Wall clock time and date at job start Wed Apr 1 2020 04:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00091 * 2 1 4 4 H 1.48506 * 109.47368 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47080 * 299.99537 * 3 2 1 6 6 H 1.48502 * 109.46890 * 59.99414 * 3 2 1 7 7 C 1.38809 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00422 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99916 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46910 * 174.77762 * 10 9 7 12 12 H 1.08999 * 109.70235 * 312.92204 * 11 10 9 13 13 C 1.52760 * 109.50896 * 192.80275 * 11 10 9 14 14 C 1.53043 * 109.38343 * 185.70710 * 13 11 10 15 15 C 1.53037 * 109.53870 * 61.23852 * 14 13 11 16 16 C 1.53197 * 109.31401 * 298.63548 * 15 14 13 17 17 N 1.46919 * 108.77443 * 54.63502 * 16 15 14 18 18 C 1.34776 * 120.63396 * 126.36492 * 17 16 15 19 19 O 1.21281 * 120.00193 * 174.84370 * 18 17 16 20 20 C 1.50700 * 119.99540 * 354.85315 * 18 17 16 21 21 C 1.50707 * 109.47176 * 179.97438 * 20 18 17 22 22 N 1.32611 * 125.18769 * 90.01552 * 21 20 18 23 23 C 1.32825 * 109.75596 * 180.02562 * 22 21 20 24 24 N 1.33817 * 132.49764 * 179.97438 * 23 22 21 25 25 C 1.31354 * 120.86503 * 180.02562 * 24 23 22 26 26 C 1.40044 * 120.30890 * 359.97438 * 25 24 23 27 27 C 1.35789 * 119.24189 * 0.02562 * 26 25 24 28 28 N 1.35975 * 119.01815 * 0.02562 * 27 26 25 29 29 N 1.31187 * 125.18043 * 270.32719 * 21 20 18 30 30 H 0.96996 * 119.99844 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99728 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47353 * 54.77562 * 10 9 7 33 33 H 1.09002 * 109.46950 * 294.77073 * 10 9 7 34 34 H 1.08995 * 109.56374 * 65.67155 * 13 11 10 35 35 H 1.09003 * 109.38921 * 305.63127 * 13 11 10 36 36 H 1.09001 * 109.45987 * 301.22102 * 14 13 11 37 37 H 1.09003 * 109.45247 * 181.25312 * 14 13 11 38 38 H 1.09003 * 109.49813 * 178.68457 * 15 14 13 39 39 H 1.08999 * 109.52800 * 58.60643 * 15 14 13 40 40 H 1.09000 * 109.58299 * 294.84675 * 16 15 14 41 41 H 1.09001 * 109.58552 * 174.42207 * 16 15 14 42 42 H 1.09000 * 109.47793 * 59.99614 * 20 18 17 43 43 H 1.09003 * 109.47117 * 299.99145 * 20 18 17 44 44 H 1.07994 * 119.84604 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.37970 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.49021 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0689 -4.8166 0.1327 12 1 0.3597 -4.6061 0.9331 13 6 1.8296 -6.1021 0.4528 14 6 0.8570 -7.2837 0.4428 15 6 0.2345 -7.4224 -0.9483 16 6 -0.5486 -6.1488 -1.2823 17 7 0.3446 -4.9919 -1.1336 18 6 0.5011 -4.1110 -2.1416 19 8 1.1669 -3.1110 -1.9753 20 6 -0.1513 -4.3687 -3.4754 21 6 0.1763 -3.2418 -4.4210 22 7 1.2263 -3.2040 -5.2301 23 6 1.2167 -2.0724 -5.9255 24 7 2.0430 -1.5740 -6.8526 25 6 1.8104 -0.4047 -7.4040 26 6 0.6872 0.3428 -7.0287 27 6 -0.1569 -0.1549 -6.0887 28 7 0.1124 -1.3678 -5.5361 29 7 -0.5307 -2.1462 -4.5649 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.7524 -3.6747 0.8417 33 1 2.6134 -3.7565 -0.9310 34 1 2.2900 -6.0183 1.4372 35 1 2.6032 -6.2614 -0.2984 36 1 0.0700 -7.1126 1.1773 37 1 1.3945 -8.1984 0.6929 38 1 -0.4404 -8.2783 -0.9613 39 1 1.0224 -7.5693 -1.6871 40 1 -1.3925 -6.0492 -0.5996 41 1 -0.9108 -6.2012 -2.3091 42 1 -1.2317 -4.4310 -3.3455 43 1 0.2200 -5.3076 -3.8862 44 1 2.4885 -0.0181 -8.1503 45 1 0.4946 1.3041 -7.4816 46 1 -1.0293 0.4043 -5.7844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281893321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:35 Heat of formation + Delta-G solvation = 131.243561 kcal Electronic energy + Delta-G solvation = -31158.633248 eV Core-core repulsion = 27086.967413 eV Total energy + Delta-G solvation = -4071.665835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.95670 -41.47458 -39.84032 -38.16246 -36.48824 -35.60351 -34.22021 -33.60713 -33.00501 -31.78252 -31.53208 -30.28359 -27.61931 -25.92214 -25.61358 -24.87764 -24.34550 -23.42229 -22.16327 -21.42277 -20.00632 -19.46273 -19.17042 -19.06600 -17.98647 -17.33596 -17.21630 -16.84923 -16.73764 -16.21860 -15.51011 -15.44874 -15.31193 -15.08370 -14.97927 -14.86541 -14.39734 -14.21347 -14.02477 -13.82425 -13.72135 -13.69791 -13.52956 -13.15029 -13.03539 -13.01723 -12.85546 -12.71557 -12.16434 -12.04016 -11.89841 -11.70794 -11.45458 -11.34917 -11.32934 -11.05102 -10.91079 -10.72588 -9.97728 -9.88088 -9.40087 -8.66561 -7.87893 -5.05785 -0.51487 -0.29595 0.90300 1.32566 1.35184 1.36215 1.45278 1.91177 2.10802 2.31706 2.42160 2.54619 2.85941 3.40080 3.43621 3.47997 3.64409 3.85662 3.94024 3.99285 4.05835 4.13033 4.18710 4.25028 4.36855 4.39327 4.43470 4.50162 4.53374 4.67407 4.79740 4.85571 4.87827 5.01487 5.05043 5.07928 5.11613 5.16579 5.19371 5.28445 5.32716 5.37199 5.44433 5.56188 5.85212 6.32583 6.38261 6.62009 6.80976 7.38316 7.53718 8.21000 8.44216 9.36641 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008021 B = 0.005046 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.941435 B = 5547.572553 C = 8264.271384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.085 4.085 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.209 4.209 8 H 0.053 0.947 9 N -0.698 5.698 10 C 0.166 3.834 11 C 0.151 3.849 12 H 0.061 0.939 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.128 4.128 16 C 0.099 3.901 17 N -0.609 5.609 18 C 0.477 3.523 19 O -0.501 6.501 20 C -0.041 4.041 21 C 0.287 3.713 22 N -0.556 5.556 23 C 0.418 3.582 24 N -0.494 5.494 25 C 0.212 3.788 26 C -0.192 4.192 27 C 0.137 3.863 28 N -0.334 5.334 29 N -0.351 5.351 30 H 0.243 0.757 31 H 0.367 0.633 32 H 0.014 0.986 33 H 0.008 0.992 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.245 0.755 45 H 0.233 0.767 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 -11.174 -14.011 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.276 4.276 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.227 1.227 6 H -0.213 1.213 7 C -0.342 4.342 8 H 0.071 0.929 9 N -0.339 5.339 10 C 0.039 3.961 11 C 0.047 3.953 12 H 0.079 0.921 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.166 4.166 16 C -0.023 4.023 17 N -0.346 5.346 18 C 0.261 3.739 19 O -0.374 6.374 20 C -0.083 4.083 21 C 0.006 3.994 22 N -0.290 5.290 23 C 0.057 3.943 24 N -0.210 5.210 25 C 0.029 3.971 26 C -0.216 4.216 27 C 0.002 3.998 28 N -0.113 5.113 29 N -0.182 5.182 30 H 0.052 0.948 31 H 0.199 0.801 32 H 0.031 0.969 33 H 0.026 0.974 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.261 0.739 45 H 0.249 0.751 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.923 -11.429 -13.557 17.971 hybrid contribution -0.421 1.962 0.279 2.026 sum -3.344 -9.467 -13.278 16.647 Atomic orbital electron populations 1.69842 1.06137 1.24783 1.61358 1.25337 0.96401 1.00242 1.05623 0.85203 0.77892 0.80904 0.76759 1.20044 1.22682 1.21262 1.19455 0.90424 0.86165 1.38124 0.92852 1.42234 1.04618 1.00346 1.86670 1.20846 0.93851 0.85411 0.95990 1.21204 0.93344 0.95279 0.85440 0.92101 1.21793 0.98454 0.93424 1.02166 1.21499 0.98479 0.97297 0.97752 1.21918 1.00467 0.97157 0.97090 1.22077 0.92176 0.84151 1.03860 1.47961 1.46557 1.26788 1.13333 1.20638 0.83594 0.83529 0.86089 1.91247 1.38687 1.26643 1.80781 1.20196 1.04390 0.94546 0.89155 1.24031 0.87852 0.93920 0.93600 1.70497 1.24134 1.20008 1.14344 1.22971 0.86286 0.90070 0.94924 1.68086 1.26758 1.17203 1.08995 1.24675 0.94411 0.85247 0.92807 1.22661 0.94789 1.05319 0.98824 1.23085 1.02295 0.82356 0.92094 1.48798 1.19807 1.16224 1.26490 1.78413 1.23272 1.06240 1.10298 0.94822 0.80089 0.96865 0.97419 0.90274 0.92250 0.91284 0.89765 0.87767 0.91740 0.90576 0.87804 0.84356 0.83397 0.73934 0.75074 0.78081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.54 13.06 21.65 0.28 -65.25 16 2 C -0.09 -5.52 5.50 84.86 0.47 -5.06 16 3 Si 0.96 51.96 29.55 68.60 2.03 53.99 16 4 H -0.28 -14.32 7.11 99.48 0.71 -13.62 16 5 H -0.30 -16.03 7.11 99.48 0.71 -15.33 16 6 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 7 C -0.21 -13.51 9.73 84.03 0.82 -12.69 16 8 H 0.05 3.46 7.83 -2.91 -0.02 3.43 16 9 N -0.70 -41.06 3.20 -343.45 -1.10 -42.16 16 10 C 0.17 7.92 4.89 86.38 0.42 8.35 16 11 C 0.15 5.33 2.89 44.83 0.13 5.46 16 12 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.12 -3.06 5.31 30.53 0.16 -2.90 16 14 C -0.11 -1.98 5.89 30.62 0.18 -1.80 16 15 C -0.13 -1.98 6.08 30.67 0.19 -1.79 16 16 C 0.10 1.97 6.35 86.37 0.55 2.52 16 17 N -0.61 -19.70 2.98 -795.82 -2.37 -22.07 16 18 C 0.48 19.32 7.31 87.66 0.64 19.96 16 19 O -0.50 -27.17 9.76 -3.03 -0.03 -27.19 16 20 C -0.04 -1.32 4.68 29.10 0.14 -1.19 16 21 C 0.29 11.97 6.59 138.69 0.91 12.88 16 22 N -0.56 -24.36 11.25 -191.24 -2.15 -26.51 16 23 C 0.42 16.57 8.99 261.60 2.35 18.93 16 24 N -0.49 -15.56 10.48 -197.64 -2.07 -17.63 16 25 C 0.21 3.65 11.27 85.20 0.96 4.61 16 26 C -0.19 -2.70 10.07 22.14 0.22 -2.47 16 27 C 0.14 3.35 11.32 83.48 0.94 4.30 16 28 N -0.33 -12.50 3.91 -197.70 -0.77 -13.27 16 29 N -0.35 -15.19 12.78 -51.44 -0.66 -15.85 16 30 H 0.24 15.87 8.31 -92.71 -0.77 15.10 16 31 H 0.37 23.03 7.23 -92.71 -0.67 22.36 16 32 H 0.01 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.01 0.43 6.36 -2.39 -0.02 0.42 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 1.59 5.93 -2.39 -0.01 1.57 16 42 H 0.14 3.59 7.73 -2.39 -0.02 3.57 16 43 H 0.15 3.66 7.90 -2.39 -0.02 3.65 16 44 H 0.24 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.23 0.38 8.06 -2.91 -0.02 0.36 16 46 H 0.20 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -105.15 373.83 2.59 -102.56 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.35 Total: 24.28 kcal Atomic # 6 Polarization: 40.01 SS G_CDS: 9.08 Total: 49.10 kcal Atomic # 7 Polarization: -193.90 SS G_CDS: -8.84 Total: -202.74 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.03 Total: -27.19 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.03 Total: 53.99 kcal Total: -105.15 2.59 -102.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281893321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.806 kcal (2) G-P(sol) polarization free energy of solvation -105.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds