Wall clock time and date at job start Wed Apr 1 2020 04:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.08999 * 109.47456 * 54.99631 * 11 10 9 13 13 C 1.53008 * 109.46909 * 294.99709 * 11 10 9 14 14 C 1.52996 * 109.46909 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47324 * 59.99979 * 14 13 11 16 16 C 1.52994 * 109.47099 * 299.99749 * 15 14 13 17 17 C 1.53003 * 109.46945 * 60.00218 * 16 15 14 18 18 H 1.09000 * 109.47163 * 179.97438 * 17 16 15 19 19 N 1.46494 * 109.47672 * 59.99777 * 17 16 15 20 20 C 1.34777 * 120.00106 * 84.99461 * 19 17 16 21 21 O 1.21570 * 119.99859 * 0.02562 * 20 19 17 22 22 C 1.47725 * 119.99986 * 180.02562 * 20 19 17 23 23 C 1.40111 * 120.35215 * 359.72187 * 22 20 19 24 24 N 1.31259 * 121.14855 * 179.72350 * 23 22 20 25 25 C 1.32721 * 121.80281 * 0.58765 * 24 23 22 26 26 N 1.37114 * 133.40801 * 179.68464 * 25 24 23 27 27 H 0.96998 * 126.59110 * 0.02562 * 26 25 24 28 28 N 1.40192 * 106.81823 * 180.02562 * 26 25 24 29 29 N 1.28666 * 109.50841 * 359.97438 * 28 26 25 30 30 C 1.35332 * 110.00232 * 0.02562 * 29 28 26 31 31 C 1.39427 * 120.34722 * 180.02562 * 22 20 19 32 32 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 34 34 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 35 35 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 36 36 H 1.09000 * 109.46973 * 299.99649 * 13 11 10 37 37 H 1.08995 * 109.47053 * 60.00309 * 13 11 10 38 38 H 1.08999 * 109.47456 * 299.99922 * 14 13 11 39 39 H 1.09005 * 109.47318 * 180.02562 * 14 13 11 40 40 H 1.09001 * 109.47223 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46555 * 60.00297 * 15 14 13 42 42 H 1.08994 * 109.47504 * 300.00329 * 16 15 14 43 43 H 1.08995 * 109.47006 * 179.97438 * 16 15 14 44 44 H 0.97000 * 119.99683 * 265.00777 * 19 17 16 45 45 H 1.08000 * 119.42681 * 0.03390 * 23 22 20 46 46 H 1.07993 * 120.95867 * 359.95561 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.3798 -4.7170 -0.8298 13 6 0.2684 -4.8045 1.3198 14 6 -0.7263 -5.9670 1.3250 15 6 0.0340 -7.2894 1.2059 16 6 0.8292 -7.3046 -0.1011 17 6 1.8240 -6.1421 -0.1063 18 1 2.3908 -6.1531 -1.0372 19 7 2.7430 -6.2806 1.0261 20 6 3.8421 -7.0523 0.9115 21 8 4.0710 -7.6330 -0.1317 22 6 4.7685 -7.1924 2.0536 23 6 4.5149 -6.5218 3.2574 24 7 5.3246 -6.6394 4.2837 25 6 6.4212 -7.3849 4.2276 26 7 7.4153 -7.6678 5.1286 27 1 7.4826 -7.3374 6.0381 28 7 8.3157 -8.5266 4.4828 29 7 7.9083 -8.7533 3.2836 30 6 6.7528 -8.0874 3.0535 31 6 5.9079 -7.9884 1.9429 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 2.6849 -3.7190 -0.8822 35 1 2.6842 -3.7101 0.8977 36 1 0.9522 -4.9072 2.1623 37 1 -0.2736 -3.8627 1.4044 38 1 -1.4101 -5.8639 0.4824 39 1 -1.2932 -5.9560 2.2559 40 1 -0.6746 -8.1176 1.2100 41 1 0.7177 -7.3925 2.0485 42 1 0.1455 -7.2014 -0.9437 43 1 1.3712 -8.2464 -0.1857 44 1 2.5604 -5.8171 1.8583 45 1 3.6352 -5.9012 3.3440 46 1 6.1315 -8.5138 1.0263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275767527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:53 Heat of formation + Delta-G solvation = 88.465791 kcal Electronic energy + Delta-G solvation = -29911.273798 eV Core-core repulsion = 25837.752979 eV Total energy + Delta-G solvation = -4073.520818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.81187 -40.63576 -39.10647 -37.95998 -34.71085 -34.43164 -33.88580 -32.15263 -31.98395 -31.30889 -29.82130 -29.34024 -25.59616 -25.16428 -24.71878 -23.13491 -23.04260 -22.32138 -21.50765 -20.62603 -19.24999 -19.07783 -18.92577 -17.47679 -17.01618 -16.86973 -16.56117 -15.65597 -15.40854 -14.97706 -14.74228 -14.44737 -14.18968 -14.09523 -13.75668 -13.64684 -13.40735 -13.28383 -13.10850 -12.99892 -12.79494 -12.40478 -12.19050 -12.02276 -11.95716 -11.72887 -11.46739 -10.93797 -10.92204 -10.77790 -10.53306 -10.39214 -10.22393 -10.01714 -9.92220 -9.88997 -9.80049 -9.67494 -9.52326 -9.03104 -8.89082 -6.95038 -5.80223 -3.08505 -0.25093 0.18931 1.54466 1.61396 2.49298 2.85312 3.30364 3.40869 3.41275 3.47337 3.48974 3.77381 3.81459 4.15906 4.24475 4.51875 4.57391 4.77956 4.83244 4.86497 4.87710 5.18835 5.23806 5.27711 5.35731 5.52448 5.54760 5.58168 5.62465 5.65097 5.69560 5.77295 5.99085 6.08765 6.10903 6.18915 6.19547 6.21976 6.31204 6.40985 6.46734 6.63101 6.75799 6.81084 7.00183 7.29619 7.35954 7.67933 8.02348 8.38992 9.50574 10.07851 10.42295 11.42621 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009808 B = 0.002962 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.179342 B = 9449.892706 C =11317.792042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.159 3.841 11 C -0.103 4.103 12 H 0.088 0.912 13 C -0.111 4.111 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.156 3.844 18 H 0.092 0.908 19 N -0.707 5.707 20 C 0.570 3.430 21 O -0.532 6.532 22 C -0.204 4.204 23 C 0.216 3.784 24 N -0.486 5.486 25 C 0.294 3.706 26 N -0.483 5.483 27 H 0.455 0.545 28 N 0.018 4.982 29 N -0.191 5.191 30 C -0.075 4.075 31 C 0.084 3.916 32 H 0.254 0.746 33 H 0.384 0.616 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.400 0.600 45 H 0.179 0.821 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 -18.945 8.734 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.122 4.122 12 H 0.106 0.894 13 C -0.148 4.148 14 C -0.159 4.159 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.051 3.949 18 H 0.110 0.890 19 N -0.359 5.359 20 C 0.355 3.645 21 O -0.410 6.410 22 C -0.213 4.213 23 C 0.043 3.957 24 N -0.200 5.200 25 C 0.049 3.951 26 N -0.208 5.208 27 H 0.303 0.697 28 N 0.035 4.965 29 N -0.072 5.072 30 C -0.201 4.201 31 C 0.053 3.947 32 H 0.064 0.936 33 H 0.218 0.782 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.237 0.763 45 H 0.196 0.804 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.362 -19.654 8.882 22.789 hybrid contribution -0.549 1.675 0.346 1.797 sum 6.813 -17.978 9.228 21.326 Atomic orbital electron populations 1.69662 1.05065 1.25533 1.57906 1.24718 0.95507 0.97640 1.03050 0.86147 0.78822 0.84216 0.77196 1.20599 1.21871 1.21891 1.19255 0.91022 0.84176 1.42474 0.91255 1.42367 1.05828 0.99881 1.89441 1.20649 0.92972 0.85356 0.97858 1.21653 0.97879 0.93256 0.99402 0.89394 1.21541 0.97672 0.99149 0.96476 1.21595 0.98080 0.94432 1.01799 1.21501 0.98671 0.97590 0.97632 1.21911 0.97912 0.98470 0.98433 1.21043 0.89639 0.94776 0.89416 0.88991 1.46019 1.23630 1.48661 1.17563 1.17639 0.80739 0.79527 0.86588 1.90804 1.74457 1.46796 1.28927 1.20828 0.98965 1.04356 0.97120 1.23127 0.95310 0.91655 0.85646 1.66707 1.02643 1.18944 1.31690 1.19610 0.90960 0.95067 0.89421 1.47547 1.17734 1.40104 1.15411 0.69706 1.81747 1.10105 1.04357 1.00290 1.74902 1.08429 1.16206 1.07684 1.20406 0.97756 1.04920 0.96979 1.21084 0.87522 0.89862 0.96211 0.93576 0.78189 0.96347 0.96502 0.92807 0.90130 0.91826 0.92212 0.92403 0.92340 0.90805 0.91594 0.76330 0.80384 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.25 5.33 -59.91 -0.32 -17.57 16 10 C 0.16 2.90 5.42 -4.04 -0.02 2.87 16 11 C -0.10 -1.41 2.02 -90.62 -0.18 -1.59 16 12 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.11 -1.40 4.90 -26.73 -0.13 -1.53 16 14 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 15 C -0.12 -1.09 5.77 -26.73 -0.15 -1.24 16 16 C -0.13 -1.33 5.60 -26.73 -0.15 -1.48 16 17 C 0.16 1.83 2.23 -67.93 -0.15 1.68 16 18 H 0.09 1.24 7.57 -51.93 -0.39 0.84 16 19 N -0.71 -7.40 3.57 -54.79 -0.20 -7.60 16 20 C 0.57 6.52 7.74 -12.38 -0.10 6.43 16 21 O -0.53 -7.72 16.06 5.30 0.09 -7.63 16 22 C -0.20 -1.99 5.88 -104.88 -0.62 -2.60 16 23 C 0.22 1.88 10.69 -17.09 -0.18 1.70 16 24 N -0.49 -4.81 10.37 -12.03 -0.12 -4.93 16 25 C 0.29 2.98 8.49 -155.93 -1.32 1.66 16 26 N -0.48 -3.99 7.52 31.15 0.23 -3.75 16 27 H 0.45 2.17 8.96 -182.53 -1.64 0.53 16 28 N 0.02 0.18 13.82 60.35 0.83 1.02 16 29 N -0.19 -2.17 12.40 32.17 0.40 -1.77 16 30 C -0.08 -0.81 7.27 -84.74 -0.62 -1.43 16 31 C 0.08 0.84 9.75 -38.51 -0.38 0.46 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.38 9.49 6.85 -40.82 -0.28 9.21 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.30 7.61 -51.93 -0.40 -0.09 16 36 H 0.05 0.61 6.51 -51.93 -0.34 0.27 16 37 H 0.08 1.26 7.18 -51.93 -0.37 0.89 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.52 7.60 -51.93 -0.39 0.12 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.40 3.57 4.71 -40.82 -0.19 3.37 16 45 H 0.18 1.10 6.39 -52.49 -0.34 0.77 16 46 H 0.17 1.54 7.71 -52.49 -0.40 1.13 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -32.82 374.42 -9.40 -42.21 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.25 Total: 7.56 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -4.41 Total: -3.53 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 1.55 Total: -61.24 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.82 -9.40 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275767527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.680 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds