Wall clock time and date at job start Wed Apr 1 2020 04:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00091 * 2 1 4 4 H 1.48506 * 109.47368 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47080 * 299.99537 * 3 2 1 6 6 H 1.48502 * 109.46890 * 59.99414 * 3 2 1 7 7 C 1.38809 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00422 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99916 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46910 * 174.77762 * 10 9 7 12 12 H 1.08999 * 109.70235 * 312.92204 * 11 10 9 13 13 C 1.52760 * 109.50896 * 192.80275 * 11 10 9 14 14 C 1.53043 * 109.38343 * 185.70710 * 13 11 10 15 15 C 1.53037 * 109.53870 * 61.23852 * 14 13 11 16 16 C 1.53197 * 109.31401 * 298.63548 * 15 14 13 17 17 N 1.46919 * 108.77443 * 54.63502 * 16 15 14 18 18 C 1.34776 * 120.63396 * 126.36492 * 17 16 15 19 19 O 1.21281 * 120.00193 * 174.84370 * 18 17 16 20 20 C 1.50700 * 119.99540 * 354.85315 * 18 17 16 21 21 C 1.50707 * 109.47176 * 179.97438 * 20 18 17 22 22 N 1.32611 * 125.18769 * 90.01552 * 21 20 18 23 23 C 1.32825 * 109.75596 * 180.02562 * 22 21 20 24 24 N 1.33817 * 132.49764 * 179.97438 * 23 22 21 25 25 C 1.31354 * 120.86503 * 180.02562 * 24 23 22 26 26 C 1.40044 * 120.30890 * 359.97438 * 25 24 23 27 27 C 1.35789 * 119.24189 * 0.02562 * 26 25 24 28 28 N 1.35975 * 119.01815 * 0.02562 * 27 26 25 29 29 N 1.31187 * 125.18043 * 270.32719 * 21 20 18 30 30 H 0.96996 * 119.99844 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99728 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47353 * 54.77562 * 10 9 7 33 33 H 1.09002 * 109.46950 * 294.77073 * 10 9 7 34 34 H 1.08995 * 109.56374 * 65.67155 * 13 11 10 35 35 H 1.09003 * 109.38921 * 305.63127 * 13 11 10 36 36 H 1.09001 * 109.45987 * 301.22102 * 14 13 11 37 37 H 1.09003 * 109.45247 * 181.25312 * 14 13 11 38 38 H 1.09003 * 109.49813 * 178.68457 * 15 14 13 39 39 H 1.08999 * 109.52800 * 58.60643 * 15 14 13 40 40 H 1.09000 * 109.58299 * 294.84675 * 16 15 14 41 41 H 1.09001 * 109.58552 * 174.42207 * 16 15 14 42 42 H 1.09000 * 109.47793 * 59.99614 * 20 18 17 43 43 H 1.09003 * 109.47117 * 299.99145 * 20 18 17 44 44 H 1.07994 * 119.84604 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.37970 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.49021 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0689 -4.8166 0.1327 12 1 0.3597 -4.6061 0.9331 13 6 1.8296 -6.1021 0.4528 14 6 0.8570 -7.2837 0.4428 15 6 0.2345 -7.4224 -0.9483 16 6 -0.5486 -6.1488 -1.2823 17 7 0.3446 -4.9919 -1.1336 18 6 0.5011 -4.1110 -2.1416 19 8 1.1669 -3.1110 -1.9753 20 6 -0.1513 -4.3687 -3.4754 21 6 0.1763 -3.2418 -4.4210 22 7 1.2263 -3.2040 -5.2301 23 6 1.2167 -2.0724 -5.9255 24 7 2.0430 -1.5740 -6.8526 25 6 1.8104 -0.4047 -7.4040 26 6 0.6872 0.3428 -7.0287 27 6 -0.1569 -0.1549 -6.0887 28 7 0.1124 -1.3678 -5.5361 29 7 -0.5307 -2.1462 -4.5649 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.7524 -3.6747 0.8417 33 1 2.6134 -3.7565 -0.9310 34 1 2.2900 -6.0183 1.4372 35 1 2.6032 -6.2614 -0.2984 36 1 0.0700 -7.1126 1.1773 37 1 1.3945 -8.1984 0.6929 38 1 -0.4404 -8.2783 -0.9613 39 1 1.0224 -7.5693 -1.6871 40 1 -1.3925 -6.0492 -0.5996 41 1 -0.9108 -6.2012 -2.3091 42 1 -1.2317 -4.4310 -3.3455 43 1 0.2200 -5.3076 -3.8862 44 1 2.4885 -0.0181 -8.1503 45 1 0.4946 1.3041 -7.4816 46 1 -1.0293 0.4043 -5.7844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281893321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:36 Heat of formation + Delta-G solvation = 161.508158 kcal Electronic energy + Delta-G solvation = -31157.320877 eV Core-core repulsion = 27086.967413 eV Total energy + Delta-G solvation = -4070.353464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.75049 -40.09956 -38.73748 -36.87562 -34.66076 -34.37788 -32.73239 -32.18059 -31.67928 -30.56109 -29.73767 -29.09598 -25.99709 -24.69131 -24.30121 -23.74729 -22.68657 -21.98566 -20.75390 -20.33547 -18.64445 -18.31949 -17.95449 -17.15846 -16.51419 -16.27436 -16.01143 -15.55958 -15.06763 -14.57873 -14.45785 -14.32543 -13.92244 -13.79771 -13.41146 -13.31276 -13.15690 -13.04584 -12.79895 -12.50296 -12.49201 -12.21374 -12.11191 -11.84079 -11.72399 -11.54715 -10.99295 -10.87572 -10.70506 -10.67651 -10.54438 -10.26287 -10.01724 -9.96150 -9.80808 -9.52989 -9.45312 -8.68594 -8.62924 -8.38861 -7.99118 -6.43734 -5.48829 -2.67767 0.44729 0.80006 2.00489 2.61894 3.23487 3.34743 3.45820 3.54275 3.58688 3.58789 3.61786 4.01970 4.26801 4.54975 4.76867 4.77685 4.80738 4.89522 4.93655 5.01094 5.11832 5.24368 5.28048 5.41769 5.45510 5.48218 5.53757 5.68022 5.82252 5.84011 5.85287 5.89654 6.00783 6.06638 6.13495 6.20004 6.24011 6.33422 6.38010 6.41419 6.60893 6.73842 6.98874 7.32913 7.47147 7.92340 7.95128 8.08093 8.68980 8.95816 9.80583 10.42765 10.77351 11.75141 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008021 B = 0.005046 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.941435 B = 5547.572553 C = 8264.271384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.023 4.023 3 Si 0.896 3.104 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.295 1.295 7 C -0.201 4.201 8 H 0.062 0.938 9 N -0.694 5.694 10 C 0.161 3.839 11 C 0.145 3.855 12 H 0.069 0.931 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.135 4.135 16 C 0.110 3.890 17 N -0.614 5.614 18 C 0.480 3.520 19 O -0.428 6.428 20 C -0.049 4.049 21 C 0.302 3.698 22 N -0.513 5.513 23 C 0.440 3.560 24 N -0.456 5.456 25 C 0.201 3.799 26 C -0.233 4.233 27 C 0.181 3.819 28 N -0.323 5.323 29 N -0.306 5.306 30 H 0.246 0.754 31 H 0.380 0.620 32 H 0.016 0.984 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.187 0.813 45 H 0.172 0.828 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 -10.762 -12.471 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.218 4.218 3 Si 0.729 3.271 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.223 1.223 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.337 5.337 10 C 0.034 3.966 11 C 0.042 3.958 12 H 0.087 0.913 13 C -0.167 4.167 14 C -0.155 4.155 15 C -0.173 4.173 16 C -0.014 4.014 17 N -0.353 5.353 18 C 0.263 3.737 19 O -0.294 6.294 20 C -0.092 4.092 21 C 0.020 3.980 22 N -0.245 5.245 23 C 0.079 3.921 24 N -0.171 5.171 25 C 0.015 3.985 26 C -0.259 4.259 27 C 0.042 3.958 28 N -0.102 5.102 29 N -0.136 5.136 30 H 0.056 0.944 31 H 0.214 0.786 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.204 0.796 45 H 0.189 0.811 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.700 -10.978 -12.004 16.489 hybrid contribution -0.549 1.741 -0.007 1.825 sum -3.249 -9.237 -12.011 15.497 Atomic orbital electron populations 1.69675 1.04789 1.24396 1.59852 1.24568 0.95392 0.96958 1.04842 0.86223 0.78826 0.85202 0.76810 1.20887 1.22647 1.22259 1.19183 0.90611 0.84445 1.39108 0.91954 1.42192 1.05282 0.99438 1.86813 1.20836 0.92877 0.85141 0.97767 1.21361 0.94202 0.95324 0.84928 0.91309 1.21845 0.98270 0.94361 1.02182 1.21493 0.98950 0.98198 0.96854 1.21926 1.00177 0.97297 0.97921 1.21641 0.92555 0.85384 1.01826 1.47824 1.46684 1.26083 1.14727 1.19976 0.84930 0.84174 0.84650 1.91288 1.35297 1.23675 1.79185 1.20094 1.03127 0.94232 0.91737 1.23535 0.87961 0.93249 0.93232 1.70619 1.22949 1.18085 1.12809 1.22660 0.85418 0.89818 0.94201 1.67950 1.26395 1.14431 1.08286 1.23495 0.93791 0.87360 0.93885 1.21877 0.97516 1.04363 1.02113 1.22167 0.99891 0.83220 0.90486 1.48735 1.19956 1.14917 1.26567 1.78640 1.21401 1.05264 1.08317 0.94356 0.78620 0.96614 0.94849 0.90881 0.91568 0.91872 0.92058 0.91195 0.91495 0.91643 0.90251 0.87018 0.86562 0.79570 0.81073 0.80157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.56 13.06 55.49 0.72 -29.84 16 2 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 3 Si 0.90 24.55 29.55 -169.99 -5.02 19.53 16 4 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.30 -8.22 7.11 56.52 0.40 -7.82 16 6 H -0.29 -7.97 7.11 56.52 0.40 -7.57 16 7 C -0.20 -6.22 9.73 -15.06 -0.15 -6.37 16 8 H 0.06 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.69 -19.33 3.20 -59.91 -0.19 -19.52 16 10 C 0.16 3.65 4.89 -4.04 -0.02 3.63 16 11 C 0.14 2.50 2.89 -67.82 -0.20 2.31 16 12 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.13 -1.69 5.31 -26.83 -0.14 -1.83 16 14 C -0.12 -1.21 5.89 -26.69 -0.16 -1.36 16 15 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 16 C 0.11 1.22 6.35 -3.71 -0.02 1.20 16 17 N -0.61 -9.89 2.98 -165.47 -0.49 -10.38 16 18 C 0.48 9.34 7.31 -10.99 -0.08 9.26 16 19 O -0.43 -10.86 9.76 5.56 0.05 -10.81 16 20 C -0.05 -0.78 4.68 -29.03 -0.14 -0.91 16 21 C 0.30 5.95 6.59 -157.00 -1.03 4.91 16 22 N -0.51 -10.60 11.25 -11.80 -0.13 -10.74 16 23 C 0.44 8.39 8.99 -323.15 -2.91 5.48 16 24 N -0.46 -7.25 10.48 -13.82 -0.14 -7.40 16 25 C 0.20 2.05 11.27 -17.08 -0.19 1.86 16 26 C -0.23 -2.06 10.07 -39.78 -0.40 -2.46 16 27 C 0.18 2.28 11.32 -16.59 -0.19 2.09 16 28 N -0.32 -5.82 3.91 -13.84 -0.05 -5.87 16 29 N -0.31 -6.26 12.78 32.39 0.41 -5.84 16 30 H 0.25 7.80 8.31 -40.82 -0.34 7.47 16 31 H 0.38 11.26 7.23 -40.82 -0.30 10.96 16 32 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.03 0.84 6.36 -51.93 -0.33 0.51 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 42 H 0.11 1.46 7.73 -51.93 -0.40 1.06 16 43 H 0.12 1.47 7.90 -51.93 -0.41 1.06 16 44 H 0.19 0.96 8.06 -52.49 -0.42 0.53 16 45 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -43.03 373.83 -11.45 -54.49 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.36 Total: 5.23 kcal Atomic # 6 Polarization: 21.40 SS G_CDS: -5.88 Total: 15.52 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: 0.12 Total: -89.59 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.05 Total: -10.81 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.02 Total: 19.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -43.03 -11.45 -54.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281893321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.997 kcal (2) G-P(sol) polarization free energy of solvation -43.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds