Wall clock time and date at job start Wed Apr 1 2020 04:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86809 * 119.99961 * 2 1 4 4 H 1.48497 * 109.47130 * 270.00215 * 3 2 1 5 5 H 1.48500 * 109.47009 * 30.00301 * 3 2 1 6 6 H 1.48508 * 109.46800 * 150.00143 * 3 2 1 7 7 C 1.38811 * 120.00539 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99454 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00626 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00126 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47084 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.46928 * 55.00115 * 11 10 9 13 13 C 1.52997 * 109.47241 * 175.00037 * 11 10 9 14 14 C 1.53003 * 109.47241 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47087 * 300.00042 * 14 13 11 16 16 H 1.09004 * 109.47434 * 300.00074 * 15 14 13 17 17 N 1.46498 * 109.46963 * 179.97438 * 15 14 13 18 18 C 1.34777 * 119.99828 * 154.72290 * 17 15 14 19 19 O 1.21563 * 119.99930 * 0.28080 * 18 17 15 20 20 C 1.47829 * 120.00159 * 180.27793 * 18 17 15 21 21 C 1.41581 * 120.37080 * 0.02562 * 20 18 17 22 22 C 1.34818 * 120.11349 * 180.02562 * 21 20 18 23 23 N 1.36057 * 120.82340 * 359.97438 * 22 21 20 24 24 N 1.40251 * 133.72425 * 179.97438 * 23 22 21 25 25 N 1.28978 * 107.01982 * 180.02562 * 24 23 22 26 26 N 1.28544 * 110.84168 * 0.02562 * 25 24 23 27 27 C 1.32614 * 110.18282 * 0.02562 * 26 25 24 28 28 C 1.38454 * 120.37343 * 179.72595 * 20 18 17 29 29 C 1.52997 * 109.47114 * 59.99880 * 15 14 13 30 30 C 1.52999 * 109.47087 * 295.00079 * 11 10 9 31 31 H 0.97001 * 120.00184 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99663 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47105 * 60.00024 * 10 9 7 34 34 H 1.08996 * 109.47242 * 299.99979 * 10 9 7 35 35 H 1.09004 * 109.46812 * 60.00212 * 13 11 10 36 36 H 1.08997 * 109.47293 * 300.00108 * 13 11 10 37 37 H 1.08997 * 109.46962 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.46928 * 60.00077 * 14 13 11 39 39 H 0.97001 * 120.00384 * 335.00737 * 17 15 14 40 40 H 1.07996 * 119.93947 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.58459 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.51924 * 359.97438 * 28 20 18 43 43 H 1.09009 * 109.47238 * 59.99946 * 29 15 14 44 44 H 1.08997 * 109.47293 * 179.97438 * 29 15 14 45 45 H 1.08995 * 109.47266 * 299.99829 * 30 11 10 46 46 H 1.09000 * 109.47204 * 59.99887 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 1 5.8658 -1.5453 0.8418 13 6 6.3804 -3.5108 0.1257 14 6 7.8847 -3.2312 0.1251 15 6 8.2742 -2.5390 -1.1826 16 1 8.0244 -3.1850 -2.0242 17 7 9.7144 -2.2708 -1.1829 18 6 10.3777 -2.1533 -2.3503 19 8 9.7800 -2.2649 -3.4029 20 6 11.8322 -1.8888 -2.3506 21 6 12.5362 -1.7580 -1.1293 22 6 13.8626 -1.5162 -1.1357 23 7 14.5435 -1.3950 -2.3074 24 7 15.8870 -1.1505 -2.6270 25 7 15.9726 -1.1378 -3.9139 26 7 14.8238 -1.3482 -4.4508 27 6 13.9028 -1.5133 -3.5110 28 6 12.5222 -1.7724 -3.5453 29 6 7.5102 -1.2194 -1.3083 30 6 6.0064 -1.4986 -1.3073 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3620 0.0004 33 1 3.8491 -3.0422 -0.8902 34 1 3.8485 -3.0426 0.8897 35 1 6.1309 -4.1567 -0.7162 36 1 6.1026 -4.0042 1.0570 37 1 8.4290 -4.1714 0.2142 38 1 8.1345 -2.5852 0.9666 39 1 10.1915 -2.1818 -0.3430 40 1 12.0098 -1.8511 -0.1910 41 1 14.3911 -1.4175 -0.1991 42 1 12.0064 -1.8738 -4.4887 43 1 7.7600 -0.5732 -0.4666 44 1 7.7880 -0.7260 -2.2396 45 1 5.7569 -2.1445 -2.1491 46 1 5.4621 -0.5585 -1.3969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280370062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:12 Heat of formation + Delta-G solvation = 115.926487 kcal Electronic energy + Delta-G solvation = -28763.991479 eV Core-core repulsion = 24691.661446 eV Total energy + Delta-G solvation = -4072.330033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.01166 -40.89245 -39.25383 -38.35535 -35.62696 -34.65943 -34.02370 -32.82730 -31.51054 -31.19116 -30.87893 -29.62143 -26.46751 -25.43270 -24.94088 -23.49375 -23.01068 -22.48870 -21.42149 -20.92462 -20.01010 -19.26624 -18.69608 -17.77911 -17.58790 -17.50006 -16.46847 -15.85177 -15.70462 -15.57536 -14.81749 -14.63999 -14.40197 -14.38224 -14.14816 -14.04738 -13.68823 -13.49115 -13.12114 -13.00385 -12.69814 -12.59295 -12.45407 -12.30006 -12.19843 -12.09804 -11.67164 -11.39236 -11.24048 -11.18018 -10.88852 -10.86946 -10.74262 -10.43459 -10.29458 -10.24377 -9.96962 -9.60442 -9.48282 -9.32979 -8.90378 -7.23145 -5.77826 -3.12856 -0.63932 -0.30316 1.01423 1.42386 1.88112 2.28781 2.70657 3.02896 3.34430 3.35643 3.37161 3.43152 3.54832 3.80032 4.12917 4.15728 4.46359 4.55339 4.56841 4.57504 4.72777 4.80390 4.90459 4.96658 5.06056 5.07545 5.20049 5.27713 5.31778 5.40063 5.45762 5.53023 5.57138 5.69515 5.73971 5.80962 5.91496 6.01730 6.07828 6.12185 6.21597 6.37619 6.48489 6.68513 6.80152 6.86485 7.53927 7.72054 7.99082 8.41437 9.20947 9.93311 10.13257 11.40759 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.001831 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.966094 B =15290.948543 C =15777.426165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.161 3.839 11 C -0.100 4.100 12 H 0.070 0.930 13 C -0.107 4.107 14 C -0.123 4.123 15 C 0.144 3.856 16 H 0.094 0.906 17 N -0.713 5.713 18 C 0.559 3.441 19 O -0.513 6.513 20 C -0.070 4.070 21 C -0.116 4.116 22 C 0.110 3.890 23 N -0.296 5.296 24 N -0.106 5.106 25 N -0.006 5.006 26 N -0.310 5.310 27 C 0.237 3.763 28 C -0.021 4.021 29 C -0.129 4.129 30 C -0.109 4.109 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.172 0.828 41 H 0.189 0.811 42 H 0.183 0.817 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.013 -6.493 1.428 30.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.034 3.966 11 C -0.118 4.118 12 H 0.088 0.912 13 C -0.146 4.146 14 C -0.161 4.161 15 C 0.041 3.959 16 H 0.112 0.888 17 N -0.364 5.364 18 C 0.343 3.657 19 O -0.389 6.389 20 C -0.082 4.082 21 C -0.140 4.140 22 C -0.017 4.017 23 N -0.077 5.077 24 N -0.089 5.089 25 N 0.002 4.998 26 N -0.170 5.170 27 C -0.017 4.017 28 C -0.045 4.045 29 C -0.167 4.167 30 C -0.147 4.147 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.189 0.811 41 H 0.206 0.794 42 H 0.200 0.800 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 30.869 -6.387 0.079 31.523 hybrid contribution 0.044 1.252 1.062 1.642 sum 30.913 -5.135 1.141 31.357 Atomic orbital electron populations 1.69697 1.05093 1.25773 1.57708 1.24674 0.95232 0.97164 1.02173 0.86563 0.79161 0.85086 0.77795 1.21048 1.21761 1.20417 1.19072 0.80754 0.94700 1.42787 0.89266 1.42724 1.03976 1.02277 1.91137 1.20661 0.88168 0.89230 0.98562 1.21417 0.96388 0.96177 0.97856 0.91202 1.21460 0.92581 0.97807 1.02717 1.21806 0.97835 1.00325 0.96169 1.21225 0.77282 0.97568 0.99843 0.88757 1.46032 1.10394 1.72203 1.07779 1.17758 0.85329 0.77874 0.84692 1.90885 1.68378 1.48750 1.30864 1.20380 0.95112 0.99794 0.92927 1.21190 0.92306 1.01059 0.99424 1.21592 0.92259 0.99277 0.88562 1.49076 1.08832 1.41853 1.07895 1.82852 0.89967 1.26715 1.09330 1.77933 1.15451 1.06671 0.99793 1.75296 0.94248 1.23441 1.24019 1.22782 0.96256 1.00122 0.82537 1.20837 0.87150 0.95337 1.01138 1.21941 0.96158 0.96366 1.02259 1.21509 0.93513 1.01791 0.97934 0.93086 0.80697 0.95489 0.95638 0.91392 0.91102 0.91399 0.91323 0.76579 0.81082 0.79379 0.80016 0.91843 0.91553 0.91492 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 7 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.34 5.13 -59.91 -0.31 -17.65 16 10 C 0.16 2.90 5.65 -4.04 -0.02 2.87 16 11 C -0.10 -1.30 2.23 -90.62 -0.20 -1.50 16 12 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 14 C -0.12 -0.83 5.39 -26.73 -0.14 -0.97 16 15 C 0.14 1.14 2.46 -67.93 -0.17 0.97 16 16 H 0.09 0.92 7.57 -51.93 -0.39 0.53 16 17 N -0.71 -3.85 5.03 -54.76 -0.28 -4.13 16 18 C 0.56 4.10 7.75 -12.34 -0.10 4.01 16 19 O -0.51 -5.94 16.03 5.31 0.09 -5.85 16 20 C -0.07 -0.36 5.90 -104.62 -0.62 -0.97 16 21 C -0.12 -0.21 9.48 -39.52 -0.37 -0.58 16 22 C 0.11 0.31 11.19 -16.89 -0.19 0.12 16 23 N -0.30 -2.18 3.94 -12.43 -0.05 -2.23 16 24 N -0.11 -1.06 13.98 60.35 0.84 -0.22 16 25 N -0.01 -0.06 13.35 60.35 0.81 0.74 16 26 N -0.31 -3.48 12.27 31.03 0.38 -3.10 16 27 C 0.24 2.04 8.02 -156.37 -1.25 0.79 16 28 C -0.02 -0.14 9.70 -38.64 -0.37 -0.51 16 29 C -0.13 -1.30 5.49 -26.76 -0.15 -1.44 16 30 C -0.11 -1.42 5.07 -26.76 -0.14 -1.55 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.36 8.04 4.71 -40.82 -0.19 7.84 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.40 0.74 6.67 -40.82 -0.27 0.47 16 40 H 0.17 -0.35 6.46 -52.49 -0.34 -0.69 16 41 H 0.19 -0.13 8.06 -52.49 -0.42 -0.55 16 42 H 0.18 1.18 7.67 -52.49 -0.40 0.77 16 43 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 1.09 7.18 -51.93 -0.37 0.72 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -36.68 377.80 -7.09 -43.78 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.21 Total: 1.23 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -4.12 Total: -6.91 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 2.17 Total: -55.03 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: 0.09 Total: -5.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.68 -7.09 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280370062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.703 kcal (2) G-P(sol) polarization free energy of solvation -36.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds