Wall clock time and date at job start Wed Apr 1 2020 04:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47411 * 270.00053 * 3 2 1 5 5 H 1.48495 * 109.47135 * 30.00602 * 3 2 1 6 6 H 1.48500 * 109.47061 * 150.00704 * 3 2 1 7 7 C 1.38815 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00140 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47624 * 175.04398 * 10 9 7 12 12 N 1.46504 * 109.46510 * 305.42718 * 11 10 9 13 13 C 1.34773 * 120.00023 * 303.82916 * 12 11 10 14 14 O 1.21573 * 119.99875 * 354.86198 * 13 12 11 15 15 C 1.47725 * 120.00334 * 174.57997 * 13 12 11 16 16 C 1.40115 * 120.34421 * 359.72520 * 15 13 12 17 17 N 1.31264 * 121.14795 * 179.74152 * 16 15 13 18 18 C 1.32719 * 121.79822 * 0.54772 * 17 16 15 19 19 N 1.37118 * 133.40603 * 179.72061 * 18 17 16 20 20 H 0.97000 * 126.59074 * 359.96786 * 19 18 17 21 21 N 1.40194 * 106.81589 * 179.97438 * 19 18 17 22 22 N 1.28665 * 109.51494 * 0.02562 * 21 19 18 23 23 C 1.35326 * 109.99681 * 359.97438 * 22 21 19 24 24 C 1.39428 * 120.35352 * 180.02562 * 15 13 12 25 25 C 1.53002 * 109.46804 * 65.41893 * 11 10 9 26 26 C 1.53000 * 109.46955 * 180.02562 * 25 11 10 27 27 C 1.53010 * 109.46927 * 300.00129 * 26 25 11 28 28 C 1.52999 * 109.46915 * 60.00308 * 27 26 25 29 29 C 1.52996 * 109.47541 * 185.42370 * 11 10 9 30 30 H 0.97000 * 119.99966 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99909 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47043 * 55.03939 * 10 9 7 33 33 H 1.09002 * 109.47160 * 295.04432 * 10 9 7 34 34 H 0.96998 * 119.99710 * 123.84381 * 12 11 10 35 35 H 1.08005 * 119.43169 * 0.02562 * 16 15 13 36 36 H 1.08002 * 120.95185 * 359.95340 * 24 15 13 37 37 H 1.09002 * 109.47564 * 300.00338 * 25 11 10 38 38 H 1.09000 * 109.47128 * 60.00646 * 25 11 10 39 39 H 1.08996 * 109.47003 * 180.02562 * 26 25 11 40 40 H 1.09000 * 109.47110 * 60.00102 * 26 25 11 41 41 H 1.09000 * 109.47204 * 299.99916 * 27 26 25 42 42 H 1.08998 * 109.46997 * 180.02562 * 27 26 25 43 43 H 1.09002 * 109.47070 * 180.02562 * 28 27 26 44 44 H 1.09000 * 109.47505 * 59.99792 * 28 27 26 45 45 H 1.09000 * 109.47007 * 300.00312 * 29 11 10 46 46 H 1.09001 * 109.46832 * 59.99607 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0685 -4.8171 0.1241 12 7 0.2292 -4.6179 1.3083 13 6 0.7990 -4.4620 2.5196 14 8 2.0026 -4.5796 2.6449 15 6 -0.0380 -4.1422 3.6941 16 6 -1.4244 -3.9936 3.5559 17 7 -2.1837 -3.7145 4.5896 18 6 -1.6772 -3.5500 5.8053 19 7 -2.2307 -3.2558 7.0247 20 1 -3.1706 -3.1061 7.2121 21 7 -1.1772 -3.2128 7.9486 22 7 -0.0672 -3.4597 7.3466 23 6 -0.2932 -3.6769 6.0301 24 6 0.5439 -3.9788 4.9505 25 6 0.1851 -4.8702 -1.1240 26 6 -0.8048 -6.0301 -0.9991 27 6 -0.0349 -7.3453 -0.8629 28 6 0.8485 -7.2921 0.3852 29 6 1.8388 -6.1320 0.2601 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.7497 -3.6770 0.8417 33 1 2.6164 -3.7539 -0.9316 34 1 -0.7366 -4.5985 1.2204 35 1 -1.8768 -4.1154 2.5827 36 1 1.6102 -4.0833 5.0867 37 1 -0.3637 -3.9334 -1.2209 38 1 0.8095 -5.0183 -2.0051 39 1 -1.4339 -6.0682 -1.8885 40 1 -1.4292 -5.8816 -0.1181 41 1 0.5895 -7.4937 -1.7439 42 1 -0.7401 -8.1717 -0.7744 43 1 1.3973 -8.2288 0.4821 44 1 0.2241 -7.1436 1.2663 45 1 2.4633 -6.2800 -0.6209 46 1 2.4681 -6.0940 1.1492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282606980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:34 Heat of formation + Delta-G solvation = 95.820131 kcal Electronic energy + Delta-G solvation = -30997.320077 eV Core-core repulsion = 26924.118167 eV Total energy + Delta-G solvation = -4073.201910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.52362 -40.54174 -38.86655 -37.46415 -34.69066 -34.13516 -33.38723 -31.90747 -31.60534 -30.72496 -30.40934 -29.13778 -25.29191 -25.09828 -24.51612 -23.02569 -22.84887 -22.33647 -21.29805 -20.48445 -19.11794 -18.81572 -18.53219 -17.20925 -17.00684 -16.54999 -16.27382 -15.42154 -15.08964 -14.73569 -14.43357 -14.36977 -13.92946 -13.76328 -13.61253 -13.37873 -13.22752 -13.11392 -12.90828 -12.73846 -12.31412 -12.17933 -12.15277 -12.05790 -11.79064 -11.60397 -11.30155 -10.99646 -10.87638 -10.79108 -10.55284 -10.26238 -10.17643 -10.06570 -9.81746 -9.65669 -9.50327 -9.34067 -9.17592 -8.79121 -8.60199 -6.85255 -5.74671 -3.00390 0.03971 0.53292 1.80588 1.89354 2.86238 3.19485 3.45264 3.51244 3.52769 3.69719 3.71244 4.07243 4.11317 4.49593 4.54107 4.61805 4.77900 4.86702 4.90584 4.96330 5.15340 5.29484 5.31462 5.51532 5.57277 5.61298 5.62141 5.67200 5.70232 5.77428 5.83301 5.97151 6.08497 6.11939 6.20524 6.28026 6.29687 6.36668 6.45467 6.49172 6.56109 6.64548 6.88328 7.06755 7.28987 7.56721 7.74823 7.78238 8.45188 8.47580 9.57055 10.14354 10.49940 11.48435 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007241 B = 0.004791 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3866.042564 B = 5842.543022 C = 8544.133392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.229 4.229 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.139 3.861 11 C 0.179 3.821 12 N -0.701 5.701 13 C 0.580 3.420 14 O -0.522 6.522 15 C -0.194 4.194 16 C 0.219 3.781 17 N -0.489 5.489 18 C 0.293 3.707 19 N -0.485 5.485 20 H 0.453 0.547 21 N 0.012 4.988 22 N -0.191 5.191 23 C -0.074 4.074 24 C 0.082 3.918 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.114 4.114 29 C -0.128 4.128 30 H 0.253 0.747 31 H 0.381 0.619 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.393 0.607 35 H 0.177 0.823 36 H 0.166 0.834 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -15.570 5.183 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.210 4.210 3 Si 0.734 3.266 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.360 4.360 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.010 3.990 11 C 0.094 3.906 12 N -0.353 5.353 13 C 0.365 3.635 14 O -0.399 6.399 15 C -0.203 4.203 16 C 0.046 3.954 17 N -0.203 5.203 18 C 0.048 3.952 19 N -0.210 5.210 20 H 0.301 0.699 21 N 0.029 4.971 22 N -0.072 5.072 23 C -0.200 4.200 24 C 0.051 3.949 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.151 4.151 29 C -0.167 4.167 30 H 0.062 0.938 31 H 0.215 0.785 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.229 0.771 35 H 0.194 0.806 36 H 0.183 0.817 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.878 -15.190 6.719 17.619 hybrid contribution -0.530 1.135 -0.825 1.500 sum -6.408 -14.055 5.894 16.533 Atomic orbital electron populations 1.69630 1.04977 1.25389 1.58563 1.24648 0.95486 0.97420 1.03446 0.86242 0.78778 0.84111 0.77448 1.21826 1.21961 1.20830 1.19220 0.91026 0.84158 1.41610 0.91373 1.42210 1.05557 0.99716 1.89410 1.21121 0.93673 0.85067 0.99104 1.20605 0.91127 0.95342 0.83571 1.45768 1.09766 1.73314 1.06444 1.17429 0.87112 0.76755 0.82200 1.90734 1.14000 1.50185 1.84940 1.20889 0.95263 1.08937 0.95213 1.23062 0.89131 0.87092 0.96121 1.66677 1.39696 1.17730 0.96247 1.19582 0.90348 0.96984 0.88289 1.47479 1.11760 1.57888 1.03922 0.69939 1.81697 0.88252 1.15160 1.11961 1.74865 1.17676 1.10152 1.04549 1.20384 0.93459 1.13057 0.93054 1.21070 1.00990 0.85249 0.87606 1.21804 0.97984 0.99109 0.96953 1.21566 0.97853 0.94817 1.01490 1.21554 0.98516 0.97136 0.98425 1.21470 0.97769 0.98037 0.97862 1.21922 0.98122 0.93121 1.03515 0.93758 0.78482 0.93251 0.96166 0.77134 0.80587 0.81664 0.90091 0.90411 0.91884 0.92353 0.92072 0.92567 0.92510 0.92233 0.91350 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.46 13.06 55.49 0.72 -26.74 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.90 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.32 9.99 -15.06 -0.15 -6.47 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.33 5.18 -59.91 -0.31 -17.64 16 10 C 0.14 2.73 4.79 -4.04 -0.02 2.71 16 11 C 0.18 2.61 0.32 -131.82 -0.04 2.57 16 12 N -0.70 -9.58 3.52 -48.57 -0.17 -9.75 16 13 C 0.58 8.98 7.18 -12.39 -0.09 8.89 16 14 O -0.52 -9.58 12.69 5.30 0.07 -9.51 16 15 C -0.19 -2.68 5.88 -104.87 -0.62 -3.30 16 16 C 0.22 2.66 10.69 -17.09 -0.18 2.48 16 17 N -0.49 -6.31 10.37 -12.03 -0.12 -6.43 16 18 C 0.29 3.86 8.49 -155.92 -1.32 2.54 16 19 N -0.49 -5.28 7.53 31.15 0.23 -5.05 16 20 H 0.45 3.22 8.96 -182.53 -1.64 1.59 16 21 N 0.01 0.16 13.82 60.35 0.83 0.99 16 22 N -0.19 -2.75 12.40 32.17 0.40 -2.35 16 23 C -0.07 -1.05 7.27 -84.74 -0.62 -1.67 16 24 C 0.08 1.14 9.75 -38.51 -0.38 0.77 16 25 C -0.12 -1.57 4.67 -26.73 -0.12 -1.69 16 26 C -0.12 -1.19 5.75 -26.73 -0.15 -1.34 16 27 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 28 C -0.11 -1.19 5.77 -26.71 -0.15 -1.35 16 29 C -0.13 -1.66 4.58 -26.71 -0.12 -1.78 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.38 9.27 6.46 -40.82 -0.26 9.01 16 32 H 0.05 1.09 6.25 -51.93 -0.32 0.77 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.39 4.41 5.26 -40.82 -0.21 4.20 16 35 H 0.18 1.62 6.40 -52.48 -0.34 1.28 16 36 H 0.17 2.21 7.71 -52.49 -0.40 1.81 16 37 H 0.08 1.23 7.11 -51.93 -0.37 0.86 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.53 6.78 -51.93 -0.35 0.17 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.64 7.60 -51.93 -0.39 0.24 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 1.26 6.28 -51.93 -0.33 0.94 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -33.31 367.96 -9.18 -42.49 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.13 Total: 10.26 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -4.23 Total: 0.57 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: 1.59 Total: -66.97 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.31 -9.18 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282606980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.310 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds