Wall clock time and date at job start Wed Apr 1 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46763 * 2 1 4 4 F 1.39897 * 109.47560 * 240.00302 * 2 1 3 5 5 C 1.53000 * 109.47338 * 119.99925 * 2 1 3 6 6 C 1.53000 * 109.47009 * 185.00342 * 5 2 1 7 7 N 1.46904 * 109.46897 * 180.02562 * 6 5 2 8 8 C 1.47543 * 110.99884 * 290.55103 * 7 6 5 9 9 C 1.54558 * 107.21350 * 235.39817 * 8 7 6 10 10 C 1.54402 * 102.53177 * 338.22754 * 9 8 7 11 11 H 1.09000 * 109.99505 * 279.85863 * 10 9 8 12 12 C 1.48618 * 111.00175 * 170.00049 * 7 6 5 13 13 H 1.09008 * 111.52900 * 268.17036 * 12 7 6 14 14 C 1.53013 * 107.12799 * 31.18252 * 12 7 6 15 15 C 1.52763 * 110.81231 * 168.05792 * 14 12 7 16 16 C 1.53463 * 108.44187 * 296.26742 * 15 14 12 17 17 N 1.45124 * 111.60408 * 156.73569 * 10 9 8 18 18 C 1.34781 * 119.58165 * 111.31302 * 17 10 9 19 19 O 1.21283 * 119.99958 * 0.02562 * 18 17 10 20 20 C 1.50701 * 120.00091 * 179.97438 * 18 17 10 21 21 S 1.81002 * 109.47146 * 179.97438 * 20 18 17 22 22 C 1.76199 * 100.00175 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99804 * 0.02562 * 22 21 20 24 24 C 1.38791 * 120.00104 * 180.02562 * 22 21 20 25 25 N 1.31631 * 120.00139 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00123 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46930 * 89.99975 * 26 24 22 28 28 H 1.48492 * 109.47439 * 210.00021 * 26 24 22 29 29 H 1.48501 * 109.47225 * 330.00504 * 26 24 22 30 30 H 1.08999 * 109.47000 * 299.99604 * 1 2 3 31 31 H 1.08992 * 109.47213 * 60.00134 * 1 2 3 32 32 H 1.09005 * 109.46763 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46863 * 65.00092 * 5 2 1 34 34 H 1.09001 * 109.46875 * 304.99829 * 5 2 1 35 35 H 1.08993 * 109.47513 * 60.00147 * 6 5 2 36 36 H 1.09001 * 109.46883 * 299.99481 * 6 5 2 37 37 H 1.08999 * 109.89312 * 115.99933 * 8 7 6 38 38 H 1.08998 * 109.88797 * 354.79600 * 8 7 6 39 39 H 1.08999 * 110.79607 * 219.96671 * 9 8 7 40 40 H 1.09002 * 110.80004 * 96.48895 * 9 8 7 41 41 H 1.09005 * 109.21231 * 288.41456 * 14 12 7 42 42 H 1.09003 * 109.21352 * 47.73690 * 14 12 7 43 43 H 1.08994 * 109.65360 * 176.57370 * 15 14 12 44 44 H 1.08999 * 109.80911 * 56.04481 * 15 14 12 45 45 H 1.09002 * 109.83076 * 298.52879 * 16 15 14 46 46 H 1.09003 * 109.83472 * 177.58080 * 16 15 14 47 47 H 1.08988 * 109.47316 * 300.00361 * 20 18 17 48 48 H 1.09006 * 109.47017 * 60.00530 * 20 18 17 49 49 H 0.96999 * 120.00249 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5649 -0.6131 1.3136 7 7 4.0547 -1.3062 2.5128 8 6 3.6707 -0.5788 3.7377 9 6 4.9684 -0.2988 4.5291 10 6 5.9354 -1.3680 3.9761 11 1 5.7429 -2.3280 4.4549 12 6 5.5353 -1.4315 2.4881 13 1 5.8499 -2.3694 2.0303 14 6 6.0782 -0.2138 1.7373 15 6 7.5914 -0.0984 1.9123 16 6 7.8911 0.1439 3.3978 17 7 7.3218 -0.9779 4.1543 18 6 8.0965 -1.6539 5.0257 19 8 7.6340 -2.5821 5.6547 20 6 9.5376 -1.2573 5.2178 21 16 10.3047 -2.3457 6.4438 22 6 11.9342 -1.6759 6.4706 23 1 12.1835 -0.8365 5.8383 24 6 12.8974 -2.2269 7.3043 25 7 12.5937 -3.2502 8.0745 26 14 14.6252 -1.5173 7.3322 27 1 14.7045 -0.4478 8.3595 28 1 15.5964 -2.5916 7.6601 29 1 14.9481 -0.9480 5.9992 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -1.7714 1.2056 34 1 1.6055 -0.2617 2.1369 35 1 3.8532 0.4371 1.3573 36 1 3.9995 -1.0727 0.4259 37 1 2.9960 -1.1907 4.3363 38 1 3.1869 0.3617 3.4742 39 1 4.8075 -0.4384 5.5981 40 1 5.3403 0.7043 4.3205 41 1 5.8463 -0.3136 0.6769 42 1 5.6030 0.6876 2.1244 43 1 7.9660 0.7376 1.3218 44 1 8.0723 -1.0210 1.5874 45 1 7.4317 1.0784 3.7201 46 1 8.9688 0.1873 3.5553 47 1 10.0683 -1.3461 4.2700 48 1 9.5872 -0.2258 5.5667 49 1 13.2670 -3.6356 8.6569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279540669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:25 Heat of formation + Delta-G solvation = -105.532435 kcal Electronic energy + Delta-G solvation = -28475.002830 eV Core-core repulsion = 24476.300855 eV Total energy + Delta-G solvation = -3998.701974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.54967 -42.05473 -40.02580 -37.26092 -35.20445 -34.59054 -33.98572 -32.48445 -30.75518 -30.14918 -28.61384 -27.66246 -26.04255 -24.52350 -23.62260 -22.43291 -21.97175 -20.84536 -19.96250 -19.34454 -18.39348 -17.63340 -17.34114 -16.88871 -16.81185 -16.73167 -16.47782 -16.05312 -15.90601 -15.38362 -15.15568 -15.02984 -14.79901 -14.64538 -14.41210 -14.26493 -14.03958 -13.63027 -13.44785 -13.34244 -13.16317 -13.06438 -12.89896 -12.87614 -12.82447 -12.60859 -12.55299 -12.44334 -12.06816 -11.94291 -11.73021 -11.61071 -11.55500 -11.51647 -11.32282 -11.14620 -10.89115 -10.26575 -9.67805 -9.27145 -8.68341 -8.34813 -6.13590 1.23766 1.42419 1.44751 1.51596 1.55760 2.00571 2.26710 2.86972 2.99342 3.21788 3.42303 3.53979 3.71717 3.78995 3.84920 3.88809 3.90692 3.94331 3.99698 4.06261 4.10610 4.22626 4.24316 4.36335 4.40551 4.43754 4.48767 4.48895 4.54369 4.63831 4.66212 4.81709 4.84774 4.90994 4.91844 4.99801 5.02740 5.07206 5.17623 5.18574 5.24246 5.31571 5.36169 5.41326 5.55260 5.91136 6.09631 6.19253 6.23672 7.06225 7.10889 8.74420 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.033292 B = 0.002006 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.845358 B =13952.777515 C =14387.917173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.084 3.916 3 H 0.099 0.901 4 F -0.234 7.234 5 C -0.138 4.138 6 C 0.051 3.949 7 N -0.537 5.537 8 C 0.050 3.950 9 C -0.144 4.144 10 C 0.134 3.866 11 H 0.073 0.927 12 C 0.074 3.926 13 H 0.082 0.918 14 C -0.134 4.134 15 C -0.128 4.128 16 C 0.096 3.904 17 N -0.591 5.591 18 C 0.530 3.470 19 O -0.566 6.566 20 C -0.122 4.122 21 S -0.154 6.154 22 C -0.545 4.545 23 H 0.084 0.916 24 C 0.013 3.987 25 N -0.912 5.912 26 Si 0.999 3.001 27 H -0.267 1.267 28 H -0.279 1.279 29 H -0.257 1.257 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.991 14.783 -18.491 32.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.048 3.952 3 H 0.117 0.883 4 F -0.215 7.215 5 C -0.176 4.176 6 C -0.077 4.077 7 N -0.260 5.260 8 C -0.078 4.078 9 C -0.184 4.184 10 C 0.029 3.971 11 H 0.091 0.909 12 C -0.035 4.035 13 H 0.100 0.900 14 C -0.172 4.172 15 C -0.166 4.166 16 C -0.025 4.025 17 N -0.324 5.324 18 C 0.318 3.682 19 O -0.444 6.444 20 C -0.273 4.273 21 S 0.074 5.926 22 C -0.693 4.693 23 H 0.102 0.898 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.821 3.179 27 H -0.193 1.193 28 H -0.204 1.204 29 H -0.181 1.181 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.123 0.877 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.878 12.791 -17.490 31.511 hybrid contribution 1.949 1.361 -0.276 2.393 sum -20.929 14.152 -17.766 30.886 Atomic orbital electron populations 1.22367 0.93288 1.03572 1.04354 1.21770 0.95675 0.96644 0.81137 0.88319 1.92788 1.90585 1.83918 1.54253 1.22177 0.95315 1.02107 0.98009 1.22324 0.95183 0.97516 0.92642 1.63811 1.09744 1.49706 1.02784 1.22847 0.96109 0.98169 0.90690 1.22986 0.95554 0.99264 1.00569 1.21440 0.80370 0.99041 0.96268 0.90893 1.22793 0.87590 0.99047 0.94079 0.90041 1.22106 0.96080 0.97768 1.01286 1.21875 0.96247 1.03551 0.94962 1.22193 1.00155 0.88466 0.91710 1.47476 1.10381 1.33375 1.41183 1.20255 0.87545 0.81546 0.78824 1.90679 1.75037 1.30629 1.48035 1.23370 0.94904 1.04664 1.04345 1.85636 1.10225 1.44813 1.51969 1.23189 0.96110 1.20526 1.29436 0.89790 1.26142 1.04161 0.94996 0.93889 1.70189 1.36379 1.23532 1.24695 0.84944 0.75762 0.77893 0.79322 1.19266 1.20380 1.18072 0.89020 0.91205 0.92045 0.91368 0.88675 0.92432 0.91218 0.90435 0.90002 0.91475 0.89585 0.90008 0.90330 0.87662 0.92209 0.89129 0.88844 0.87376 0.87272 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.65 71.98 0.69 -0.58 16 2 C 0.08 0.81 3.96 30.60 0.12 0.93 16 3 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 4 F -0.23 -3.92 16.76 44.97 0.75 -3.17 16 5 C -0.14 -1.46 5.01 30.59 0.15 -1.31 16 6 C 0.05 0.65 3.31 86.30 0.29 0.94 16 7 N -0.54 -9.26 5.15 -859.27 -4.43 -13.69 16 8 C 0.05 0.75 5.99 86.71 0.52 1.27 16 9 C -0.14 -2.79 6.07 31.60 0.19 -2.60 16 10 C 0.13 3.41 3.07 46.13 0.14 3.55 16 11 H 0.07 2.44 7.00 -2.39 -0.02 2.43 16 12 C 0.07 1.47 3.70 45.00 0.17 1.64 16 13 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 14 C -0.13 -1.87 3.61 30.52 0.11 -1.76 16 15 C -0.13 -1.88 6.11 30.67 0.19 -1.69 16 16 C 0.10 1.80 6.05 86.48 0.52 2.33 16 17 N -0.59 -16.30 2.73 -794.41 -2.17 -18.47 16 18 C 0.53 20.54 7.67 87.66 0.67 21.21 16 19 O -0.57 -27.40 15.21 -3.04 -0.05 -27.44 16 20 C -0.12 -4.91 4.47 71.24 0.32 -4.59 16 21 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 22 C -0.54 -31.10 9.50 67.95 0.65 -30.46 16 23 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 24 C 0.01 0.73 5.49 84.86 0.47 1.20 16 25 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 26 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 29 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 30 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.73 7.15 -2.39 -0.02 0.71 16 35 H 0.06 0.56 6.41 -2.39 -0.02 0.55 16 36 H 0.07 1.06 7.15 -2.39 -0.02 1.04 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 0.84 6.94 -2.39 -0.02 0.82 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.39 6.80 -2.39 -0.02 1.37 16 41 H 0.08 1.01 6.85 -2.38 -0.02 1.00 16 42 H 0.08 0.92 6.15 -2.39 -0.01 0.91 16 43 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 1.33 7.53 -2.39 -0.02 1.31 16 46 H 0.09 1.80 5.82 -2.39 -0.01 1.79 16 47 H 0.11 3.94 7.61 -2.40 -0.02 3.92 16 48 H 0.11 3.94 7.93 -2.39 -0.02 3.92 16 49 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.30 389.05 1.39 -75.91 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.93 Total: 17.05 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 5.20 Total: -9.91 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -6.31 Total: -88.14 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.75 Total: -3.17 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -77.30 1.39 -75.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279540669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.627 kcal (2) G-P(sol) polarization free energy of solvation -77.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds