Wall clock time and date at job start Wed Apr 1 2020 03:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46898 * 2 1 4 4 F 1.39897 * 109.46878 * 240.00538 * 2 1 3 5 5 C 1.52995 * 109.47553 * 120.00330 * 2 1 3 6 6 C 1.52997 * 109.47305 * 185.00001 * 5 2 1 7 7 N 1.46900 * 109.47145 * 174.48038 * 6 5 2 8 8 C 1.49730 * 111.00095 * 176.01579 * 7 6 5 9 9 C 1.56097 * 106.51165 * 232.33618 * 8 7 6 10 10 C 1.52728 * 101.28356 * 336.11437 * 9 8 7 11 11 N 1.46503 * 112.35318 * 283.02114 * 10 9 8 12 12 C 1.34776 * 120.00076 * 298.98945 * 11 10 9 13 13 O 1.21284 * 120.00143 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00147 * 179.97438 * 12 11 10 15 15 S 1.80996 * 109.47431 * 179.97438 * 14 12 11 16 16 C 1.76195 * 100.00012 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00114 * 359.72376 * 16 15 14 18 18 C 1.38802 * 119.99606 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00583 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99628 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46855 * 90.00105 * 20 18 16 22 22 H 1.48497 * 109.47025 * 209.99952 * 20 18 16 23 23 H 1.48499 * 109.47271 * 330.00138 * 20 18 16 24 24 C 1.52492 * 119.68667 * 148.00390 * 10 9 8 25 25 C 1.56921 * 102.00435 * 211.52482 * 24 10 9 26 26 C 1.55882 * 106.17657 * 24.63868 * 25 24 10 27 27 C 1.42330 * 110.99711 * 58.83518 * 7 6 5 28 28 H 1.09002 * 106.00440 * 46.67232 * 27 7 6 29 29 H 1.09007 * 109.47310 * 299.99421 * 1 2 3 30 30 H 1.08997 * 109.47634 * 59.99434 * 1 2 3 31 31 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47157 * 64.99400 * 5 2 1 33 33 H 1.09001 * 109.46771 * 305.00148 * 5 2 1 34 34 H 1.09005 * 109.46885 * 54.48456 * 6 5 2 35 35 H 1.08992 * 109.47004 * 294.48399 * 6 5 2 36 36 H 1.09000 * 110.04827 * 113.07018 * 8 7 6 37 37 H 1.09004 * 110.04638 * 351.59463 * 8 7 6 38 38 H 1.09004 * 111.06217 * 218.10653 * 9 8 7 39 39 H 1.09006 * 111.06045 * 94.11520 * 9 8 7 40 40 H 0.96996 * 120.00107 * 118.98580 * 11 10 9 41 41 H 1.09001 * 109.46636 * 59.99488 * 14 12 11 42 42 H 1.08994 * 109.46971 * 299.99991 * 14 12 11 43 43 H 0.97006 * 120.00571 * 179.97438 * 19 18 16 44 44 H 1.09002 * 110.81169 * 328.70237 * 24 10 9 45 45 H 1.08990 * 110.82243 * 92.24052 * 24 10 9 46 46 H 1.09007 * 109.62742 * 265.65240 * 25 24 10 47 47 H 1.09000 * 110.42371 * 144.05526 * 25 24 10 48 48 H 1.09000 * 110.48838 * 247.11030 * 26 25 24 49 49 H 1.09008 * 110.48381 * 124.47182 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 9 1.9962 -0.6594 -1.1423 5 6 2.0400 -0.7213 1.2491 6 6 3.5648 -0.6133 1.3135 7 7 4.0436 -1.1895 2.5771 8 6 5.5398 -1.1891 2.6342 9 6 5.9709 -2.6483 2.9829 10 6 4.7156 -3.1730 3.6767 11 7 4.5900 -2.6784 5.0500 12 6 5.5398 -2.9697 5.9607 13 8 6.4983 -3.6417 5.6435 14 6 5.4110 -2.4604 7.3732 15 16 6.8319 -3.0160 8.3470 16 6 6.4326 -2.3002 9.9067 17 1 5.5295 -1.7186 10.0186 18 6 7.2820 -2.4787 10.9899 19 7 8.3853 -3.1830 10.8522 20 14 6.8590 -1.7192 12.6434 21 1 6.0501 -2.6793 13.4366 22 1 8.1105 -1.4020 13.3770 23 1 6.0802 -0.4729 12.4310 24 6 4.3464 -4.6476 3.5560 25 6 2.7791 -4.5977 3.6160 26 6 2.3712 -3.1729 3.1326 27 6 3.6553 -2.5537 2.6951 28 1 3.8936 -3.0178 1.7381 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.8574 0.4353 1.2584 35 1 4.0032 -1.1573 0.4770 36 1 5.8841 -0.5028 3.4079 37 1 5.9506 -0.8991 1.6671 38 1 6.8244 -2.6532 3.6609 39 1 6.1869 -3.2192 2.0798 40 1 3.8233 -2.1412 5.3038 41 1 4.4934 -2.8473 7.8166 42 1 5.3792 -1.3710 7.3651 43 1 8.9791 -3.3074 11.6091 44 1 4.6719 -5.0511 2.5971 45 1 4.7670 -5.2212 4.3817 46 1 2.4467 -4.7560 4.6420 47 1 2.3490 -5.3546 2.9601 48 1 1.9324 -2.6032 3.9518 49 1 1.6749 -3.2386 2.2965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278431673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:46 Heat of formation + Delta-G solvation = -78.454824 kcal Electronic energy + Delta-G solvation = -28786.332637 eV Core-core repulsion = 24788.804836 eV Total energy + Delta-G solvation = -3997.527801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.98722 -41.38909 -38.49362 -36.19496 -34.46323 -33.21139 -32.40833 -31.59057 -29.30451 -28.63454 -27.39082 -26.74451 -25.44948 -23.49349 -21.67720 -21.56721 -21.21458 -19.86000 -19.15102 -17.82742 -17.13552 -16.61255 -16.30817 -16.04847 -15.54123 -15.51378 -15.26707 -15.05616 -14.78678 -14.45125 -14.13861 -13.67815 -13.55200 -13.46260 -13.16657 -13.05203 -12.83770 -12.65769 -12.61017 -12.58022 -12.17328 -12.04032 -11.85295 -11.52894 -11.42640 -11.33552 -11.05223 -11.03520 -11.00324 -10.92405 -10.82739 -10.74866 -10.66992 -10.30640 -9.78597 -9.20775 -9.04956 -8.77676 -8.54612 -8.20336 -6.46866 -6.19788 -3.89600 3.04104 3.17679 3.23505 3.27262 3.30934 3.38961 3.78575 3.87904 4.12791 4.22680 4.28705 4.33646 4.48171 4.54673 4.70209 4.78799 4.83070 4.87977 4.98189 5.08910 5.14369 5.15383 5.18836 5.21579 5.30589 5.32864 5.35928 5.43037 5.48007 5.54109 5.57700 5.60336 5.71834 5.76381 5.76885 5.81848 5.92345 5.95071 5.99063 6.03533 6.13606 6.20038 6.24789 6.61405 6.84904 6.94320 7.61661 7.86532 8.37292 8.72487 9.25690 10.87557 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.002271 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.087638 B =12328.045173 C =12724.213496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.083 0.917 4 F -0.216 7.216 5 C -0.149 4.149 6 C 0.049 3.951 7 N -0.506 5.506 8 C 0.047 3.953 9 C -0.141 4.141 10 C 0.168 3.832 11 N -0.709 5.709 12 C 0.535 3.465 13 O -0.518 6.518 14 C -0.152 4.152 15 S -0.060 6.060 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.099 4.099 27 C 0.054 3.946 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.401 0.599 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 4.795 -22.441 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.101 0.899 4 F -0.197 7.197 5 C -0.187 4.187 6 C -0.079 4.079 7 N -0.229 5.229 8 C -0.079 4.079 9 C -0.180 4.180 10 C 0.080 3.920 11 N -0.363 5.363 12 C 0.322 3.678 13 O -0.392 6.392 14 C -0.303 4.303 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.161 4.161 25 C -0.156 4.156 26 C -0.137 4.137 27 C -0.057 4.057 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.676 3.911 -22.523 27.165 hybrid contribution -1.409 1.082 0.759 1.932 sum -16.085 4.993 -21.764 27.520 Atomic orbital electron populations 1.22365 0.94202 1.03628 1.03504 1.21577 0.94882 0.96306 0.82099 0.89886 1.92817 1.90308 1.83430 1.53193 1.22350 0.96166 1.02391 0.97773 1.22318 0.94664 1.00541 0.90330 1.62477 1.09640 1.17309 1.33504 1.23628 0.85384 0.97589 1.01290 1.22779 0.99276 0.95176 1.00725 1.21349 0.94922 0.93434 0.82338 1.45574 1.26108 1.56033 1.08562 1.20243 0.81834 0.79423 0.86350 1.90675 1.30856 1.37588 1.80123 1.23524 1.07263 1.04235 0.95275 1.85355 1.23596 1.69579 1.04778 1.22872 1.11238 1.38372 0.95788 0.90987 1.24985 0.94481 0.95137 0.98999 1.70014 1.11150 1.37555 1.31614 0.86183 0.77976 0.79347 0.82082 1.20294 1.20783 1.19707 1.22499 0.95294 0.95428 1.02838 1.22979 0.95329 0.95599 1.01731 1.21358 0.95417 0.95741 1.01210 1.21645 0.96616 0.89019 0.98430 0.95081 0.90506 0.91477 0.91426 0.90344 0.89044 0.90419 0.94238 0.89623 0.92498 0.88332 0.90730 0.76466 0.89449 0.89361 0.92229 0.90868 0.89875 0.91076 0.91494 0.90902 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 9.65 37.16 0.36 -0.52 16 2 C 0.09 0.56 3.96 -26.74 -0.11 0.45 16 3 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 4 F -0.22 -2.00 16.86 2.25 0.04 -1.96 16 5 C -0.15 -1.00 4.47 -26.73 -0.12 -1.12 16 6 C 0.05 0.40 4.52 -3.83 -0.02 0.39 16 7 N -0.51 -4.93 5.29 -225.14 -1.19 -6.12 16 8 C 0.05 0.51 6.85 -0.58 0.00 0.51 16 9 C -0.14 -1.75 5.95 -25.21 -0.15 -1.90 16 10 C 0.17 2.02 0.31 -129.93 -0.04 1.98 16 11 N -0.71 -9.61 4.81 -45.86 -0.22 -9.83 16 12 C 0.54 9.75 7.40 -10.98 -0.08 9.67 16 13 O -0.52 -11.24 14.00 5.55 0.08 -11.16 16 14 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 20 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 24 C -0.12 -1.41 6.15 -24.87 -0.15 -1.56 16 25 C -0.12 -1.08 6.86 -23.07 -0.16 -1.24 16 26 C -0.10 -0.82 5.62 -27.10 -0.15 -0.97 16 27 C 0.05 0.52 1.33 -69.74 -0.09 0.42 16 28 H 0.03 0.32 7.18 -51.93 -0.37 -0.05 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.56 5.47 -51.93 -0.28 0.28 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.36 7.89 -51.93 -0.41 -0.05 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.54 7.63 -51.93 -0.40 0.14 16 38 H 0.10 1.54 6.41 -51.93 -0.33 1.20 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 4.73 8.40 -40.82 -0.34 4.38 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.18 7.80 -51.93 -0.41 0.78 16 46 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 49 H 0.07 0.49 6.55 -51.92 -0.34 0.15 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -33.08 397.16 -10.45 -43.53 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.34 Total: 2.09 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.30 Total: -9.69 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.68 Total: -41.41 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.08 -10.45 -43.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278431673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.924 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds