Wall clock time and date at job start Wed Apr 1 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46531 * 2 1 4 4 F 1.39904 * 109.47546 * 240.00216 * 2 1 3 5 5 C 1.53000 * 109.47541 * 119.99789 * 2 1 3 6 6 C 1.52996 * 109.47561 * 185.00691 * 5 2 1 7 7 N 1.46897 * 109.47353 * 180.02562 * 6 5 2 8 8 C 1.48908 * 110.99627 * 290.12087 * 7 6 5 9 9 C 1.55186 * 102.62404 * 199.07381 * 8 7 6 10 10 C 1.55048 * 102.62930 * 38.35309 * 9 8 7 11 11 H 1.09003 * 108.27790 * 93.97159 * 10 9 8 12 12 C 1.48188 * 110.99962 * 173.82782 * 7 6 5 13 13 H 1.08998 * 107.85923 * 31.11456 * 12 7 6 14 14 C 1.51105 * 110.37831 * 273.27840 * 12 7 6 15 15 C 1.52757 * 111.46940 * 275.03992 * 14 12 7 16 16 C 1.53236 * 107.77941 * 294.94702 * 15 14 12 17 17 N 1.41836 * 109.79485 * 210.30382 * 10 9 8 18 18 C 1.34773 * 117.52767 * 298.94234 * 17 10 9 19 19 O 1.21283 * 120.00163 * 359.46264 * 18 17 10 20 20 C 1.50709 * 119.99866 * 179.47021 * 18 17 10 21 21 S 1.81002 * 109.46920 * 179.97438 * 20 18 17 22 22 C 1.76202 * 99.99828 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99664 * 0.02562 * 22 21 20 24 24 C 1.38797 * 119.99957 * 180.02562 * 22 21 20 25 25 N 1.31631 * 119.99907 * 180.02562 * 24 22 21 26 26 Si 1.86793 * 120.00081 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47553 * 90.00553 * 26 24 22 28 28 H 1.48500 * 109.47190 * 210.00357 * 26 24 22 29 29 H 1.48510 * 109.47212 * 330.00133 * 26 24 22 30 30 H 1.09001 * 109.47371 * 299.99530 * 1 2 3 31 31 H 1.08995 * 109.46999 * 60.00376 * 1 2 3 32 32 H 1.09008 * 109.46531 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47102 * 65.00320 * 5 2 1 34 34 H 1.09007 * 109.46905 * 305.00342 * 5 2 1 35 35 H 1.09001 * 109.47249 * 59.99314 * 6 5 2 36 36 H 1.09007 * 109.46726 * 299.99760 * 6 5 2 37 37 H 1.08998 * 110.77422 * 80.79373 * 8 7 6 38 38 H 1.08990 * 110.94267 * 317.43267 * 8 7 6 39 39 H 1.09002 * 110.80983 * 156.69359 * 9 8 7 40 40 H 1.08998 * 110.81326 * 280.01938 * 9 8 7 41 41 H 1.08999 * 109.07649 * 35.54916 * 14 12 7 42 42 H 1.08999 * 109.07700 * 154.52402 * 14 12 7 43 43 H 1.09001 * 109.79637 * 54.51768 * 15 14 12 44 44 H 1.08995 * 109.79620 * 175.31958 * 15 14 12 45 45 H 1.08992 * 109.56091 * 177.55880 * 16 15 14 46 46 H 1.09004 * 109.55994 * 297.78029 * 16 15 14 47 47 H 1.08991 * 109.46962 * 299.99518 * 20 18 17 48 48 H 1.08998 * 109.47075 * 59.99492 * 20 18 17 49 49 H 0.96994 * 120.00034 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 9 1.9965 -0.6595 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5649 -0.6131 1.3138 7 7 4.0546 -1.3060 2.5129 8 6 3.6760 -0.5664 3.7486 9 6 4.6629 -1.1373 4.8014 10 6 5.9745 -1.2899 3.9887 11 1 6.5715 -0.3890 4.1309 12 6 5.5357 -1.3502 2.5330 13 1 5.9037 -0.4556 2.0306 14 6 6.0367 -2.5548 1.7706 15 6 6.0652 -3.8021 2.6520 16 6 7.0988 -3.5692 3.7590 17 7 6.7343 -2.3722 4.5018 18 6 7.1435 -2.2936 5.7835 19 8 6.8678 -1.3181 6.4494 20 6 7.9440 -3.4177 6.3892 21 16 8.3402 -3.0176 8.1094 22 6 9.2497 -4.4588 8.5570 23 1 9.4061 -5.2451 7.8333 24 6 9.7653 -4.5835 9.8396 25 7 10.4452 -5.6599 10.1739 26 14 9.4955 -3.2232 11.0910 27 1 8.2389 -3.4808 11.8391 28 1 10.6379 -3.1892 12.0393 29 1 9.3955 -1.9180 10.3896 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.7519 -1.7714 1.2056 34 1 1.6054 -0.2616 2.1370 35 1 3.8532 0.4372 1.3573 36 1 3.9996 -1.0726 0.4260 37 1 2.6448 -0.7828 4.0279 38 1 3.8237 0.5059 3.6215 39 1 4.7973 -0.4370 5.6258 40 1 4.3204 -2.1046 5.1689 41 1 5.3809 -2.7353 0.9189 42 1 7.0440 -2.3524 1.4067 43 1 5.0819 -3.9648 3.0933 44 1 6.3503 -4.6689 2.0559 45 1 7.1120 -4.4264 4.4321 46 1 8.0858 -3.4385 3.3151 47 1 7.3613 -4.3382 6.3548 48 1 8.8673 -3.5510 5.8255 49 1 10.8058 -5.7469 11.0701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279540664.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:22 Heat of formation + Delta-G solvation = -84.793184 kcal Electronic energy + Delta-G solvation = -28532.607194 eV Core-core repulsion = 24534.804542 eV Total energy + Delta-G solvation = -3997.802653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.00452 -41.09310 -38.73774 -36.41932 -34.65467 -33.34233 -32.43374 -31.80602 -29.72164 -29.24857 -27.82145 -25.62137 -24.86946 -23.87361 -22.53474 -22.09110 -21.21240 -20.25972 -18.49044 -17.81491 -17.08364 -16.90642 -16.34980 -15.91489 -15.77686 -15.61388 -15.12017 -15.03122 -14.96429 -14.66886 -14.21194 -14.03045 -13.83118 -13.50949 -13.26680 -13.24894 -12.93882 -12.78904 -12.67363 -12.54378 -12.41981 -12.17166 -11.76187 -11.69137 -11.34938 -11.27893 -11.24450 -11.14718 -11.11970 -11.00483 -10.96009 -10.81210 -10.62578 -10.58622 -9.85271 -9.41561 -8.99938 -8.84535 -8.49175 -8.43319 -6.91321 -6.28460 -4.00022 2.73345 2.92204 3.21433 3.33268 3.45499 3.50535 3.61370 4.10030 4.20966 4.25823 4.31566 4.33501 4.46428 4.51233 4.60783 4.71916 4.76639 4.77009 4.89435 4.94333 5.01753 5.07923 5.10679 5.11213 5.16393 5.19504 5.27610 5.34532 5.42872 5.50385 5.53088 5.54508 5.56899 5.66868 5.69671 5.76883 5.77742 5.81565 5.87885 5.99991 6.02813 6.12030 6.15381 6.57263 6.68883 6.85813 7.42331 7.94614 8.42134 8.46302 9.17789 10.80750 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.028703 B = 0.002140 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.272765 B =13080.888795 C =13675.367480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.080 0.920 4 F -0.215 7.215 5 C -0.141 4.141 6 C 0.044 3.956 7 N -0.507 5.507 8 C 0.031 3.969 9 C -0.130 4.130 10 C 0.155 3.845 11 H 0.068 0.932 12 C 0.075 3.925 13 H 0.051 0.949 14 C -0.105 4.105 15 C -0.124 4.124 16 C 0.105 3.895 17 N -0.597 5.597 18 C 0.525 3.475 19 O -0.514 6.514 20 C -0.120 4.120 21 S -0.144 6.144 22 C -0.520 4.520 23 H 0.088 0.912 24 C 0.095 3.905 25 N -0.880 5.880 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.275 1.275 29 H -0.236 1.236 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.049 10.027 -22.675 30.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.098 0.902 4 F -0.196 7.196 5 C -0.179 4.179 6 C -0.084 4.084 7 N -0.231 5.231 8 C -0.097 4.097 9 C -0.169 4.169 10 C 0.049 3.951 11 H 0.086 0.914 12 C -0.034 4.034 13 H 0.069 0.931 14 C -0.143 4.143 15 C -0.162 4.162 16 C -0.018 4.018 17 N -0.332 5.332 18 C 0.313 3.687 19 O -0.389 6.389 20 C -0.271 4.271 21 S 0.083 5.917 22 C -0.668 4.668 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.517 5.517 26 Si 0.682 3.318 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.160 1.160 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.562 10.843 -21.650 29.912 hybrid contribution 0.721 -0.006 -0.231 0.757 sum -16.841 10.837 -21.881 29.662 Atomic orbital electron populations 1.22368 0.94192 1.03751 1.03418 1.21567 0.94899 0.96130 0.82256 0.90159 1.92823 1.90266 1.83389 1.53087 1.22157 0.95726 1.02795 0.97181 1.22279 0.95165 0.96740 0.94212 1.65099 1.08532 1.47713 1.01772 1.23381 1.00263 0.95878 0.90179 1.23124 0.93436 1.02699 0.97656 1.20120 0.92834 0.89767 0.92382 0.91398 1.21668 0.88478 0.98763 0.94493 0.93056 1.21026 1.00879 0.94075 0.98288 1.21703 1.00142 0.97712 0.96670 1.21594 0.98045 0.87392 0.94740 1.46409 1.54564 1.19713 1.12495 1.20361 0.79395 0.88153 0.80808 1.90672 1.55427 1.32672 1.60099 1.23331 1.02075 0.99443 1.02206 1.84769 1.70990 1.30148 1.05837 1.22309 1.38859 1.03836 1.01769 0.89390 1.24711 0.93456 0.95666 0.97496 1.69937 1.34355 1.26823 1.20563 0.86734 0.78719 0.84183 0.82197 1.19231 1.19981 1.15952 0.90648 0.91463 0.91258 0.89700 0.90068 0.94489 0.90193 0.89766 0.93453 0.89501 0.90481 0.90922 0.91615 0.90368 0.90366 0.89763 0.91728 0.88476 0.88527 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 9.65 37.16 0.36 -0.47 16 2 C 0.09 0.52 3.96 -26.73 -0.11 0.42 16 3 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 4 F -0.21 -1.88 16.76 2.25 0.04 -1.84 16 5 C -0.14 -0.88 5.04 -26.73 -0.13 -1.02 16 6 C 0.04 0.33 4.50 -3.83 -0.02 0.32 16 7 N -0.51 -4.62 4.94 -224.12 -1.11 -5.72 16 8 C 0.03 0.29 5.83 -1.55 -0.01 0.28 16 9 C -0.13 -1.61 5.52 -24.49 -0.14 -1.75 16 10 C 0.16 1.93 2.70 -69.71 -0.19 1.74 16 11 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 12 C 0.07 0.73 2.45 -68.38 -0.17 0.56 16 13 H 0.05 0.48 7.74 -51.93 -0.40 0.08 16 14 C -0.10 -0.91 5.46 -27.81 -0.15 -1.06 16 15 C -0.12 -1.14 6.09 -26.73 -0.16 -1.30 16 16 C 0.11 1.16 5.72 -4.45 -0.03 1.14 16 17 N -0.60 -8.24 2.87 -169.26 -0.49 -8.73 16 18 C 0.53 9.42 7.23 -10.98 -0.08 9.34 16 19 O -0.51 -10.82 14.15 5.56 0.08 -10.74 16 20 C -0.12 -2.33 4.64 36.01 0.17 -2.17 16 21 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 22 C -0.52 -14.94 10.04 30.94 0.31 -14.62 16 23 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 24 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 25 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 26 Si 0.86 21.78 27.74 -169.99 -4.71 17.07 16 27 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.45 7.23 -51.93 -0.38 0.08 16 35 H 0.04 0.26 7.92 -51.93 -0.41 -0.15 16 36 H 0.08 0.64 7.27 -51.93 -0.38 0.26 16 37 H 0.08 0.71 7.72 -51.93 -0.40 0.31 16 38 H 0.05 0.41 7.90 -51.93 -0.41 0.00 16 39 H 0.09 1.23 7.41 -51.93 -0.38 0.84 16 40 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 41 H 0.07 0.60 7.38 -51.93 -0.38 0.22 16 42 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.95 6.23 -51.93 -0.32 0.62 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 1.77 7.22 -51.92 -0.38 1.39 16 48 H 0.10 1.76 8.03 -51.92 -0.42 1.35 16 49 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -32.84 391.98 -10.42 -43.25 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.48 Total: -1.93 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -0.44 Total: -5.91 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: -0.82 Total: -40.18 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.84 -10.42 -43.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279540664.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.541 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds