Wall clock time and date at job start Wed Apr 1 2020 03:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46755 * 2 1 4 4 F 1.39907 * 109.46686 * 240.00428 * 2 1 3 5 5 C 1.52995 * 109.47199 * 120.00498 * 2 1 3 6 6 C 1.52999 * 109.47358 * 184.99896 * 5 2 1 7 7 N 1.46892 * 109.47435 * 179.97438 * 6 5 2 8 8 C 1.49260 * 111.00347 * 285.21152 * 7 6 5 9 9 C 1.55126 * 106.79244 * 214.72002 * 8 7 6 10 10 C 1.52733 * 103.97095 * 356.87811 * 9 8 7 11 11 H 1.08993 * 111.23816 * 271.21202 * 10 9 8 12 12 C 1.46342 * 111.00281 * 169.99933 * 7 6 5 13 13 H 1.09003 * 109.71173 * 47.17578 * 12 7 6 14 14 C 1.51322 * 118.14171 * 280.45412 * 12 7 6 15 15 C 1.53843 * 107.27549 * 179.39241 * 14 12 7 16 16 C 1.52713 * 111.61637 * 57.27296 * 15 14 12 17 17 N 1.45504 * 117.30583 * 142.97419 * 10 9 8 18 18 C 1.34781 * 122.24831 * 7.73125 * 17 10 9 19 19 O 1.21278 * 120.00075 * 355.50686 * 18 17 10 20 20 C 1.50698 * 119.99606 * 175.50396 * 18 17 10 21 21 S 1.81002 * 109.47136 * 179.97438 * 20 18 17 22 22 C 1.76204 * 99.99896 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00339 * 0.02562 * 22 21 20 24 24 C 1.38793 * 119.99681 * 180.02562 * 22 21 20 25 25 N 1.31633 * 120.00375 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99986 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47344 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.47094 * 299.99648 * 26 24 22 29 29 H 1.48496 * 109.47449 * 59.99412 * 26 24 22 30 30 H 1.09007 * 109.46724 * 300.00064 * 1 2 3 31 31 H 1.09004 * 109.47266 * 59.99359 * 1 2 3 32 32 H 1.08995 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47589 * 64.99407 * 5 2 1 34 34 H 1.09008 * 109.46977 * 304.99543 * 5 2 1 35 35 H 1.09001 * 109.47170 * 59.99254 * 6 5 2 36 36 H 1.08995 * 109.46936 * 300.00040 * 6 5 2 37 37 H 1.09001 * 109.99168 * 334.05174 * 8 7 6 38 38 H 1.09006 * 109.99162 * 95.33936 * 8 7 6 39 39 H 1.08999 * 110.55079 * 115.67068 * 9 8 7 40 40 H 1.09003 * 110.54552 * 238.48813 * 9 8 7 41 41 H 1.09001 * 109.89902 * 59.95347 * 14 12 7 42 42 H 1.08998 * 109.89448 * 298.83267 * 14 12 7 43 43 H 1.09004 * 109.05161 * 296.73106 * 15 14 12 44 44 H 1.08997 * 108.99609 * 177.78820 * 15 14 12 45 45 H 1.09001 * 109.16761 * 191.21707 * 16 15 14 46 46 H 1.09007 * 109.12407 * 71.98636 * 16 15 14 47 47 H 1.09010 * 109.46991 * 60.00127 * 20 18 17 48 48 H 1.09001 * 109.47507 * 300.00251 * 20 18 17 49 49 H 0.97000 * 120.00015 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0400 -0.7213 1.2491 6 6 3.5649 -0.6134 1.3136 7 7 4.0545 -1.3054 2.5132 8 6 3.7790 -0.5050 3.7425 9 6 4.9670 -0.7466 4.7103 10 6 5.8377 -1.7656 3.9780 11 1 5.5351 -2.7857 4.2141 12 6 5.5125 -1.4290 2.4891 13 1 5.9584 -0.4703 2.2241 14 6 6.1219 -2.5263 1.6439 15 6 7.6497 -2.4188 1.7879 16 6 8.0857 -2.5210 3.2479 17 7 7.2803 -1.6253 4.1061 18 6 7.8446 -0.7424 4.9538 19 8 7.1473 0.0253 5.5825 20 6 9.3420 -0.7093 5.1204 21 16 9.7877 0.5736 6.3170 22 6 11.5408 0.3966 6.3166 23 1 12.0084 -0.3471 5.6883 24 6 12.3209 1.2129 7.1237 25 7 11.7511 2.1197 7.8892 26 14 14.1794 1.0258 7.1228 27 1 14.7763 2.0076 8.0637 28 1 14.5386 -0.3502 7.5505 29 1 14.7010 1.2707 5.7542 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7716 1.2055 34 1 1.6054 -0.2618 2.1370 35 1 3.8533 0.4368 1.3572 36 1 3.9994 -1.0728 0.4259 37 1 3.7126 0.5535 3.4909 38 1 2.8486 -0.8375 4.2030 39 1 5.5173 0.1789 4.8792 40 1 4.6130 -1.1603 5.6547 41 1 5.8374 -2.3920 0.6002 42 1 5.7834 -3.4996 1.9992 43 1 7.9786 -1.4610 1.3847 44 1 8.1171 -3.2232 1.2199 45 1 9.1368 -2.2435 3.3278 46 1 7.9604 -3.5494 3.5869 47 1 9.8096 -0.4887 4.1607 48 1 9.6892 -1.6781 5.4796 49 1 12.2963 2.6899 8.4535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279540681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:35 Heat of formation + Delta-G solvation = -79.177595 kcal Electronic energy + Delta-G solvation = -28500.263302 eV Core-core repulsion = 24502.704159 eV Total energy + Delta-G solvation = -3997.559142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.92445 -40.85092 -38.47075 -36.45635 -34.61204 -32.98307 -32.44320 -31.72556 -29.39205 -29.09569 -27.81184 -25.53881 -24.85675 -23.70660 -22.07706 -21.91924 -21.21115 -20.30339 -19.00896 -17.54146 -17.00293 -16.41109 -16.24294 -15.92276 -15.59750 -15.42857 -15.10136 -14.87334 -14.81962 -14.48836 -14.32205 -14.01882 -13.69843 -13.60687 -13.22564 -13.13584 -12.81620 -12.65510 -12.61614 -12.44674 -12.17545 -12.00904 -11.91832 -11.61566 -11.34941 -11.11244 -11.08389 -11.05377 -11.04915 -11.01657 -10.89848 -10.84928 -10.75749 -10.60374 -9.83062 -9.07532 -8.94609 -8.66171 -8.42747 -8.25425 -6.51896 -6.23183 -3.93924 2.85135 2.99114 3.22137 3.23089 3.27500 3.49191 3.67752 4.16780 4.18829 4.30844 4.35691 4.43000 4.54810 4.61340 4.71389 4.81193 4.91357 4.97119 4.98016 5.09018 5.11914 5.14625 5.17760 5.20867 5.26337 5.30201 5.33849 5.46740 5.50610 5.57743 5.59649 5.66613 5.69242 5.76328 5.77769 5.80771 5.84887 5.85867 5.92904 6.09681 6.10476 6.18244 6.29981 6.49763 6.83826 6.94297 7.57145 7.59393 8.33277 8.55673 9.22030 10.84127 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.002155 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.659191 B =12987.210469 C =13417.049161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 H 0.081 0.919 4 F -0.215 7.215 5 C -0.139 4.139 6 C 0.044 3.956 7 N -0.504 5.504 8 C 0.034 3.966 9 C -0.146 4.146 10 C 0.147 3.853 11 H 0.082 0.918 12 C 0.045 3.955 13 H 0.052 0.948 14 C -0.099 4.099 15 C -0.133 4.133 16 C 0.110 3.890 17 N -0.613 5.613 18 C 0.542 3.458 19 O -0.511 6.511 20 C -0.152 4.152 21 S -0.060 6.060 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.283 1.283 28 H -0.274 1.274 29 H -0.274 1.274 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.667 -9.101 -15.916 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.050 3.950 3 H 0.099 0.901 4 F -0.196 7.196 5 C -0.177 4.177 6 C -0.084 4.084 7 N -0.228 5.228 8 C -0.094 4.094 9 C -0.183 4.183 10 C 0.042 3.958 11 H 0.100 0.900 12 C -0.065 4.065 13 H 0.070 0.930 14 C -0.137 4.137 15 C -0.172 4.172 16 C -0.013 4.013 17 N -0.349 5.349 18 C 0.331 3.669 19 O -0.386 6.386 20 C -0.303 4.303 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.208 1.208 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.141 0.859 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.905 -8.324 -14.840 26.186 hybrid contribution 2.410 -0.305 -0.944 2.606 sum -17.495 -8.629 -15.784 25.093 Atomic orbital electron populations 1.22364 0.94233 1.03647 1.03413 1.21579 0.94851 0.96239 0.82288 0.90110 1.92818 1.90292 1.83397 1.53109 1.22140 0.95882 1.02584 0.97094 1.22278 0.95069 0.96989 0.94077 1.64580 1.11187 1.44923 1.02072 1.23456 0.99404 0.95927 0.90580 1.22913 0.95020 1.02923 0.97491 1.21640 0.80393 0.99669 0.94084 0.89992 1.22721 0.88161 0.98588 0.97070 0.93021 1.21245 0.94208 0.98666 0.99623 1.21927 0.95880 1.03087 0.96269 1.21719 0.96108 0.93948 0.89560 1.47896 1.05831 1.39509 1.41674 1.20284 0.90146 0.78785 0.77686 1.90548 1.62923 1.39304 1.45793 1.23587 0.93785 1.06804 1.06080 1.85364 1.06247 1.41202 1.50504 1.22816 0.91381 1.23862 1.30338 0.91008 1.24987 0.99537 0.94478 0.94556 1.70006 1.36105 1.19648 1.24516 0.86231 0.83007 0.78154 0.78151 1.20802 1.19928 1.19941 0.90646 0.91488 0.91327 0.89837 0.90101 0.94347 0.90376 0.93318 0.90325 0.85944 0.90811 0.91666 0.90857 0.91497 0.90145 0.89227 0.91415 0.89396 0.89247 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 9.65 37.16 0.36 -0.61 16 2 C 0.09 0.61 3.96 -26.73 -0.11 0.51 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 F -0.22 -2.10 16.76 2.25 0.04 -2.07 16 5 C -0.14 -1.04 5.10 -26.73 -0.14 -1.17 16 6 C 0.04 0.41 4.70 -3.83 -0.02 0.39 16 7 N -0.50 -5.30 5.20 -222.71 -1.16 -6.46 16 8 C 0.03 0.37 6.09 -1.39 -0.01 0.36 16 9 C -0.15 -1.99 5.66 -25.74 -0.15 -2.13 16 10 C 0.15 1.90 3.25 -66.96 -0.22 1.68 16 11 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 12 C 0.04 0.50 1.66 -67.22 -0.11 0.39 16 13 H 0.05 0.69 8.00 -51.93 -0.42 0.27 16 14 C -0.10 -0.93 5.87 -27.14 -0.16 -1.09 16 15 C -0.13 -1.19 5.94 -26.44 -0.16 -1.35 16 16 C 0.11 1.18 6.31 -3.42 -0.02 1.16 16 17 N -0.61 -8.73 2.91 -164.16 -0.48 -9.21 16 18 C 0.54 10.08 7.74 -10.98 -0.09 9.99 16 19 O -0.51 -11.02 12.46 5.56 0.07 -10.95 16 20 C -0.15 -3.05 4.63 36.00 0.17 -2.88 16 21 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 22 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 23 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 26 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.54 7.70 -51.92 -0.40 0.14 16 35 H 0.04 0.37 7.69 -51.93 -0.40 -0.03 16 36 H 0.08 0.75 7.34 -51.93 -0.38 0.37 16 37 H 0.05 0.53 7.52 -51.93 -0.39 0.14 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.12 2.08 5.22 -52.12 -0.27 1.81 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.57 7.68 -51.93 -0.40 0.18 16 42 H 0.07 0.66 8.05 -51.93 -0.42 0.25 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.97 6.20 -51.93 -0.32 0.65 16 46 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 47 H 0.09 1.64 7.59 -51.91 -0.39 1.24 16 48 H 0.09 1.67 8.13 -51.92 -0.42 1.25 16 49 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -32.70 394.27 -10.94 -43.64 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.40 Total: -0.49 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -0.44 Total: -7.57 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.90 Total: -40.93 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.70 -10.94 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279540681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.541 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds