.96 44.50 27.74 68.60 1.90 46.40 16
4 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16
6 H -0.25 -10.10 6.52 99.48 0.65 -9.46 16
7 C -0.24 -13.52 10.47 84.03 0.88 -12.64 16
8 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16
9 N -0.75 -34.25 5.13 -343.46 -1.76 -36.01 16
10 C 0.16 5.99 5.57 86.38 0.48 6.47 16
11 C -0.09 -2.41 1.80 -10.79 -0.02 -2.43 16
12 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
13 C -0.11 -2.73 5.08 30.60 0.16 -2.58 16
14 C -0.12 -2.09 5.92 30.59 0.18 -1.91 16
15 C -0.11 -1.81 5.92 30.59 0.18 -1.63 16
16 C -0.12 -2.19 5.49 30.59 0.17 -2.03 16
17 C 0.16 3.67 1.90 44.99 0.09 3.76 16
18 H 0.08 2.11 7.58 -2.39 -0.02 2.09 16
19 N -0.70 -16.24 4.29 -445.14 -1.91 -18.15 16
20 C 0.57 13.94 7.77 86.87 0.68 14.61 16
21 O -0.55 -15.25 15.95 -3.77 -0.06 -15.31 16
22 C 0.14 2.97 6.74 42.05 0.28 3.25 16
23 C -0.12 -1.86 9.55 22.35 0.21 -1.64 16
24 C 0.01 0.16 10.16 22.35 0.23 0.39 16
25 C -0.03 -0.70 7.38 39.83 0.29 -0.40 16
26 N -0.26 -5.79 12.43 -52.29 -0.65 -6.44 16
27 N 0.01 0.14 13.28 37.02 0.49 0.63 16
28 N -0.39 -6.88 7.06 -55.42 -0.39 -7.27 16
29 H 0.47 5.38 8.96 -219.85 -1.97 3.41 16
30 C 0.20 4.29 8.56 134.30 1.15 5.44 16
31 N -0.45 -10.05 9.54 -182.09 -1.74 -11.78 16
32 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16
33 H 0.37 15.68 4.71 -92.71 -0.44 15.25 16
34 H 0.02 0.84 7.30 -2.38 -0.02 0.82 16
35 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
37 H 0.06 1.59 7.18 -2.39 -0.02 1.57 16
38 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16
39 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16
40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
41 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16
42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
43 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
44 H 0.41 9.42 7.70 -92.71 -0.71 8.70 16
45 H 0.19 2.26 7.61 -2.91 -0.02 2.24 16
46 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16
Total: -1.00 -74.96 376.70 -0.52 -75.48
By element:
Atomic # 1 Polarization: 32.16 SS G_CDS: -2.13 Total: 30.03 kcal
Atomic # 6 Polarization: 0.01 SS G_CDS: 5.42 Total: 5.43 kcal
Atomic # 7 Polarization: -136.37 SS G_CDS: -5.66 Total: -142.03 kcal
Atomic # 8 Polarization: -15.25 SS G_CDS: -0.06 Total: -15.31 kcal
Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal
Total: -74.96 -0.52 -75.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001268764356.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.688 kcal
(2) G-P(sol) polarization free energy of solvation -74.959 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.729 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.478 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.210 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds