Wall clock time and date at job start Wed Apr 1 2020 04:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.08999 * 109.47456 * 54.99631 * 11 10 9 13 13 C 1.53008 * 109.46909 * 294.99709 * 11 10 9 14 14 C 1.52996 * 109.46909 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47324 * 59.99979 * 14 13 11 16 16 C 1.52994 * 109.47099 * 299.99749 * 15 14 13 17 17 C 1.53003 * 109.46945 * 60.00218 * 16 15 14 18 18 H 1.09000 * 109.47163 * 179.97438 * 17 16 15 19 19 N 1.46494 * 109.47672 * 59.99777 * 17 16 15 20 20 C 1.34777 * 120.00106 * 84.99461 * 19 17 16 21 21 O 1.21570 * 119.99859 * 0.02562 * 20 19 17 22 22 C 1.47725 * 119.99986 * 180.02562 * 20 19 17 23 23 C 1.40111 * 120.35215 * 359.72187 * 22 20 19 24 24 N 1.31259 * 121.14855 * 179.72350 * 23 22 20 25 25 C 1.32721 * 121.80281 * 0.58765 * 24 23 22 26 26 N 1.37114 * 133.40801 * 179.68464 * 25 24 23 27 27 H 0.96998 * 126.59110 * 0.02562 * 26 25 24 28 28 N 1.40192 * 106.81823 * 180.02562 * 26 25 24 29 29 N 1.28666 * 109.50841 * 359.97438 * 28 26 25 30 30 C 1.35332 * 110.00232 * 0.02562 * 29 28 26 31 31 C 1.39427 * 120.34722 * 180.02562 * 22 20 19 32 32 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 34 34 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 35 35 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 36 36 H 1.09000 * 109.46973 * 299.99649 * 13 11 10 37 37 H 1.08995 * 109.47053 * 60.00309 * 13 11 10 38 38 H 1.08999 * 109.47456 * 299.99922 * 14 13 11 39 39 H 1.09005 * 109.47318 * 180.02562 * 14 13 11 40 40 H 1.09001 * 109.47223 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46555 * 60.00297 * 15 14 13 42 42 H 1.08994 * 109.47504 * 300.00329 * 16 15 14 43 43 H 1.08995 * 109.47006 * 179.97438 * 16 15 14 44 44 H 0.97000 * 119.99683 * 265.00777 * 19 17 16 45 45 H 1.08000 * 119.42681 * 0.03390 * 23 22 20 46 46 H 1.07993 * 120.95867 * 359.95561 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.3798 -4.7170 -0.8298 13 6 0.2684 -4.8045 1.3198 14 6 -0.7263 -5.9670 1.3250 15 6 0.0340 -7.2894 1.2059 16 6 0.8292 -7.3046 -0.1011 17 6 1.8240 -6.1421 -0.1063 18 1 2.3908 -6.1531 -1.0372 19 7 2.7430 -6.2806 1.0261 20 6 3.8421 -7.0523 0.9115 21 8 4.0710 -7.6330 -0.1317 22 6 4.7685 -7.1924 2.0536 23 6 4.5149 -6.5218 3.2574 24 7 5.3246 -6.6394 4.2837 25 6 6.4212 -7.3849 4.2276 26 7 7.4153 -7.6678 5.1286 27 1 7.4826 -7.3374 6.0381 28 7 8.3157 -8.5266 4.4828 29 7 7.9083 -8.7533 3.2836 30 6 6.7528 -8.0874 3.0535 31 6 5.9079 -7.9884 1.9429 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 2.6849 -3.7190 -0.8822 35 1 2.6842 -3.7101 0.8977 36 1 0.9522 -4.9072 2.1623 37 1 -0.2736 -3.8627 1.4044 38 1 -1.4101 -5.8639 0.4824 39 1 -1.2932 -5.9560 2.2559 40 1 -0.6746 -8.1176 1.2100 41 1 0.7177 -7.3925 2.0485 42 1 0.1455 -7.2014 -0.9437 43 1 1.3712 -8.2464 -0.1857 44 1 2.5604 -5.8171 1.8583 45 1 3.6352 -5.9012 3.3440 46 1 6.1315 -8.5138 1.0263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275767527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:53 Heat of formation + Delta-G solvation = 66.131861 kcal Electronic energy + Delta-G solvation = -29912.242269 eV Core-core repulsion = 25837.752979 eV Total energy + Delta-G solvation = -4074.489290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.57542 -41.58081 -39.97763 -38.91729 -36.41294 -35.19959 -34.81670 -33.66742 -32.92252 -32.14138 -31.17824 -30.44360 -26.99059 -26.10121 -25.58649 -24.62859 -23.89928 -23.33600 -22.41234 -21.84136 -20.17272 -19.85706 -19.80973 -19.14025 -18.03467 -17.73247 -17.33199 -16.78765 -16.50330 -16.26593 -16.04054 -15.46229 -15.28128 -15.09749 -14.95726 -14.85463 -14.57765 -14.41213 -14.17768 -13.98995 -13.76910 -13.37382 -13.18654 -13.05735 -12.94846 -12.81762 -12.73763 -12.67005 -12.52729 -12.04904 -11.86676 -11.79956 -11.44818 -11.32036 -11.13357 -10.97760 -10.79770 -10.73709 -10.56105 -10.33806 -9.95342 -8.93627 -7.92407 -5.19354 -1.00326 -0.59237 0.83532 0.86453 1.48420 1.49531 1.58604 1.63482 1.96704 2.49233 2.57803 2.67435 3.02050 3.05587 3.40254 3.41786 3.53152 3.62864 3.77961 3.86662 3.91973 4.11262 4.16210 4.31405 4.47046 4.49524 4.55515 4.56173 4.63800 4.66025 4.75269 4.81809 4.90940 4.99911 5.09633 5.16622 5.25691 5.34595 5.39017 5.40428 5.51295 5.52799 5.60609 5.62432 5.66468 6.26546 6.30766 6.47090 6.54348 7.12879 7.38009 8.15094 8.38025 9.31059 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009808 B = 0.002962 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.179342 B = 9449.892706 C =11317.792042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.740 5.740 10 C 0.158 3.842 11 C -0.089 4.089 12 H 0.078 0.922 13 C -0.106 4.106 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.123 4.123 17 C 0.164 3.836 18 H 0.075 0.925 19 N -0.699 5.699 20 C 0.575 3.425 21 O -0.565 6.565 22 C -0.203 4.203 23 C 0.225 3.775 24 N -0.491 5.491 25 C 0.288 3.712 26 N -0.465 5.465 27 H 0.469 0.531 28 N 0.013 4.987 29 N -0.211 5.211 30 C -0.088 4.088 31 C 0.084 3.916 32 H 0.250 0.750 33 H 0.376 0.624 34 H 0.005 0.995 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.409 0.591 45 H 0.206 0.794 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -19.671 10.105 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.383 5.383 10 C 0.032 3.968 11 C -0.108 4.108 12 H 0.096 0.904 13 C -0.144 4.144 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.161 4.161 17 C 0.059 3.941 18 H 0.093 0.907 19 N -0.351 5.351 20 C 0.361 3.639 21 O -0.445 6.445 22 C -0.211 4.211 23 C 0.051 3.949 24 N -0.205 5.205 25 C 0.043 3.957 26 N -0.193 5.193 27 H 0.321 0.679 28 N 0.030 4.970 29 N -0.092 5.092 30 C -0.213 4.213 31 C 0.054 3.946 32 H 0.059 0.941 33 H 0.209 0.791 34 H 0.023 0.977 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.248 0.752 45 H 0.222 0.778 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.626 -20.403 10.294 24.092 hybrid contribution -0.577 1.868 -0.084 1.957 sum 7.049 -18.535 10.210 22.304 Atomic orbital electron populations 1.69799 1.06375 1.25838 1.59716 1.25448 0.96311 1.00707 1.03992 0.85181 0.78219 0.80404 0.76614 1.19390 1.22361 1.21973 1.19607 0.91325 0.85497 1.40708 0.91075 1.42543 1.05671 1.00910 1.89196 1.20802 0.93678 0.84843 0.97471 1.21471 0.96924 0.92462 0.99969 0.90413 1.21479 0.98086 0.98703 0.96153 1.21537 0.97512 0.93899 1.02310 1.21468 0.98849 0.97255 0.97158 1.21858 0.97544 0.97292 0.99454 1.20847 0.89783 0.94240 0.89219 0.90723 1.45908 1.23220 1.48456 1.17537 1.17772 0.80708 0.78906 0.86465 1.90797 1.75166 1.48177 1.30314 1.20649 0.98610 1.04923 0.96962 1.23520 0.95611 0.91034 0.84761 1.66811 1.02690 1.19099 1.31945 1.19765 0.91308 0.95073 0.89558 1.47541 1.16761 1.39124 1.15832 0.67931 1.81692 1.10450 1.04701 1.00171 1.74890 1.09019 1.17032 1.08259 1.20539 0.97891 1.05382 0.97535 1.21158 0.87511 0.89757 0.96224 0.94083 0.79117 0.97660 0.95279 0.91113 0.93354 0.92287 0.90995 0.90917 0.91283 0.90478 0.91750 0.75200 0.77767 0.81312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.33 13.06 21.65 0.28 -57.05 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.24 -12.89 9.99 84.03 0.84 -12.05 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.74 -35.12 5.33 -343.46 -1.83 -36.95 16 10 C 0.16 5.69 5.42 86.38 0.47 6.16 16 11 C -0.09 -2.38 2.02 -10.79 -0.02 -2.40 16 12 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 13 C -0.11 -2.54 4.90 30.60 0.15 -2.39 16 14 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 15 C -0.11 -1.71 5.77 30.59 0.18 -1.54 16 16 C -0.12 -2.29 5.60 30.59 0.17 -2.12 16 17 C 0.16 3.66 2.23 44.99 0.10 3.76 16 18 H 0.07 1.98 7.57 -2.39 -0.02 1.96 16 19 N -0.70 -13.28 3.57 -445.52 -1.59 -14.87 16 20 C 0.57 12.32 7.74 86.75 0.67 12.99 16 21 O -0.56 -15.98 16.06 -3.94 -0.06 -16.04 16 22 C -0.20 -3.61 5.88 -20.03 -0.12 -3.73 16 23 C 0.22 3.35 10.69 85.23 0.91 4.26 16 24 N -0.49 -8.62 10.37 -191.99 -1.99 -10.61 16 25 C 0.29 5.37 8.49 134.01 1.14 6.51 16 26 N -0.46 -6.97 7.52 -55.37 -0.42 -7.38 16 27 H 0.47 3.63 8.96 -213.26 -1.91 1.72 16 28 N 0.01 0.25 13.82 37.02 0.51 0.76 16 29 N -0.21 -4.68 12.40 -52.14 -0.65 -5.33 16 30 C -0.09 -1.80 7.27 39.63 0.29 -1.52 16 31 C 0.08 1.61 9.75 22.96 0.22 1.83 16 32 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.38 18.93 6.85 -92.71 -0.63 18.30 16 34 H 0.01 0.21 8.14 -2.38 -0.02 0.19 16 35 H 0.03 0.99 7.61 -2.39 -0.02 0.97 16 36 H 0.07 1.42 6.51 -2.39 -0.02 1.40 16 37 H 0.05 1.50 7.18 -2.39 -0.02 1.48 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 0.96 7.60 -2.39 -0.02 0.94 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.41 6.15 4.71 -92.71 -0.44 5.71 16 45 H 0.21 1.81 6.39 -2.91 -0.02 1.79 16 46 H 0.17 3.07 7.71 -2.91 -0.02 3.04 16 Total: -1.00 -70.33 374.42 0.01 -70.32 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -1.92 Total: 25.59 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.65 Total: 4.26 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -5.68 Total: -131.43 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.06 Total: -16.04 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.33 0.01 -70.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275767527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.452 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds