Wall clock time and date at job start Wed Apr 1 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46898 * 2 1 4 4 F 1.39897 * 109.46878 * 240.00538 * 2 1 3 5 5 C 1.52995 * 109.47553 * 120.00330 * 2 1 3 6 6 C 1.52997 * 109.47305 * 185.00001 * 5 2 1 7 7 N 1.46900 * 109.47145 * 174.48038 * 6 5 2 8 8 C 1.49730 * 111.00095 * 176.01579 * 7 6 5 9 9 C 1.56097 * 106.51165 * 232.33618 * 8 7 6 10 10 C 1.52728 * 101.28356 * 336.11437 * 9 8 7 11 11 N 1.46503 * 112.35318 * 283.02114 * 10 9 8 12 12 C 1.34776 * 120.00076 * 298.98945 * 11 10 9 13 13 O 1.21284 * 120.00143 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00147 * 179.97438 * 12 11 10 15 15 S 1.80996 * 109.47431 * 179.97438 * 14 12 11 16 16 C 1.76195 * 100.00012 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00114 * 359.72376 * 16 15 14 18 18 C 1.38802 * 119.99606 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00583 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99628 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46855 * 90.00105 * 20 18 16 22 22 H 1.48497 * 109.47025 * 209.99952 * 20 18 16 23 23 H 1.48499 * 109.47271 * 330.00138 * 20 18 16 24 24 C 1.52492 * 119.68667 * 148.00390 * 10 9 8 25 25 C 1.56921 * 102.00435 * 211.52482 * 24 10 9 26 26 C 1.55882 * 106.17657 * 24.63868 * 25 24 10 27 27 C 1.42330 * 110.99711 * 58.83518 * 7 6 5 28 28 H 1.09002 * 106.00440 * 46.67232 * 27 7 6 29 29 H 1.09007 * 109.47310 * 299.99421 * 1 2 3 30 30 H 1.08997 * 109.47634 * 59.99434 * 1 2 3 31 31 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47157 * 64.99400 * 5 2 1 33 33 H 1.09001 * 109.46771 * 305.00148 * 5 2 1 34 34 H 1.09005 * 109.46885 * 54.48456 * 6 5 2 35 35 H 1.08992 * 109.47004 * 294.48399 * 6 5 2 36 36 H 1.09000 * 110.04827 * 113.07018 * 8 7 6 37 37 H 1.09004 * 110.04638 * 351.59463 * 8 7 6 38 38 H 1.09004 * 111.06217 * 218.10653 * 9 8 7 39 39 H 1.09006 * 111.06045 * 94.11520 * 9 8 7 40 40 H 0.96996 * 120.00107 * 118.98580 * 11 10 9 41 41 H 1.09001 * 109.46636 * 59.99488 * 14 12 11 42 42 H 1.08994 * 109.46971 * 299.99991 * 14 12 11 43 43 H 0.97006 * 120.00571 * 179.97438 * 19 18 16 44 44 H 1.09002 * 110.81169 * 328.70237 * 24 10 9 45 45 H 1.08990 * 110.82243 * 92.24052 * 24 10 9 46 46 H 1.09007 * 109.62742 * 265.65240 * 25 24 10 47 47 H 1.09000 * 110.42371 * 144.05526 * 25 24 10 48 48 H 1.09000 * 110.48838 * 247.11030 * 26 25 24 49 49 H 1.09008 * 110.48381 * 124.47182 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 9 1.9962 -0.6594 -1.1423 5 6 2.0400 -0.7213 1.2491 6 6 3.5648 -0.6133 1.3135 7 7 4.0436 -1.1895 2.5771 8 6 5.5398 -1.1891 2.6342 9 6 5.9709 -2.6483 2.9829 10 6 4.7156 -3.1730 3.6767 11 7 4.5900 -2.6784 5.0500 12 6 5.5398 -2.9697 5.9607 13 8 6.4983 -3.6417 5.6435 14 6 5.4110 -2.4604 7.3732 15 16 6.8319 -3.0160 8.3470 16 6 6.4326 -2.3002 9.9067 17 1 5.5295 -1.7186 10.0186 18 6 7.2820 -2.4787 10.9899 19 7 8.3853 -3.1830 10.8522 20 14 6.8590 -1.7192 12.6434 21 1 6.0501 -2.6793 13.4366 22 1 8.1105 -1.4020 13.3770 23 1 6.0802 -0.4729 12.4310 24 6 4.3464 -4.6476 3.5560 25 6 2.7791 -4.5977 3.6160 26 6 2.3712 -3.1729 3.1326 27 6 3.6553 -2.5537 2.6951 28 1 3.8936 -3.0178 1.7381 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.8574 0.4353 1.2584 35 1 4.0032 -1.1573 0.4770 36 1 5.8841 -0.5028 3.4079 37 1 5.9506 -0.8991 1.6671 38 1 6.8244 -2.6532 3.6609 39 1 6.1869 -3.2192 2.0798 40 1 3.8233 -2.1412 5.3038 41 1 4.4934 -2.8473 7.8166 42 1 5.3792 -1.3710 7.3651 43 1 8.9791 -3.3074 11.6091 44 1 4.6719 -5.0511 2.5971 45 1 4.7670 -5.2212 4.3817 46 1 2.4467 -4.7560 4.6420 47 1 2.3490 -5.3546 2.9601 48 1 1.9324 -2.6032 3.9518 49 1 1.6749 -3.2386 2.2965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278431673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:45 Heat of formation + Delta-G solvation = -100.339605 kcal Electronic energy + Delta-G solvation = -28787.281632 eV Core-core repulsion = 24788.804836 eV Total energy + Delta-G solvation = -3998.476796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.57008 -42.34828 -39.85561 -37.01945 -35.13411 -34.58394 -34.35042 -32.50354 -30.49343 -29.61128 -28.15308 -27.74746 -27.51698 -24.10625 -22.73963 -22.33610 -22.02175 -20.69018 -20.37432 -19.76851 -17.87071 -17.57890 -17.53401 -16.87211 -16.81665 -16.55035 -16.50057 -16.10965 -15.85096 -15.66814 -15.56031 -14.93931 -14.54478 -14.38227 -14.23817 -14.20012 -13.84222 -13.60847 -13.41151 -13.31728 -13.15552 -13.04455 -12.93260 -12.87833 -12.77821 -12.57460 -12.38444 -12.15851 -12.03318 -11.81940 -11.71928 -11.57707 -11.51648 -11.47400 -11.16094 -11.13525 -10.67239 -10.25536 -10.01697 -9.34544 -8.64448 -8.33832 -6.11097 1.28011 1.42582 1.47622 1.58199 1.70163 2.24132 2.29640 2.59573 3.00138 3.03861 3.34267 3.54322 3.66270 3.80278 3.83477 3.86908 3.95004 4.03682 4.10133 4.16638 4.21057 4.30214 4.32281 4.37564 4.43468 4.46709 4.53432 4.58273 4.61252 4.71844 4.72576 4.77489 4.84446 4.88927 4.95475 5.00146 5.08394 5.14500 5.19936 5.24919 5.28082 5.34202 5.35686 5.42573 5.67032 5.81421 6.17837 6.20590 6.61034 7.07507 7.34374 8.75223 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.002271 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.087638 B =12328.045173 C =12724.213496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.083 3.917 3 H 0.095 0.905 4 F -0.235 7.235 5 C -0.142 4.142 6 C 0.049 3.951 7 N -0.507 5.507 8 C 0.052 3.948 9 C -0.143 4.143 10 C 0.152 3.848 11 N -0.684 5.684 12 C 0.539 3.461 13 O -0.558 6.558 14 C -0.128 4.128 15 S -0.146 6.146 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.258 1.258 24 C -0.125 4.125 25 C -0.112 4.112 26 C -0.094 4.094 27 C 0.072 3.928 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.413 0.587 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.271 0.729 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.405 6.347 -22.996 30.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.047 3.953 3 H 0.113 0.887 4 F -0.216 7.216 5 C -0.180 4.180 6 C -0.079 4.079 7 N -0.230 5.230 8 C -0.074 4.074 9 C -0.182 4.182 10 C 0.064 3.936 11 N -0.337 5.337 12 C 0.324 3.676 13 O -0.436 6.436 14 C -0.279 4.279 15 S 0.081 5.919 16 C -0.694 4.694 17 H 0.099 0.901 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.819 3.181 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.164 4.164 25 C -0.150 4.150 26 C -0.132 4.132 27 C -0.039 4.039 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.250 0.750 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.889 5.481 -23.111 29.735 hybrid contribution -0.439 0.596 0.793 1.084 sum -18.327 6.076 -22.319 29.511 Atomic orbital electron populations 1.22354 0.93012 1.03769 1.04313 1.21770 0.95857 0.96620 0.81085 0.88706 1.92785 1.90637 1.83874 1.54312 1.22296 0.94796 1.02507 0.98360 1.22377 0.95808 1.00646 0.89025 1.62500 1.08648 1.17214 1.34672 1.23532 0.86422 0.95906 1.01569 1.22746 0.98211 0.96869 1.00411 1.21597 0.96086 0.94337 0.81539 1.45283 1.24980 1.54845 1.08579 1.19932 0.82184 0.79192 0.86252 1.90671 1.32753 1.39634 1.80583 1.23356 1.04237 1.04985 0.95371 1.85523 1.28706 1.70890 1.06815 1.23203 1.11645 1.38425 0.96098 0.90078 1.26121 0.94136 0.95448 1.03487 1.70179 1.12473 1.39106 1.33012 0.84966 0.77970 0.78799 0.76321 1.19279 1.20311 1.18230 1.22500 0.97437 0.94457 1.02025 1.22960 0.93005 0.96943 1.02080 1.21387 0.94831 0.94697 1.02259 1.21615 0.96379 0.88772 0.97131 0.95206 0.89074 0.91348 0.91621 0.90474 0.88082 0.89712 0.95005 0.90912 0.91117 0.91996 0.89706 0.75008 0.87644 0.87791 0.92032 0.89866 0.93188 0.91531 0.89674 0.90149 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.65 71.98 0.69 -0.55 16 2 C 0.08 0.83 3.96 30.59 0.12 0.95 16 3 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 4 F -0.23 -3.90 16.86 44.97 0.76 -3.14 16 5 C -0.14 -1.46 4.47 30.59 0.14 -1.33 16 6 C 0.05 0.68 4.52 86.30 0.39 1.07 16 7 N -0.51 -8.77 5.29 -866.21 -4.59 -13.35 16 8 C 0.05 1.08 6.85 86.82 0.59 1.68 16 9 C -0.14 -3.62 5.95 31.58 0.19 -3.43 16 10 C 0.15 3.56 0.31 4.82 0.00 3.57 16 11 N -0.68 -18.08 4.81 -417.40 -2.01 -20.08 16 12 C 0.54 19.95 7.40 87.66 0.65 20.59 16 13 O -0.56 -25.44 14.00 -3.04 -0.04 -25.48 16 14 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 15 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 16 C -0.55 -31.39 9.50 67.95 0.65 -30.75 16 17 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 18 C 0.01 0.73 5.49 84.86 0.47 1.20 16 19 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 20 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 C -0.13 -2.84 6.15 31.80 0.20 -2.65 16 25 C -0.11 -1.79 6.86 32.97 0.23 -1.56 16 26 C -0.09 -1.24 5.62 30.36 0.17 -1.07 16 27 C 0.07 1.22 1.33 46.00 0.06 1.28 16 28 H 0.03 0.54 7.18 -2.39 -0.02 0.52 16 29 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.83 5.47 -2.39 -0.01 0.82 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.03 0.51 7.89 -2.39 -0.02 0.49 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.26 7.63 -2.38 -0.02 1.24 16 38 H 0.06 2.05 6.41 -2.39 -0.02 2.03 16 39 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.41 8.92 8.40 -92.71 -0.78 8.14 16 41 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 42 H 0.10 3.85 8.14 -2.40 -0.02 3.83 16 43 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.05 1.47 7.80 -2.39 -0.02 1.45 16 46 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 1.00 8.04 -2.39 -0.02 0.98 16 49 H 0.09 0.89 6.55 -2.38 -0.02 0.87 16 Total: -1.00 -74.72 397.16 0.41 -74.31 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.16 Total: 22.95 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.98 Total: -15.72 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -6.31 Total: -89.44 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.04 Total: -25.48 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.76 Total: -3.14 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -74.72 0.41 -74.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278431673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.032 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds