Wall clock time and date at job start Wed Apr 1 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99937 * 2 1 4 4 C 1.50702 * 119.99878 * 180.28365 * 2 1 3 5 5 H 1.08999 * 109.47384 * 44.72009 * 4 2 1 6 6 C 1.53001 * 109.46902 * 284.71925 * 4 2 1 7 7 N 1.46499 * 109.47151 * 164.72062 * 4 2 1 8 8 C 1.46605 * 124.28813 * 239.72672 * 7 4 2 9 9 C 1.54181 * 105.88629 * 163.67494 * 8 7 4 10 10 F 1.39902 * 114.01380 * 146.44213 * 9 8 7 11 11 C 1.54604 * 109.53543 * 274.76530 * 9 8 7 12 12 N 1.48529 * 103.26517 * 145.85866 * 11 9 8 13 13 C 1.46902 * 110.99653 * 199.99873 * 12 11 9 14 14 C 1.53005 * 109.47100 * 187.30037 * 13 12 11 15 15 C 1.53001 * 109.47027 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46895 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99886 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99826 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99876 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46951 * 90.00315 * 20 18 16 22 22 H 1.48501 * 109.46812 * 209.99916 * 20 18 16 23 23 H 1.48497 * 109.46847 * 329.99858 * 20 18 16 24 24 C 1.47818 * 105.84818 * 320.52760 * 12 11 9 25 25 C 1.54080 * 107.27556 * 25.21252 * 24 12 11 26 26 F 1.39892 * 112.61977 * 122.65848 * 25 24 12 27 27 C 1.34186 * 124.29030 * 60.02379 * 7 4 2 28 28 O 1.21278 * 124.68889 * 1.63216 * 27 7 4 29 29 H 1.09004 * 109.46986 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47178 * 119.99485 * 1 2 3 31 31 H 1.09006 * 109.46629 * 239.99681 * 1 2 3 32 32 H 1.09003 * 109.46967 * 180.02562 * 6 4 2 33 33 H 1.08999 * 109.47170 * 300.00216 * 6 4 2 34 34 H 1.09003 * 109.46946 * 60.00092 * 6 4 2 35 35 H 1.08999 * 110.15070 * 282.92539 * 8 7 4 36 36 H 1.08990 * 110.15369 * 44.67956 * 8 7 4 37 37 H 1.08993 * 110.66099 * 27.41696 * 11 9 8 38 38 H 1.08995 * 110.80320 * 264.36705 * 11 9 8 39 39 H 1.09002 * 109.47427 * 307.30292 * 13 12 11 40 40 H 1.09004 * 109.46951 * 67.30458 * 13 12 11 41 41 H 1.09002 * 109.47190 * 300.00401 * 14 13 12 42 42 H 1.09004 * 109.46874 * 60.00374 * 14 13 12 43 43 H 1.09002 * 109.47300 * 300.00133 * 15 14 13 44 44 H 1.09004 * 109.47151 * 60.00344 * 15 14 13 45 45 H 0.97002 * 120.00124 * 179.97438 * 19 18 16 46 46 H 1.08993 * 109.88469 * 265.78961 * 24 12 11 47 47 H 1.09001 * 110.01092 * 144.70085 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0065 5 1 1.8098 -1.9813 -0.7329 6 6 2.1980 -1.9369 1.3856 7 7 3.6585 -1.0601 -0.3692 8 6 4.3258 -1.6518 -1.5329 9 6 5.6026 -0.8171 -1.7569 10 9 6.6857 -1.5540 -2.2480 11 6 5.2647 0.4247 -2.6137 12 7 6.1766 1.4672 -2.0773 13 6 5.6966 2.8129 -2.4192 14 6 6.7474 3.8479 -2.0120 15 6 6.2472 5.2494 -2.3675 16 6 7.2824 6.2688 -1.9670 17 1 8.2045 5.9490 -1.5048 18 6 7.0517 7.6097 -2.1898 19 7 5.9285 7.9992 -2.7522 20 14 8.3346 8.8733 -1.6927 21 1 9.2696 9.1008 -2.8239 22 1 7.6620 10.1500 -1.3421 23 1 9.0919 8.3737 -0.5172 24 6 6.1991 1.2691 -0.6126 25 6 5.8469 -0.2069 -0.3451 26 9 6.8387 -0.8734 0.3823 27 6 4.4923 -0.2701 0.3246 28 8 4.2001 0.3123 1.3474 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8900 31 1 -0.3633 -0.5139 0.8900 32 1 2.7434 -2.8807 1.3811 33 1 2.6487 -1.2607 2.1121 34 1 1.1578 -2.1192 1.6555 35 1 4.5842 -2.6909 -1.3293 36 1 3.6795 -1.5894 -2.4082 37 1 4.2237 0.7161 -2.4748 38 1 5.4730 0.2366 -3.6669 39 1 5.5229 2.8747 -3.4935 40 1 4.7656 3.0122 -1.8885 41 1 6.9211 3.7861 -0.9377 42 1 7.6784 3.6485 -2.5427 43 1 6.0732 5.3115 -3.4417 44 1 5.3163 5.4485 -1.8365 45 1 5.7660 8.9427 -2.9086 46 1 5.4620 1.9177 -0.1394 47 1 7.1923 1.4899 -0.2215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274044191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:20 Heat of formation + Delta-G solvation = -169.524177 kcal Electronic energy + Delta-G solvation = -32099.718170 eV Core-core repulsion = 27532.028129 eV Total energy + Delta-G solvation = -4567.690040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.62507 -48.60566 -42.34205 -40.39497 -39.19101 -37.66325 -36.07017 -34.74596 -33.41959 -31.38262 -30.84575 -30.02691 -28.28251 -27.17095 -26.00356 -24.80109 -23.03811 -22.67243 -22.02220 -21.49153 -20.12621 -19.00381 -18.53034 -18.02453 -17.70642 -17.25296 -17.09310 -16.72423 -16.58878 -16.49179 -16.34139 -16.04997 -15.90653 -15.41937 -15.34900 -15.18925 -15.00566 -14.90253 -14.58713 -14.28643 -14.17505 -13.80417 -13.69243 -13.63364 -13.39307 -13.34321 -13.18542 -13.09272 -12.86338 -12.78722 -12.68918 -12.54506 -12.41936 -12.24768 -11.91084 -11.58027 -11.45264 -11.18924 -11.04503 -10.90404 -10.58623 -9.95588 -9.78482 -8.23539 -6.34687 0.90601 1.01771 1.33876 1.36864 1.38960 1.50206 2.19315 2.32801 2.37900 2.48843 2.65415 2.89297 3.00800 3.09345 3.16411 3.41768 3.77803 3.90717 3.97974 4.01515 4.07004 4.11140 4.24136 4.26899 4.34021 4.44818 4.48749 4.51870 4.57878 4.59738 4.66941 4.70458 4.73951 4.80261 4.92939 5.04639 5.12989 5.21952 5.28540 5.44498 5.45135 5.57408 5.64663 5.71067 5.80447 6.21804 6.47216 6.70929 6.80930 7.34350 8.88538 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.002980 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.774670 B = 9394.271593 C =10459.200377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.327 3.673 3 O -0.492 6.492 4 C 0.103 3.897 5 H 0.185 0.815 6 C -0.160 4.160 7 N -0.597 5.597 8 C 0.094 3.906 9 C 0.102 3.898 10 F -0.161 7.161 11 C 0.020 3.980 12 N -0.509 5.509 13 C 0.062 3.938 14 C -0.091 4.091 15 C 0.028 3.972 16 C -0.546 4.546 17 H 0.057 0.943 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.267 1.267 24 C 0.029 3.971 25 C 0.052 3.948 26 F -0.169 7.169 27 C 0.515 3.485 28 O -0.524 6.524 29 H 0.065 0.935 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.024 0.976 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.000 1.000 44 H -0.015 1.015 45 H 0.265 0.735 46 H 0.051 0.949 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 -30.681 0.976 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.204 3.796 3 O -0.366 6.366 4 C 0.002 3.998 5 H 0.202 0.798 6 C -0.218 4.218 7 N -0.331 5.331 8 C -0.028 4.028 9 C 0.082 3.918 10 F -0.140 7.140 11 C -0.107 4.107 12 N -0.233 5.233 13 C -0.065 4.065 14 C -0.129 4.129 15 C -0.009 4.009 16 C -0.583 4.583 17 H 0.075 0.925 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.101 4.101 25 C 0.028 3.972 26 F -0.149 7.149 27 C 0.298 3.702 28 O -0.398 6.398 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.051 0.949 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.166 0.834 37 H 0.096 0.904 38 H 0.154 0.846 39 H 0.111 0.889 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.019 0.981 44 H 0.004 0.996 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.240 -29.761 1.267 32.597 hybrid contribution 0.291 1.484 0.979 1.801 sum -12.950 -28.277 2.246 31.182 Atomic orbital electron populations 1.22339 0.89985 1.05289 1.07435 1.25900 0.94388 0.89998 0.69359 1.90556 1.73125 1.36751 1.36214 1.22103 0.78213 0.97229 1.02250 0.79793 1.22105 1.05600 1.01012 0.93036 1.48027 1.11462 1.46228 1.27355 1.22815 0.91375 0.98268 0.90391 1.22514 0.86468 0.92535 0.90317 1.92938 1.55549 1.77495 1.88057 1.23953 0.96705 0.88101 1.01986 1.64938 1.47523 1.04006 1.06833 1.22260 0.95864 0.86797 1.01624 1.21379 0.98175 0.93879 0.99448 1.18943 0.94971 0.91833 0.95188 1.21663 1.03993 0.92573 1.40121 0.92509 1.25989 0.97816 1.00966 0.95018 1.70093 1.26169 1.16580 1.44386 0.85433 0.78758 0.77808 0.78978 1.19301 1.20505 1.19118 1.23241 1.03530 0.91995 0.91294 1.22867 0.86516 0.94725 0.93043 1.92908 1.61863 1.81266 1.78839 1.20362 0.86405 0.79138 0.84257 1.90732 1.79106 1.45624 1.24380 0.91631 0.85006 0.86230 0.89437 0.94877 0.86767 0.85488 0.83408 0.90362 0.84590 0.88938 0.95762 0.94404 0.92099 0.98130 0.99642 0.92664 0.93100 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 10.25 71.24 0.73 -0.67 16 2 C 0.33 5.49 6.40 29.10 0.19 5.68 16 3 O -0.49 -15.31 15.01 17.90 0.27 -15.05 16 4 C 0.10 1.04 3.20 44.25 0.14 1.18 16 5 H 0.19 -0.39 8.07 -2.39 -0.02 -0.41 16 6 C -0.16 -1.56 9.17 71.98 0.66 -0.90 16 7 N -0.60 -10.20 2.72 -799.60 -2.17 -12.37 16 8 C 0.09 0.97 6.49 86.76 0.56 1.53 16 9 C 0.10 2.06 1.93 -8.90 -0.02 2.04 16 10 F -0.16 -3.56 17.11 44.97 0.77 -2.79 16 11 C 0.02 0.44 5.68 86.53 0.49 0.93 16 12 N -0.51 -16.19 5.26 -883.78 -4.65 -20.84 16 13 C 0.06 2.30 4.76 86.30 0.41 2.71 16 14 C -0.09 -4.13 5.21 30.60 0.16 -3.97 16 15 C 0.03 1.59 4.97 29.85 0.15 1.74 16 16 C -0.55 -32.99 9.11 25.60 0.23 -32.75 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 19 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 20 Si 0.97 46.35 29.54 68.60 2.03 48.38 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 C 0.03 0.98 5.27 86.49 0.46 1.43 16 25 C 0.05 1.49 1.80 -10.06 -0.02 1.47 16 26 F -0.17 -5.27 16.97 44.97 0.76 -4.50 16 27 C 0.51 14.81 5.52 87.92 0.48 15.29 16 28 O -0.52 -19.69 14.55 16.34 0.24 -19.45 16 29 H 0.06 0.80 8.12 -2.38 -0.02 0.78 16 30 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.12 0.27 7.92 -2.38 -0.02 0.25 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.03 0.65 6.72 -2.39 -0.02 0.64 16 34 H 0.11 0.30 7.92 -2.39 -0.02 0.28 16 35 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.15 0.32 7.94 -2.39 -0.02 0.30 16 37 H 0.08 1.67 7.77 -2.39 -0.02 1.65 16 38 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.09 3.15 8.11 -2.39 -0.02 3.13 16 40 H 0.02 0.97 7.81 -2.38 -0.02 0.95 16 41 H 0.04 1.76 7.52 -2.39 -0.02 1.74 16 42 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H -0.01 -0.91 8.14 -2.38 -0.02 -0.92 16 45 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.05 2.03 6.83 -2.39 -0.02 2.01 16 47 H 0.09 3.40 8.09 -2.39 -0.02 3.38 16 Total: -1.00 -89.95 386.83 3.59 -86.35 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: 0.97 Total: 2.54 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.09 Total: -3.83 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -6.54 Total: -91.66 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: 0.51 Total: -34.49 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 1.53 Total: -7.29 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -89.95 3.59 -86.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274044191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.169 kcal (2) G-P(sol) polarization free energy of solvation -89.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds