Wall clock time and date at job start Wed Apr 1 2020 04:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 120.00054 * 2 1 4 4 H 1.48501 * 109.47326 * 239.99752 * 3 2 1 5 5 H 1.48498 * 109.47254 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47425 * 119.99633 * 3 2 1 7 7 C 1.38813 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99899 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00211 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47409 * 184.98152 * 10 9 7 12 12 N 1.46495 * 109.47666 * 54.80914 * 11 10 9 13 13 C 1.34781 * 120.00005 * 64.35157 * 12 11 10 14 14 O 1.21522 * 119.99584 * 354.59955 * 13 12 11 15 15 C 1.48123 * 119.99987 * 174.60277 * 13 12 11 16 16 C 1.39819 * 119.37050 * 179.97438 * 15 13 12 17 17 C 1.36964 * 119.60429 * 179.97438 * 16 15 13 18 18 C 1.39815 * 118.25591 * 0.02562 * 17 16 15 19 19 N 1.34651 * 135.00613 * 180.02562 * 18 17 16 20 20 N 1.28672 * 109.15965 * 179.97438 * 19 18 17 21 21 N 1.28768 * 111.84565 * 359.97438 * 20 19 18 22 22 H 0.97004 * 125.85811 * 180.02562 * 21 20 19 23 23 C 1.37250 * 108.28509 * 0.02562 * 21 20 19 24 24 N 1.31956 * 134.71196 * 180.32947 * 23 21 20 25 25 C 1.53006 * 109.47290 * 174.81364 * 11 10 9 26 26 C 1.52999 * 109.46815 * 179.97438 * 25 11 10 27 27 C 1.52996 * 109.47430 * 299.99708 * 26 25 11 28 28 C 1.52996 * 109.47208 * 60.00164 * 27 26 25 29 29 C 1.53002 * 109.47143 * 300.00215 * 28 27 26 30 30 H 0.97000 * 119.99955 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00066 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47225 * 64.97334 * 10 9 7 33 33 H 1.09006 * 109.46832 * 304.98023 * 10 9 7 34 34 H 0.97004 * 120.00373 * 244.35700 * 12 11 10 35 35 H 1.08000 * 120.19496 * 0.02764 * 16 15 13 36 36 H 1.08004 * 120.87469 * 180.02562 * 17 16 15 37 37 H 1.08995 * 109.46869 * 299.99175 * 25 11 10 38 38 H 1.08996 * 109.47279 * 59.99821 * 25 11 10 39 39 H 1.09001 * 109.47455 * 59.99906 * 26 25 11 40 40 H 1.09004 * 109.46833 * 179.97438 * 26 25 11 41 41 H 1.08999 * 109.47040 * 299.99725 * 27 26 25 42 42 H 1.09006 * 109.47285 * 180.02562 * 27 26 25 43 43 H 1.08999 * 109.47119 * 179.97438 * 28 27 26 44 44 H 1.09001 * 109.46884 * 60.00288 * 28 27 26 45 45 H 1.08996 * 109.46862 * 299.99677 * 29 28 27 46 46 H 1.08994 * 109.47214 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0686 -4.8170 -0.1238 12 7 0.2344 -4.6212 -1.3120 13 6 0.7942 -4.6341 -2.5380 14 8 2.0015 -4.7097 -2.6539 15 6 -0.0622 -4.5562 -3.7441 16 6 0.5324 -4.5701 -5.0094 17 6 -0.2549 -4.4987 -6.1279 18 6 -1.6401 -4.4132 -5.9578 19 7 -2.6979 -4.3304 -6.7869 20 7 -3.7777 -4.2746 -6.0893 21 7 -3.5343 -4.3142 -4.8255 22 1 -4.1974 -4.2855 -4.1180 23 6 -2.1759 -4.4037 -4.6511 24 7 -1.3774 -4.4798 -3.6034 25 6 1.8391 -6.1327 -0.2527 26 6 0.8496 -7.2929 -0.3776 27 6 -0.0386 -7.3420 0.8672 28 6 -0.8090 -6.0264 0.9962 29 6 0.1804 -4.8661 1.1210 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6155 -3.7537 0.9333 33 1 2.7506 -3.6772 -0.8399 34 1 -0.7208 -4.4822 -1.2165 35 1 1.6061 -4.6375 -5.1043 36 1 0.1826 -4.5083 -7.1152 37 1 2.4721 -6.0976 -1.1393 38 1 2.4597 -6.2784 0.6314 39 1 0.2286 -7.1474 -1.2615 40 1 1.3985 -8.2301 -0.4698 41 1 0.5823 -7.4876 1.7511 42 1 -0.7433 -8.1689 0.7784 43 1 -1.4422 -6.0616 1.8827 44 1 -1.4300 -5.8809 0.1122 45 1 0.8013 -5.0117 2.0050 46 1 -0.3684 -3.9289 1.2125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282606645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:29 Heat of formation + Delta-G solvation = 75.730139 kcal Electronic energy + Delta-G solvation = -31081.672426 eV Core-core repulsion = 27007.599348 eV Total energy + Delta-G solvation = -4074.073078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.54423 -41.84484 -40.24864 -38.62005 -36.38646 -35.51150 -34.70285 -33.35716 -32.82377 -32.10379 -31.67403 -30.65776 -27.01597 -26.89229 -25.12183 -24.67821 -23.93141 -23.53886 -22.68886 -21.61486 -20.24740 -19.93092 -19.59894 -19.21572 -19.04957 -17.77557 -16.97500 -16.71602 -16.45448 -16.15284 -16.06153 -15.79134 -15.18981 -14.94889 -14.66035 -14.61159 -14.59429 -14.46334 -14.14275 -13.73107 -13.59205 -13.43198 -13.17183 -13.02288 -12.98529 -12.82936 -12.82786 -12.75086 -12.57812 -12.14351 -11.98585 -11.86339 -11.55309 -11.39213 -11.11317 -10.98156 -10.91819 -10.50111 -10.42898 -10.25551 -9.86816 -8.93377 -7.94222 -5.19828 -1.07811 -0.18597 0.88498 0.99058 1.44585 1.46998 1.52760 1.67237 2.04623 2.54956 2.57152 2.58207 3.02359 3.20087 3.39280 3.54354 3.66471 3.72717 3.87201 3.89099 4.11387 4.21999 4.23548 4.26983 4.47823 4.51060 4.60866 4.62892 4.69640 4.72517 4.82370 4.88339 4.93676 5.12370 5.14927 5.17543 5.21458 5.26841 5.31624 5.38527 5.44860 5.49415 5.54088 5.54371 5.71101 6.15566 6.28092 6.59797 6.90233 7.17963 7.35777 8.11862 8.38181 9.28556 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007741 B = 0.004523 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3616.059336 B = 6189.235913 C = 8327.808685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.239 4.239 8 H 0.066 0.934 9 N -0.730 5.730 10 C 0.141 3.859 11 C 0.180 3.820 12 N -0.677 5.677 13 C 0.572 3.428 14 O -0.542 6.542 15 C 0.141 3.859 16 C -0.122 4.122 17 C 0.011 3.989 18 C -0.037 4.037 19 N -0.257 5.257 20 N 0.008 4.992 21 N -0.384 5.384 22 H 0.473 0.527 23 C 0.203 3.797 24 N -0.450 5.450 25 C -0.124 4.124 26 C -0.108 4.108 27 C -0.112 4.112 28 C -0.114 4.114 29 C -0.113 4.113 30 H 0.249 0.751 31 H 0.376 0.624 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.409 0.591 35 H 0.179 0.821 36 H 0.195 0.805 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 -17.706 -5.950 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.795 3.205 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.084 0.916 9 N -0.373 5.373 10 C 0.013 3.987 11 C 0.094 3.906 12 N -0.328 5.328 13 C 0.356 3.644 14 O -0.419 6.419 15 C -0.013 4.013 16 C -0.145 4.145 17 C -0.020 4.020 18 C -0.164 4.164 19 N -0.133 5.133 20 N 0.025 4.975 21 N -0.119 5.119 22 H 0.324 0.676 23 C -0.042 4.042 24 N -0.167 5.167 25 C -0.162 4.162 26 C -0.145 4.145 27 C -0.149 4.149 28 C -0.151 4.151 29 C -0.151 4.151 30 H 0.058 0.942 31 H 0.209 0.791 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.245 0.755 35 H 0.196 0.804 36 H 0.212 0.788 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.422 -17.588 -6.291 19.450 hybrid contribution 0.205 1.591 0.613 1.718 sum -5.218 -15.996 -5.678 17.758 Atomic orbital electron populations 1.69783 1.06257 1.25781 1.59815 1.25392 0.96327 1.00487 1.04015 0.85325 0.77326 0.79786 0.78039 1.21042 1.22078 1.20354 1.19522 0.91198 0.85620 1.40777 0.91574 1.42308 1.05407 1.00454 1.89115 1.21199 0.94295 0.85334 0.97836 1.20596 0.90889 0.94466 0.84629 1.45739 1.12178 1.70184 1.04651 1.17805 0.86686 0.76820 0.83053 1.90727 1.13991 1.50779 1.86382 1.21339 0.87803 0.97007 0.95140 1.21910 1.03680 0.98832 0.90105 1.20872 0.87398 0.91894 1.01822 1.21001 0.96918 1.07557 0.90922 1.75376 0.94143 1.18623 1.25203 1.78023 1.20778 1.11278 0.87419 1.44677 1.05079 1.54030 1.08079 0.67550 1.19961 0.86961 1.05242 0.92008 1.66203 1.04142 1.13783 1.32531 1.21851 0.98426 0.92595 1.03348 1.21422 0.97303 0.97466 0.98335 1.21516 0.98565 0.96910 0.97954 1.21524 0.97309 0.94001 1.02277 1.21713 0.98094 0.99221 0.96112 0.94228 0.79148 0.96036 0.95651 0.75455 0.80407 0.78802 0.91329 0.90129 0.93224 0.90808 0.91146 0.90711 0.90523 0.92252 0.89906 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.78 13.06 21.65 0.28 -58.49 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.73 -37.06 5.19 -343.46 -1.78 -38.84 16 10 C 0.14 5.87 4.93 86.38 0.43 6.30 16 11 C 0.18 5.65 0.32 3.61 0.00 5.66 16 12 N -0.68 -21.41 3.47 -425.49 -1.48 -22.88 16 13 C 0.57 19.09 7.14 86.87 0.62 19.71 16 14 O -0.54 -20.29 12.58 -3.78 -0.05 -20.34 16 15 C 0.14 4.09 6.74 42.05 0.28 4.37 16 16 C -0.12 -2.84 9.55 22.35 0.21 -2.63 16 17 C 0.01 0.21 10.16 22.35 0.23 0.44 16 18 C -0.04 -0.90 7.38 39.83 0.29 -0.61 16 19 N -0.26 -6.52 12.43 -52.29 -0.65 -7.17 16 20 N 0.01 0.20 13.28 37.02 0.49 0.69 16 21 N -0.38 -7.73 7.06 -55.41 -0.39 -8.12 16 22 H 0.47 6.06 8.96 -219.83 -1.97 4.09 16 23 C 0.20 5.15 8.56 134.30 1.15 6.30 16 24 N -0.45 -12.46 9.55 -182.08 -1.74 -14.20 16 25 C -0.12 -3.27 4.45 30.60 0.14 -3.14 16 26 C -0.11 -2.25 5.76 30.59 0.18 -2.07 16 27 C -0.11 -2.00 5.92 30.59 0.18 -1.82 16 28 C -0.11 -2.37 5.75 30.59 0.18 -2.19 16 29 C -0.11 -3.16 4.64 30.60 0.14 -3.02 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.38 19.79 6.45 -92.71 -0.60 19.19 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.03 1.18 6.45 -2.38 -0.02 1.16 16 34 H 0.41 12.42 6.80 -92.71 -0.63 11.79 16 35 H 0.18 3.68 7.61 -2.91 -0.02 3.66 16 36 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.07 2.10 6.04 -2.39 -0.01 2.09 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.13 7.54 -2.39 -0.02 1.11 16 40 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.26 6.95 -2.39 -0.02 1.24 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.05 1.75 7.09 -2.39 -0.02 1.73 16 Total: -1.00 -72.04 369.38 -0.08 -72.12 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -2.13 Total: 37.22 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 5.33 Total: 10.89 kcal Atomic # 7 Polarization: -143.76 SS G_CDS: -5.26 Total: -149.02 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.34 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -72.04 -0.08 -72.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282606645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.854 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds