Wall clock time and date at job start Wed Apr 1 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99937 * 2 1 4 4 C 1.50702 * 119.99878 * 180.28365 * 2 1 3 5 5 H 1.08999 * 109.47384 * 44.72009 * 4 2 1 6 6 C 1.53001 * 109.46902 * 284.71925 * 4 2 1 7 7 N 1.46499 * 109.47151 * 164.72062 * 4 2 1 8 8 C 1.46605 * 124.28813 * 239.72672 * 7 4 2 9 9 C 1.54181 * 105.88629 * 163.67494 * 8 7 4 10 10 F 1.39902 * 114.01380 * 146.44213 * 9 8 7 11 11 C 1.54604 * 109.53543 * 274.76530 * 9 8 7 12 12 N 1.48529 * 103.26517 * 145.85866 * 11 9 8 13 13 C 1.46902 * 110.99653 * 199.99873 * 12 11 9 14 14 C 1.53005 * 109.47100 * 187.30037 * 13 12 11 15 15 C 1.53001 * 109.47027 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46895 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99886 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99826 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99876 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46951 * 90.00315 * 20 18 16 22 22 H 1.48501 * 109.46812 * 209.99916 * 20 18 16 23 23 H 1.48497 * 109.46847 * 329.99858 * 20 18 16 24 24 C 1.47818 * 105.84818 * 320.52760 * 12 11 9 25 25 C 1.54080 * 107.27556 * 25.21252 * 24 12 11 26 26 F 1.39892 * 112.61977 * 122.65848 * 25 24 12 27 27 C 1.34186 * 124.29030 * 60.02379 * 7 4 2 28 28 O 1.21278 * 124.68889 * 1.63216 * 27 7 4 29 29 H 1.09004 * 109.46986 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47178 * 119.99485 * 1 2 3 31 31 H 1.09006 * 109.46629 * 239.99681 * 1 2 3 32 32 H 1.09003 * 109.46967 * 180.02562 * 6 4 2 33 33 H 1.08999 * 109.47170 * 300.00216 * 6 4 2 34 34 H 1.09003 * 109.46946 * 60.00092 * 6 4 2 35 35 H 1.08999 * 110.15070 * 282.92539 * 8 7 4 36 36 H 1.08990 * 110.15369 * 44.67956 * 8 7 4 37 37 H 1.08993 * 110.66099 * 27.41696 * 11 9 8 38 38 H 1.08995 * 110.80320 * 264.36705 * 11 9 8 39 39 H 1.09002 * 109.47427 * 307.30292 * 13 12 11 40 40 H 1.09004 * 109.46951 * 67.30458 * 13 12 11 41 41 H 1.09002 * 109.47190 * 300.00401 * 14 13 12 42 42 H 1.09004 * 109.46874 * 60.00374 * 14 13 12 43 43 H 1.09002 * 109.47300 * 300.00133 * 15 14 13 44 44 H 1.09004 * 109.47151 * 60.00344 * 15 14 13 45 45 H 0.97002 * 120.00124 * 179.97438 * 19 18 16 46 46 H 1.08993 * 109.88469 * 265.78961 * 24 12 11 47 47 H 1.09001 * 110.01092 * 144.70085 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0065 5 1 1.8098 -1.9813 -0.7329 6 6 2.1980 -1.9369 1.3856 7 7 3.6585 -1.0601 -0.3692 8 6 4.3258 -1.6518 -1.5329 9 6 5.6026 -0.8171 -1.7569 10 9 6.6857 -1.5540 -2.2480 11 6 5.2647 0.4247 -2.6137 12 7 6.1766 1.4672 -2.0773 13 6 5.6966 2.8129 -2.4192 14 6 6.7474 3.8479 -2.0120 15 6 6.2472 5.2494 -2.3675 16 6 7.2824 6.2688 -1.9670 17 1 8.2045 5.9490 -1.5048 18 6 7.0517 7.6097 -2.1898 19 7 5.9285 7.9992 -2.7522 20 14 8.3346 8.8733 -1.6927 21 1 9.2696 9.1008 -2.8239 22 1 7.6620 10.1500 -1.3421 23 1 9.0919 8.3737 -0.5172 24 6 6.1991 1.2691 -0.6126 25 6 5.8469 -0.2069 -0.3451 26 9 6.8387 -0.8734 0.3823 27 6 4.4923 -0.2701 0.3246 28 8 4.2001 0.3123 1.3474 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8900 31 1 -0.3633 -0.5139 0.8900 32 1 2.7434 -2.8807 1.3811 33 1 2.6487 -1.2607 2.1121 34 1 1.1578 -2.1192 1.6555 35 1 4.5842 -2.6909 -1.3293 36 1 3.6795 -1.5894 -2.4082 37 1 4.2237 0.7161 -2.4748 38 1 5.4730 0.2366 -3.6669 39 1 5.5229 2.8747 -3.4935 40 1 4.7656 3.0122 -1.8885 41 1 6.9211 3.7861 -0.9377 42 1 7.6784 3.6485 -2.5427 43 1 6.0732 5.3115 -3.4417 44 1 5.3163 5.4485 -1.8365 45 1 5.7660 8.9427 -2.9086 46 1 5.4620 1.9177 -0.1394 47 1 7.1923 1.4899 -0.2215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274044191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:21 Heat of formation + Delta-G solvation = -143.816585 kcal Electronic energy + Delta-G solvation = -32098.603405 eV Core-core repulsion = 27532.028129 eV Total energy + Delta-G solvation = -4566.575275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.56866 -47.57928 -41.45951 -39.51581 -38.03005 -36.66783 -34.49194 -33.38605 -31.80188 -30.40390 -29.78654 -29.16110 -26.82569 -26.11889 -24.96584 -23.41527 -21.70100 -21.48660 -21.10051 -19.82483 -19.33726 -18.05447 -17.17007 -16.76318 -16.39296 -16.30225 -16.08680 -15.73558 -15.59230 -15.40756 -15.07975 -14.82437 -14.50449 -14.46671 -14.39578 -14.07635 -13.93789 -13.47229 -13.36608 -13.27635 -13.17109 -12.96927 -12.72398 -12.58873 -12.38592 -12.33532 -12.20342 -12.10818 -11.75323 -11.35987 -11.27450 -10.87755 -10.77085 -10.57255 -10.48288 -10.28609 -9.96196 -9.64943 -9.32555 -9.21654 -9.03349 -8.47818 -8.29911 -5.95312 -3.97081 1.55538 2.02364 2.06871 3.15415 3.27330 3.36359 3.37759 3.42091 3.46627 3.56406 3.79781 3.95953 4.15388 4.32391 4.38321 4.40837 4.51509 4.57679 4.73632 4.81324 4.87223 4.93443 4.99421 5.03747 5.17175 5.29767 5.39918 5.40716 5.51349 5.53372 5.60359 5.65991 5.81425 5.84487 5.90043 6.24268 6.39295 6.55183 6.61662 6.82877 7.11216 7.13565 7.18695 7.61116 7.72127 7.86195 8.04779 8.48076 9.09806 9.66754 11.16223 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.002980 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.774670 B = 9394.271593 C =10459.200377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.331 3.669 3 O -0.419 6.419 4 C 0.111 3.889 5 H 0.123 0.877 6 C -0.163 4.163 7 N -0.607 5.607 8 C 0.090 3.910 9 C 0.094 3.906 10 F -0.156 7.156 11 C 0.021 3.979 12 N -0.504 5.504 13 C 0.046 3.954 14 C -0.104 4.104 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.029 3.971 25 C 0.065 3.935 26 F -0.158 7.158 27 C 0.522 3.478 28 O -0.474 6.474 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.014 0.986 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 -27.599 2.439 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.202 3.798 3 O -0.289 6.289 4 C 0.007 3.993 5 H 0.140 0.860 6 C -0.221 4.221 7 N -0.343 5.343 8 C -0.034 4.034 9 C 0.074 3.926 10 F -0.136 7.136 11 C -0.107 4.107 12 N -0.228 5.228 13 C -0.081 4.081 14 C -0.142 4.142 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.100 4.100 25 C 0.041 3.959 26 F -0.138 7.138 27 C 0.305 3.695 28 O -0.345 6.345 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.040 -26.604 2.763 29.332 hybrid contribution -0.028 0.562 0.518 0.765 sum -12.068 -26.042 3.281 28.889 Atomic orbital electron populations 1.22283 0.93132 1.05685 1.04505 1.24989 0.92415 0.90157 0.72256 1.90547 1.71558 1.34257 1.32495 1.21578 0.80120 0.97392 1.00168 0.85973 1.22098 1.03588 1.01812 0.94621 1.47875 1.10651 1.47995 1.27769 1.22481 0.93089 0.98033 0.89755 1.22478 0.84985 0.92041 0.93134 1.92942 1.54852 1.77562 1.88270 1.23763 0.97122 0.89219 1.00621 1.65029 1.46184 1.04383 1.07155 1.22589 0.98071 0.86181 1.01216 1.21640 0.97156 0.95316 1.00137 1.19071 0.96507 0.89137 0.96803 1.21242 1.03363 0.91350 1.39624 0.92615 1.25025 0.95497 0.98661 0.95330 1.69969 1.24243 1.15793 1.43648 0.86591 0.81606 0.80880 0.78926 1.20662 1.21276 1.19837 1.23396 1.05264 0.90243 0.91081 1.22724 0.86366 0.95950 0.90820 1.92945 1.61250 1.81330 1.78289 1.20355 0.85978 0.78696 0.84433 1.90765 1.78311 1.43346 1.22070 0.89415 0.88809 0.88792 0.90814 0.90345 0.90199 0.88696 0.87918 0.91093 0.87209 0.90376 0.94274 0.93378 0.92257 0.96555 0.96746 0.93070 0.90191 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.99 10.25 36.01 0.37 -0.62 16 2 C 0.33 3.01 6.40 -29.03 -0.19 2.82 16 3 O -0.42 -6.22 15.01 -14.25 -0.21 -6.44 16 4 C 0.11 0.75 3.20 -69.08 -0.22 0.53 16 5 H 0.12 0.30 8.07 -51.93 -0.42 -0.12 16 6 C -0.16 -1.01 9.17 37.16 0.34 -0.67 16 7 N -0.61 -5.89 2.72 -166.56 -0.45 -6.34 16 8 C 0.09 0.67 6.49 -3.37 -0.02 0.64 16 9 C 0.09 1.05 1.93 -87.70 -0.17 0.88 16 10 F -0.16 -1.93 17.11 2.25 0.04 -1.89 16 11 C 0.02 0.25 5.68 -2.08 -0.01 0.24 16 12 N -0.50 -7.89 5.26 -230.69 -1.21 -9.10 16 13 C 0.05 0.83 4.76 -3.82 -0.02 0.81 16 14 C -0.10 -2.26 5.21 -26.73 -0.14 -2.40 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 20 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.03 0.46 5.27 -2.76 -0.01 0.45 16 25 C 0.06 0.91 1.80 -89.49 -0.16 0.75 16 26 F -0.16 -2.40 16.97 2.25 0.04 -2.36 16 27 C 0.52 7.33 5.52 -10.98 -0.06 7.27 16 28 O -0.47 -8.24 14.55 -14.69 -0.21 -8.45 16 29 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.28 7.92 -51.93 -0.41 -0.13 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.77 6.72 -51.93 -0.35 0.42 16 34 H 0.08 0.27 7.92 -51.93 -0.41 -0.15 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.46 7.94 -51.93 -0.41 0.04 16 37 H 0.07 0.82 7.77 -51.93 -0.40 0.42 16 38 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 40 H 0.04 0.73 7.81 -51.93 -0.41 0.33 16 41 H 0.05 1.05 7.52 -51.93 -0.39 0.66 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.08 1.43 6.83 -51.93 -0.35 1.07 16 47 H 0.11 1.78 8.09 -51.93 -0.42 1.36 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -37.19 386.83 -8.64 -45.83 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -7.32 Total: -4.73 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -0.84 Total: -2.77 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.93 Total: -42.33 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.43 Total: -14.89 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.08 Total: -4.25 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.19 -8.64 -45.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274044191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.987 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds