Wall clock time and date at job start Wed Apr 1 2020 04:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 120.00054 * 2 1 4 4 H 1.48501 * 109.47326 * 239.99752 * 3 2 1 5 5 H 1.48498 * 109.47254 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47425 * 119.99633 * 3 2 1 7 7 C 1.38813 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99899 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00211 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47409 * 184.98152 * 10 9 7 12 12 N 1.46495 * 109.47666 * 54.80914 * 11 10 9 13 13 C 1.34781 * 120.00005 * 64.35157 * 12 11 10 14 14 O 1.21522 * 119.99584 * 354.59955 * 13 12 11 15 15 C 1.48123 * 119.99987 * 174.60277 * 13 12 11 16 16 C 1.39819 * 119.37050 * 179.97438 * 15 13 12 17 17 C 1.36964 * 119.60429 * 179.97438 * 16 15 13 18 18 C 1.39815 * 118.25591 * 0.02562 * 17 16 15 19 19 N 1.34651 * 135.00613 * 180.02562 * 18 17 16 20 20 N 1.28672 * 109.15965 * 179.97438 * 19 18 17 21 21 N 1.28768 * 111.84565 * 359.97438 * 20 19 18 22 22 H 0.97004 * 125.85811 * 180.02562 * 21 20 19 23 23 C 1.37250 * 108.28509 * 0.02562 * 21 20 19 24 24 N 1.31956 * 134.71196 * 180.32947 * 23 21 20 25 25 C 1.53006 * 109.47290 * 174.81364 * 11 10 9 26 26 C 1.52999 * 109.46815 * 179.97438 * 25 11 10 27 27 C 1.52996 * 109.47430 * 299.99708 * 26 25 11 28 28 C 1.52996 * 109.47208 * 60.00164 * 27 26 25 29 29 C 1.53002 * 109.47143 * 300.00215 * 28 27 26 30 30 H 0.97000 * 119.99955 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00066 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47225 * 64.97334 * 10 9 7 33 33 H 1.09006 * 109.46832 * 304.98023 * 10 9 7 34 34 H 0.97004 * 120.00373 * 244.35700 * 12 11 10 35 35 H 1.08000 * 120.19496 * 0.02764 * 16 15 13 36 36 H 1.08004 * 120.87469 * 180.02562 * 17 16 15 37 37 H 1.08995 * 109.46869 * 299.99175 * 25 11 10 38 38 H 1.08996 * 109.47279 * 59.99821 * 25 11 10 39 39 H 1.09001 * 109.47455 * 59.99906 * 26 25 11 40 40 H 1.09004 * 109.46833 * 179.97438 * 26 25 11 41 41 H 1.08999 * 109.47040 * 299.99725 * 27 26 25 42 42 H 1.09006 * 109.47285 * 180.02562 * 27 26 25 43 43 H 1.08999 * 109.47119 * 179.97438 * 28 27 26 44 44 H 1.09001 * 109.46884 * 60.00288 * 28 27 26 45 45 H 1.08996 * 109.46862 * 299.99677 * 29 28 27 46 46 H 1.08994 * 109.47214 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0686 -4.8170 -0.1238 12 7 0.2344 -4.6212 -1.3120 13 6 0.7942 -4.6341 -2.5380 14 8 2.0015 -4.7097 -2.6539 15 6 -0.0622 -4.5562 -3.7441 16 6 0.5324 -4.5701 -5.0094 17 6 -0.2549 -4.4987 -6.1279 18 6 -1.6401 -4.4132 -5.9578 19 7 -2.6979 -4.3304 -6.7869 20 7 -3.7777 -4.2746 -6.0893 21 7 -3.5343 -4.3142 -4.8255 22 1 -4.1974 -4.2855 -4.1180 23 6 -2.1759 -4.4037 -4.6511 24 7 -1.3774 -4.4798 -3.6034 25 6 1.8391 -6.1327 -0.2527 26 6 0.8496 -7.2929 -0.3776 27 6 -0.0386 -7.3420 0.8672 28 6 -0.8090 -6.0264 0.9962 29 6 0.1804 -4.8661 1.1210 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6155 -3.7537 0.9333 33 1 2.7506 -3.6772 -0.8399 34 1 -0.7208 -4.4822 -1.2165 35 1 1.6061 -4.6375 -5.1043 36 1 0.1826 -4.5083 -7.1152 37 1 2.4721 -6.0976 -1.1393 38 1 2.4597 -6.2784 0.6314 39 1 0.2286 -7.1474 -1.2615 40 1 1.3985 -8.2301 -0.4698 41 1 0.5823 -7.4876 1.7511 42 1 -0.7433 -8.1689 0.7784 43 1 -1.4422 -6.0616 1.8827 44 1 -1.4300 -5.8809 0.1122 45 1 0.8013 -5.0117 2.0050 46 1 -0.3684 -3.9289 1.2125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282606645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:30 Heat of formation + Delta-G solvation = 98.585136 kcal Electronic energy + Delta-G solvation = -31080.681359 eV Core-core repulsion = 27007.599348 eV Total energy + Delta-G solvation = -4073.082011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.57931 -40.63159 -39.19321 -37.42815 -34.69481 -34.51986 -33.31383 -32.07552 -31.52393 -30.81622 -30.60477 -29.21247 -25.85262 -25.27014 -24.13674 -23.01967 -22.95855 -22.37239 -21.47995 -20.44084 -19.16890 -18.85887 -18.57948 -17.91534 -17.17393 -16.80150 -15.85573 -15.27955 -15.12469 -14.93845 -14.67239 -14.35772 -13.86778 -13.70156 -13.66606 -13.37941 -13.22576 -13.11456 -12.86766 -12.60233 -12.27613 -12.17070 -12.05672 -12.00341 -11.88407 -11.71201 -11.31864 -10.97403 -10.86499 -10.77385 -10.55484 -10.31412 -10.17000 -10.07899 -9.88054 -9.63807 -9.46188 -9.36749 -9.26057 -8.79302 -8.56134 -6.84713 -5.73289 -2.99527 -0.06832 0.77923 1.88487 1.92040 2.79316 3.20300 3.46265 3.50470 3.51525 3.52792 3.69132 4.02274 4.16430 4.56589 4.61968 4.64137 4.86622 4.89871 4.92997 5.16257 5.23863 5.31123 5.32629 5.51094 5.57053 5.62408 5.64844 5.67873 5.69423 5.79307 5.86436 6.06019 6.10245 6.14153 6.21829 6.29266 6.30907 6.34858 6.39708 6.50412 6.57449 6.64016 6.87071 7.06685 7.18707 7.74527 7.83455 7.88344 8.43759 8.46190 9.57625 10.15723 10.51001 11.49749 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007741 B = 0.004523 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3616.059336 B = 6189.235913 C = 8327.808685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.230 4.230 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.141 3.859 11 C 0.174 3.826 12 N -0.680 5.680 13 C 0.578 3.422 14 O -0.517 6.517 15 C 0.162 3.838 16 C -0.121 4.121 17 C -0.004 4.004 18 C -0.028 4.028 19 N -0.240 5.240 20 N 0.005 4.995 21 N -0.402 5.402 22 H 0.459 0.541 23 C 0.219 3.781 24 N -0.443 5.443 25 C -0.130 4.130 26 C -0.114 4.114 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.119 4.119 30 H 0.253 0.747 31 H 0.381 0.619 32 H 0.021 0.979 33 H 0.047 0.953 34 H 0.406 0.594 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 -16.484 -5.704 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.362 4.362 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.012 3.988 11 C 0.089 3.911 12 N -0.331 5.331 13 C 0.360 3.640 14 O -0.391 6.391 15 C 0.007 3.993 16 C -0.144 4.144 17 C -0.035 4.035 18 C -0.155 4.155 19 N -0.117 5.117 20 N 0.022 4.978 21 N -0.134 5.134 22 H 0.307 0.693 23 C -0.026 4.026 24 N -0.159 5.159 25 C -0.168 4.168 26 C -0.152 4.152 27 C -0.155 4.155 28 C -0.158 4.158 29 C -0.157 4.157 30 H 0.063 0.937 31 H 0.215 0.785 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.243 0.757 35 H 0.185 0.815 36 H 0.176 0.824 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.187 -16.335 -6.064 18.180 hybrid contribution 0.139 1.226 0.556 1.354 sum -5.048 -15.109 -5.508 16.855 Atomic orbital electron populations 1.69638 1.05033 1.25489 1.58443 1.24669 0.95478 0.97475 1.03431 0.86297 0.78528 0.83732 0.77848 1.21387 1.21845 1.21329 1.19187 0.90996 0.84178 1.41798 0.91366 1.42219 1.05591 0.99731 1.89408 1.21112 0.93558 0.85146 0.98951 1.20673 0.91312 0.95415 0.83721 1.45739 1.12144 1.70498 1.04715 1.17464 0.86663 0.77463 0.82364 1.90749 1.12933 1.49568 1.85897 1.21474 0.87548 0.95180 0.95084 1.21776 1.02992 0.98971 0.90704 1.20499 0.88336 0.94023 1.00657 1.20654 0.96072 1.07704 0.91070 1.75379 0.93913 1.17612 1.24832 1.78078 1.20956 1.11771 0.86995 1.44648 1.05415 1.55248 1.08058 0.69294 1.19800 0.86201 1.04603 0.91973 1.66310 1.04154 1.13471 1.31985 1.21917 0.98217 0.92946 1.03771 1.21464 0.97720 0.98005 0.97972 1.21536 0.98454 0.97161 0.98349 1.21561 0.97894 0.94733 1.01582 1.21783 0.97921 0.99143 0.96864 0.93716 0.78468 0.96154 0.93525 0.75730 0.81521 0.82396 0.89480 0.91134 0.92385 0.92450 0.92063 0.92645 0.92000 0.92158 0.90385 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.08 13.06 55.49 0.72 -27.36 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.75 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.47 9.99 -15.06 -0.15 -6.62 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -17.94 5.19 -59.91 -0.31 -18.25 16 10 C 0.14 2.86 4.93 -4.05 -0.02 2.84 16 11 C 0.17 2.72 0.32 -131.82 -0.04 2.68 16 12 N -0.68 -10.56 3.47 -48.45 -0.17 -10.72 16 13 C 0.58 9.44 7.14 -12.20 -0.09 9.35 16 14 O -0.52 -9.41 12.58 5.35 0.07 -9.34 16 15 C 0.16 2.34 6.74 -82.93 -0.56 1.78 16 16 C -0.12 -1.46 9.55 -39.45 -0.38 -1.84 16 17 C 0.00 -0.05 10.16 -39.45 -0.40 -0.45 16 18 C -0.03 -0.36 7.38 -84.90 -0.63 -0.98 16 19 N -0.24 -3.21 12.43 32.12 0.40 -2.81 16 20 N 0.01 0.06 13.28 60.35 0.80 0.86 16 21 N -0.40 -4.26 7.06 31.13 0.22 -4.04 16 22 H 0.46 3.19 8.96 -190.26 -1.71 1.48 16 23 C 0.22 2.85 8.56 -156.28 -1.34 1.51 16 24 N -0.44 -6.16 9.55 -8.90 -0.09 -6.25 16 25 C -0.13 -1.76 4.45 -26.73 -0.12 -1.88 16 26 C -0.11 -1.30 5.76 -26.73 -0.15 -1.45 16 27 C -0.12 -1.21 5.92 -26.74 -0.16 -1.37 16 28 C -0.12 -1.36 5.75 -26.73 -0.15 -1.51 16 29 C -0.12 -1.68 4.64 -26.73 -0.12 -1.81 16 30 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.38 9.74 6.45 -40.82 -0.26 9.48 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 1.04 6.45 -51.93 -0.34 0.71 16 34 H 0.41 6.05 6.80 -40.82 -0.28 5.77 16 35 H 0.17 1.79 7.61 -52.49 -0.40 1.39 16 36 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.09 1.33 6.04 -51.93 -0.31 1.01 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.70 7.54 -51.93 -0.39 0.31 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.68 6.95 -51.93 -0.36 0.32 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.08 1.32 7.09 -51.93 -0.37 0.95 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -33.26 369.38 -9.56 -42.81 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.34 Total: 12.09 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -4.41 Total: -0.28 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: 1.58 Total: -68.57 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.26 -9.56 -42.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282606645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.399 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds