Wall clock time and date at job start Wed Apr 1 2020 04:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86809 * 119.99961 * 2 1 4 4 H 1.48497 * 109.47130 * 270.00215 * 3 2 1 5 5 H 1.48500 * 109.47009 * 30.00301 * 3 2 1 6 6 H 1.48508 * 109.46800 * 150.00143 * 3 2 1 7 7 C 1.38811 * 120.00539 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99454 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00626 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00126 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47084 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.46928 * 55.00115 * 11 10 9 13 13 C 1.52997 * 109.47241 * 175.00037 * 11 10 9 14 14 C 1.53003 * 109.47241 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47087 * 300.00042 * 14 13 11 16 16 H 1.09004 * 109.47434 * 300.00074 * 15 14 13 17 17 N 1.46498 * 109.46963 * 179.97438 * 15 14 13 18 18 C 1.34777 * 119.99828 * 154.72290 * 17 15 14 19 19 O 1.21563 * 119.99930 * 0.28080 * 18 17 15 20 20 C 1.47829 * 120.00159 * 180.27793 * 18 17 15 21 21 C 1.41581 * 120.37080 * 0.02562 * 20 18 17 22 22 C 1.34818 * 120.11349 * 180.02562 * 21 20 18 23 23 N 1.36057 * 120.82340 * 359.97438 * 22 21 20 24 24 N 1.40251 * 133.72425 * 179.97438 * 23 22 21 25 25 N 1.28978 * 107.01982 * 180.02562 * 24 23 22 26 26 N 1.28544 * 110.84168 * 0.02562 * 25 24 23 27 27 C 1.32614 * 110.18282 * 0.02562 * 26 25 24 28 28 C 1.38454 * 120.37343 * 179.72595 * 20 18 17 29 29 C 1.52997 * 109.47114 * 59.99880 * 15 14 13 30 30 C 1.52999 * 109.47087 * 295.00079 * 11 10 9 31 31 H 0.97001 * 120.00184 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99663 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47105 * 60.00024 * 10 9 7 34 34 H 1.08996 * 109.47242 * 299.99979 * 10 9 7 35 35 H 1.09004 * 109.46812 * 60.00212 * 13 11 10 36 36 H 1.08997 * 109.47293 * 300.00108 * 13 11 10 37 37 H 1.08997 * 109.46962 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.46928 * 60.00077 * 14 13 11 39 39 H 0.97001 * 120.00384 * 335.00737 * 17 15 14 40 40 H 1.07996 * 119.93947 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.58459 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.51924 * 359.97438 * 28 20 18 43 43 H 1.09009 * 109.47238 * 59.99946 * 29 15 14 44 44 H 1.08997 * 109.47293 * 179.97438 * 29 15 14 45 45 H 1.08995 * 109.47266 * 299.99829 * 30 11 10 46 46 H 1.09000 * 109.47204 * 59.99887 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 1 5.8658 -1.5453 0.8418 13 6 6.3804 -3.5108 0.1257 14 6 7.8847 -3.2312 0.1251 15 6 8.2742 -2.5390 -1.1826 16 1 8.0244 -3.1850 -2.0242 17 7 9.7144 -2.2708 -1.1829 18 6 10.3777 -2.1533 -2.3503 19 8 9.7800 -2.2649 -3.4029 20 6 11.8322 -1.8888 -2.3506 21 6 12.5362 -1.7580 -1.1293 22 6 13.8626 -1.5162 -1.1357 23 7 14.5435 -1.3950 -2.3074 24 7 15.8870 -1.1505 -2.6270 25 7 15.9726 -1.1378 -3.9139 26 7 14.8238 -1.3482 -4.4508 27 6 13.9028 -1.5133 -3.5110 28 6 12.5222 -1.7724 -3.5453 29 6 7.5102 -1.2194 -1.3083 30 6 6.0064 -1.4986 -1.3073 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3620 0.0004 33 1 3.8491 -3.0422 -0.8902 34 1 3.8485 -3.0426 0.8897 35 1 6.1309 -4.1567 -0.7162 36 1 6.1026 -4.0042 1.0570 37 1 8.4290 -4.1714 0.2142 38 1 8.1345 -2.5852 0.9666 39 1 10.1915 -2.1818 -0.3430 40 1 12.0098 -1.8511 -0.1910 41 1 14.3911 -1.4175 -0.1991 42 1 12.0064 -1.8738 -4.4887 43 1 7.7600 -0.5732 -0.4666 44 1 7.7880 -0.7260 -2.2396 45 1 5.7569 -2.1445 -2.1491 46 1 5.4621 -0.5585 -1.3969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280370062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:11 Heat of formation + Delta-G solvation = 88.941077 kcal Electronic energy + Delta-G solvation = -28765.161654 eV Core-core repulsion = 24691.661446 eV Total energy + Delta-G solvation = -4073.500208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.59272 -41.49613 -39.93022 -39.09409 -36.87912 -35.34053 -35.15011 -33.67560 -33.08513 -31.70013 -31.65746 -30.84815 -27.43244 -26.07925 -25.93908 -24.23536 -24.00844 -23.56509 -22.33338 -21.82578 -20.96277 -19.86363 -19.60976 -19.17608 -18.19962 -18.09352 -17.04274 -16.64452 -16.45287 -16.22791 -16.14990 -15.85904 -15.53410 -15.20106 -15.00963 -14.77246 -14.63780 -14.42526 -14.22328 -13.95970 -13.72985 -13.68491 -13.27906 -13.14173 -13.08786 -12.94683 -12.84736 -12.73946 -12.30875 -12.14315 -12.02280 -11.97141 -11.84959 -11.55026 -11.35420 -11.31066 -11.18155 -11.04511 -10.90840 -10.12819 -9.81613 -9.26416 -8.02185 -5.34748 -1.10774 -0.75798 0.57644 0.87672 1.32687 1.36166 1.41121 1.48221 1.73368 2.21986 2.48619 2.53782 2.85988 3.21506 3.29327 3.43314 3.63333 3.69955 3.76271 3.89739 3.91965 4.00426 4.03952 4.19694 4.30704 4.41859 4.49325 4.51854 4.56629 4.61304 4.63870 4.66026 4.82597 4.84388 4.97333 5.10837 5.11352 5.20445 5.21618 5.25344 5.30938 5.34372 5.44944 5.53968 5.65361 5.77304 6.22391 6.41608 7.06899 7.07401 7.09837 7.87329 8.06252 9.19585 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.001831 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.966094 B =15290.948543 C =15777.426165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.235 4.235 8 H 0.053 0.947 9 N -0.757 5.757 10 C 0.153 3.847 11 C -0.087 4.087 12 H 0.078 0.922 13 C -0.105 4.105 14 C -0.112 4.112 15 C 0.149 3.851 16 H 0.073 0.927 17 N -0.691 5.691 18 C 0.560 3.440 19 O -0.561 6.561 20 C -0.054 4.054 21 C -0.090 4.090 22 C 0.111 3.889 23 N -0.293 5.293 24 N -0.123 5.123 25 N -0.033 5.033 26 N -0.347 5.347 27 C 0.226 3.774 28 C -0.038 4.038 29 C -0.121 4.121 30 C -0.110 4.110 31 H 0.257 0.743 32 H 0.366 0.634 33 H 0.016 0.984 34 H 0.025 0.975 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.422 0.578 40 H 0.225 0.775 41 H 0.233 0.767 42 H 0.173 0.827 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.695 -6.372 4.760 33.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.366 4.366 8 H 0.072 0.928 9 N -0.403 5.403 10 C 0.028 3.972 11 C -0.106 4.106 12 H 0.097 0.903 13 C -0.143 4.143 14 C -0.149 4.149 15 C 0.045 3.955 16 H 0.091 0.909 17 N -0.344 5.344 18 C 0.346 3.654 19 O -0.440 6.440 20 C -0.066 4.066 21 C -0.113 4.113 22 C -0.015 4.015 23 N -0.073 5.073 24 N -0.106 5.106 25 N -0.025 5.025 26 N -0.209 5.209 27 C -0.027 4.027 28 C -0.063 4.063 29 C -0.159 4.159 30 C -0.148 4.148 31 H 0.066 0.934 32 H 0.200 0.800 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.262 0.738 40 H 0.241 0.759 41 H 0.249 0.751 42 H 0.190 0.810 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 33.624 -6.298 3.458 34.383 hybrid contribution -1.000 1.073 0.106 1.470 sum 32.623 -5.225 3.564 33.231 Atomic orbital electron populations 1.69890 1.07212 1.26650 1.59860 1.25544 0.96153 1.01375 1.02768 0.85408 0.78882 0.79479 0.78041 1.20727 1.22236 1.17040 1.19071 0.83075 0.93358 1.41095 0.92847 1.42737 1.02264 1.04418 1.90843 1.20908 0.91471 0.87077 0.97786 1.21320 0.92801 0.98482 0.97981 0.90336 1.21438 0.94407 0.95458 1.03044 1.21738 0.95450 1.01964 0.95780 1.21006 0.78300 0.96017 1.00179 0.90888 1.45747 1.09375 1.70954 1.08287 1.18003 0.85957 0.77049 0.84421 1.90885 1.69484 1.50842 1.32776 1.20310 0.93887 0.98644 0.93762 1.21743 0.91670 0.98157 0.99726 1.22584 0.92737 0.97681 0.88526 1.49232 1.08043 1.41182 1.08854 1.82696 0.91420 1.27707 1.08776 1.77872 1.16143 1.07900 1.00634 1.75152 0.94844 1.25146 1.25727 1.22778 0.96424 1.00708 0.82773 1.20779 0.86527 0.97052 1.01910 1.21839 0.94030 0.97837 1.02222 1.21454 0.95657 1.00135 0.97551 0.93403 0.80034 0.96592 0.95710 0.92007 0.90094 0.88812 0.88883 0.73826 0.75887 0.75079 0.80968 0.90006 0.93154 0.92860 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.36 13.97 21.65 0.30 -63.06 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.95 44.90 27.74 68.60 1.90 46.80 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.25 -10.16 6.52 99.48 0.65 -9.51 16 7 C -0.23 -13.41 10.47 84.03 0.88 -12.53 16 8 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16 9 N -0.76 -34.37 5.13 -343.45 -1.76 -36.14 16 10 C 0.15 5.43 5.65 86.38 0.49 5.92 16 11 C -0.09 -2.06 2.23 -10.79 -0.02 -2.08 16 12 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 13 C -0.10 -1.63 5.20 30.59 0.16 -1.47 16 14 C -0.11 -0.89 5.39 30.59 0.16 -0.73 16 15 C 0.15 1.80 2.46 44.99 0.11 1.91 16 16 H 0.07 1.27 7.57 -2.39 -0.02 1.25 16 17 N -0.69 -4.08 5.03 -445.42 -2.24 -6.32 16 18 C 0.56 6.56 7.75 86.78 0.67 7.23 16 19 O -0.56 -12.52 16.03 -3.91 -0.06 -12.58 16 20 C -0.05 -0.38 5.90 -19.86 -0.12 -0.49 16 21 C -0.09 0.19 9.48 22.31 0.21 0.40 16 22 C 0.11 0.11 11.19 83.25 0.93 1.04 16 23 N -0.29 -3.78 3.94 -193.24 -0.76 -4.54 16 24 N -0.12 -2.41 13.98 37.02 0.52 -1.89 16 25 N -0.03 -0.80 13.35 37.02 0.49 -0.30 16 26 N -0.35 -8.23 12.27 -55.73 -0.68 -8.92 16 27 C 0.23 3.84 8.02 134.06 1.07 4.91 16 28 C -0.04 -0.49 9.70 22.88 0.22 -0.27 16 29 C -0.12 -2.09 5.49 30.58 0.17 -1.92 16 30 C -0.11 -2.69 5.07 30.58 0.16 -2.53 16 31 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.37 15.69 4.71 -92.71 -0.44 15.25 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.42 -1.47 6.67 -92.71 -0.62 -2.09 16 40 H 0.22 -2.83 6.46 -2.91 -0.02 -2.85 16 41 H 0.23 -1.80 8.06 -2.91 -0.02 -1.83 16 42 H 0.17 2.44 7.67 -2.91 -0.02 2.41 16 43 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.04 1.33 7.18 -2.39 -0.02 1.31 16 Total: -1.00 -87.97 377.80 3.19 -84.78 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -0.08 Total: 6.28 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.56 Total: -4.11 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -4.13 Total: -121.17 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.06 Total: -12.58 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Total: -87.97 3.19 -84.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280370062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.721 kcal (2) G-P(sol) polarization free energy of solvation -87.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds