Wall clock time and date at job start Wed Apr 1 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46755 * 2 1 4 4 F 1.39907 * 109.46686 * 240.00428 * 2 1 3 5 5 C 1.52995 * 109.47199 * 120.00498 * 2 1 3 6 6 C 1.52999 * 109.47358 * 184.99896 * 5 2 1 7 7 N 1.46892 * 109.47435 * 179.97438 * 6 5 2 8 8 C 1.49260 * 111.00347 * 285.21152 * 7 6 5 9 9 C 1.55126 * 106.79244 * 214.72002 * 8 7 6 10 10 C 1.52733 * 103.97095 * 356.87811 * 9 8 7 11 11 H 1.08993 * 111.23816 * 271.21202 * 10 9 8 12 12 C 1.46342 * 111.00281 * 169.99933 * 7 6 5 13 13 H 1.09003 * 109.71173 * 47.17578 * 12 7 6 14 14 C 1.51322 * 118.14171 * 280.45412 * 12 7 6 15 15 C 1.53843 * 107.27549 * 179.39241 * 14 12 7 16 16 C 1.52713 * 111.61637 * 57.27296 * 15 14 12 17 17 N 1.45504 * 117.30583 * 142.97419 * 10 9 8 18 18 C 1.34781 * 122.24831 * 7.73125 * 17 10 9 19 19 O 1.21278 * 120.00075 * 355.50686 * 18 17 10 20 20 C 1.50698 * 119.99606 * 175.50396 * 18 17 10 21 21 S 1.81002 * 109.47136 * 179.97438 * 20 18 17 22 22 C 1.76204 * 99.99896 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00339 * 0.02562 * 22 21 20 24 24 C 1.38793 * 119.99681 * 180.02562 * 22 21 20 25 25 N 1.31633 * 120.00375 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99986 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47344 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.47094 * 299.99648 * 26 24 22 29 29 H 1.48496 * 109.47449 * 59.99412 * 26 24 22 30 30 H 1.09007 * 109.46724 * 300.00064 * 1 2 3 31 31 H 1.09004 * 109.47266 * 59.99359 * 1 2 3 32 32 H 1.08995 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47589 * 64.99407 * 5 2 1 34 34 H 1.09008 * 109.46977 * 304.99543 * 5 2 1 35 35 H 1.09001 * 109.47170 * 59.99254 * 6 5 2 36 36 H 1.08995 * 109.46936 * 300.00040 * 6 5 2 37 37 H 1.09001 * 109.99168 * 334.05174 * 8 7 6 38 38 H 1.09006 * 109.99162 * 95.33936 * 8 7 6 39 39 H 1.08999 * 110.55079 * 115.67068 * 9 8 7 40 40 H 1.09003 * 110.54552 * 238.48813 * 9 8 7 41 41 H 1.09001 * 109.89902 * 59.95347 * 14 12 7 42 42 H 1.08998 * 109.89448 * 298.83267 * 14 12 7 43 43 H 1.09004 * 109.05161 * 296.73106 * 15 14 12 44 44 H 1.08997 * 108.99609 * 177.78820 * 15 14 12 45 45 H 1.09001 * 109.16761 * 191.21707 * 16 15 14 46 46 H 1.09007 * 109.12407 * 71.98636 * 16 15 14 47 47 H 1.09010 * 109.46991 * 60.00127 * 20 18 17 48 48 H 1.09001 * 109.47507 * 300.00251 * 20 18 17 49 49 H 0.97000 * 120.00015 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0400 -0.7213 1.2491 6 6 3.5649 -0.6134 1.3136 7 7 4.0545 -1.3054 2.5132 8 6 3.7790 -0.5050 3.7425 9 6 4.9670 -0.7466 4.7103 10 6 5.8377 -1.7656 3.9780 11 1 5.5351 -2.7857 4.2141 12 6 5.5125 -1.4290 2.4891 13 1 5.9584 -0.4703 2.2241 14 6 6.1219 -2.5263 1.6439 15 6 7.6497 -2.4188 1.7879 16 6 8.0857 -2.5210 3.2479 17 7 7.2803 -1.6253 4.1061 18 6 7.8446 -0.7424 4.9538 19 8 7.1473 0.0253 5.5825 20 6 9.3420 -0.7093 5.1204 21 16 9.7877 0.5736 6.3170 22 6 11.5408 0.3966 6.3166 23 1 12.0084 -0.3471 5.6883 24 6 12.3209 1.2129 7.1237 25 7 11.7511 2.1197 7.8892 26 14 14.1794 1.0258 7.1228 27 1 14.7763 2.0076 8.0637 28 1 14.5386 -0.3502 7.5505 29 1 14.7010 1.2707 5.7542 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7716 1.2055 34 1 1.6054 -0.2618 2.1370 35 1 3.8533 0.4368 1.3572 36 1 3.9994 -1.0728 0.4259 37 1 3.7126 0.5535 3.4909 38 1 2.8486 -0.8375 4.2030 39 1 5.5173 0.1789 4.8792 40 1 4.6130 -1.1603 5.6547 41 1 5.8374 -2.3920 0.6002 42 1 5.7834 -3.4996 1.9992 43 1 7.9786 -1.4610 1.3847 44 1 8.1171 -3.2232 1.2199 45 1 9.1368 -2.2435 3.3278 46 1 7.9604 -3.5494 3.5869 47 1 9.8096 -0.4887 4.1607 48 1 9.6892 -1.6781 5.4796 49 1 12.2963 2.6899 8.4535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279540681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:34 Heat of formation + Delta-G solvation = -99.327275 kcal Electronic energy + Delta-G solvation = -28501.137058 eV Core-core repulsion = 24502.704159 eV Total energy + Delta-G solvation = -3998.432898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.58423 -41.94042 -39.69126 -37.47365 -35.32596 -34.59541 -33.98666 -32.65437 -30.63969 -30.02737 -28.69637 -27.66832 -25.91373 -24.44738 -22.94221 -22.84593 -21.98776 -21.19104 -20.47570 -19.37047 -17.73228 -17.48245 -17.37025 -16.88686 -16.86078 -16.66309 -16.36331 -16.03064 -15.85659 -15.62827 -15.35866 -15.14623 -14.79501 -14.71282 -14.52881 -14.19166 -13.87628 -13.62419 -13.53041 -13.31155 -13.16822 -13.09323 -12.92003 -12.87904 -12.75214 -12.64428 -12.59577 -12.13571 -12.00837 -11.86545 -11.73838 -11.70670 -11.64190 -11.61572 -11.47111 -11.13647 -10.30749 -10.27870 -9.67484 -9.49931 -8.67590 -8.35304 -6.13473 1.23927 1.43100 1.44347 1.54097 1.54553 2.02671 2.26773 2.77873 2.98671 3.18303 3.34290 3.57772 3.71152 3.75243 3.84339 3.87556 3.95926 3.99798 4.03842 4.10713 4.16827 4.23783 4.25745 4.28199 4.32739 4.41791 4.44275 4.54524 4.58359 4.64459 4.77755 4.80310 4.84798 4.88713 4.93071 4.99653 5.11180 5.13064 5.16216 5.18890 5.21442 5.27171 5.34130 5.40566 5.53765 5.88545 5.99109 6.18612 6.33181 7.05794 7.15853 8.73540 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.002155 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.659191 B =12987.210469 C =13417.049161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.088 0.912 4 F -0.232 7.232 5 C -0.131 4.131 6 C 0.045 3.955 7 N -0.500 5.500 8 C 0.042 3.958 9 C -0.148 4.148 10 C 0.140 3.860 11 H 0.097 0.903 12 C 0.053 3.947 13 H 0.026 0.974 14 C -0.094 4.094 15 C -0.126 4.126 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.538 3.462 19 O -0.551 6.551 20 C -0.125 4.125 21 S -0.148 6.148 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.279 1.279 28 H -0.262 1.262 29 H -0.262 1.262 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.591 -11.299 -17.832 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.046 3.954 3 H 0.106 0.894 4 F -0.213 7.213 5 C -0.169 4.169 6 C -0.084 4.084 7 N -0.223 5.223 8 C -0.086 4.086 9 C -0.186 4.186 10 C 0.036 3.964 11 H 0.115 0.885 12 C -0.057 4.057 13 H 0.045 0.955 14 C -0.132 4.132 15 C -0.165 4.165 16 C -0.022 4.022 17 N -0.337 5.337 18 C 0.326 3.674 19 O -0.429 6.429 20 C -0.276 4.276 21 S 0.080 5.920 22 C -0.695 4.695 23 H 0.100 0.900 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.204 1.204 28 H -0.186 1.186 29 H -0.186 1.186 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.129 0.871 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.846 -10.562 -16.803 28.067 hybrid contribution 2.281 0.332 -0.406 2.341 sum -17.564 -10.230 -17.209 26.633 Atomic orbital electron populations 1.22349 0.92805 1.03903 1.04282 1.21754 0.96013 0.96324 0.81319 0.89353 1.92786 1.90620 1.83781 1.54099 1.22073 0.94386 1.02640 0.97772 1.22312 0.96378 0.96429 0.93241 1.64672 1.10502 1.44845 1.02314 1.23395 0.98856 0.96041 0.90313 1.22769 0.96050 1.01412 0.98332 1.21834 0.79334 1.00013 0.95254 0.88480 1.22680 0.88636 0.98267 0.96109 0.95543 1.21254 0.94157 0.98125 0.99698 1.21910 0.95788 1.03766 0.95004 1.22081 0.95627 0.94258 0.90208 1.47906 1.06921 1.38385 1.40468 1.20068 0.89336 0.79499 0.78492 1.90568 1.63347 1.41208 1.47797 1.23397 0.95337 1.04536 1.04319 1.85531 1.07262 1.45310 1.53937 1.23162 0.91508 1.24191 1.30602 0.89966 1.26124 1.05311 0.93849 0.93857 1.70176 1.38255 1.20769 1.25518 0.85017 0.75798 0.78595 0.78676 1.20405 1.18619 1.18645 0.89253 0.91198 0.91376 0.90058 0.89110 0.94926 0.90609 0.93573 0.88532 0.89569 0.91271 0.90711 0.89713 0.92578 0.87052 0.89251 0.88974 0.87827 0.87609 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.65 71.98 0.69 -0.88 16 2 C 0.08 1.04 3.96 30.59 0.12 1.16 16 3 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 4 F -0.23 -4.26 16.76 44.97 0.75 -3.51 16 5 C -0.13 -1.72 5.10 30.59 0.16 -1.57 16 6 C 0.04 0.77 4.70 86.30 0.41 1.17 16 7 N -0.50 -9.81 5.20 -858.53 -4.47 -14.28 16 8 C 0.04 0.88 6.09 86.57 0.53 1.41 16 9 C -0.15 -4.12 5.66 31.23 0.18 -3.94 16 10 C 0.14 3.50 3.25 46.16 0.15 3.65 16 11 H 0.10 2.19 8.06 -2.39 -0.02 2.17 16 12 C 0.05 1.14 1.66 45.54 0.08 1.22 16 13 H 0.03 0.71 8.00 -2.39 -0.02 0.69 16 14 C -0.09 -1.50 5.87 30.33 0.18 -1.32 16 15 C -0.13 -1.89 5.94 30.78 0.18 -1.71 16 16 C 0.10 1.89 6.31 86.02 0.54 2.44 16 17 N -0.60 -16.68 2.91 -791.67 -2.30 -18.99 16 18 C 0.54 20.34 7.74 87.66 0.68 21.02 16 19 O -0.55 -25.00 12.46 -3.02 -0.04 -25.04 16 20 C -0.12 -5.02 4.63 71.24 0.33 -4.69 16 21 S -0.15 -8.20 20.57 -56.49 -1.16 -9.37 16 22 C -0.55 -31.19 9.50 67.95 0.65 -30.55 16 23 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 24 C 0.01 0.76 5.49 84.86 0.47 1.23 16 25 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 26 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 29 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 30 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.03 7.70 -2.38 -0.02 1.01 16 35 H 0.03 0.60 7.69 -2.39 -0.02 0.59 16 36 H 0.08 1.36 7.34 -2.39 -0.02 1.34 16 37 H 0.05 1.00 7.52 -2.39 -0.02 0.98 16 38 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.09 3.13 5.22 -5.36 -0.03 3.10 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 42 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 43 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 1.73 6.20 -2.39 -0.01 1.71 16 46 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.10 3.81 7.59 -2.39 -0.02 3.79 16 48 H 0.11 3.88 8.13 -2.39 -0.02 3.86 16 49 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -74.09 394.27 1.33 -72.76 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.90 Total: 19.97 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 5.33 Total: -11.36 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -6.49 Total: -88.93 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.04 Total: -25.04 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.75 Total: -3.51 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.37 kcal Total: -74.09 1.33 -72.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279540681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.570 kcal (2) G-P(sol) polarization free energy of solvation -74.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds