Wall clock time and date at job start Wed Apr 1 2020 04:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47411 * 270.00053 * 3 2 1 5 5 H 1.48495 * 109.47135 * 30.00602 * 3 2 1 6 6 H 1.48500 * 109.47061 * 150.00704 * 3 2 1 7 7 C 1.38815 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00140 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47624 * 175.04398 * 10 9 7 12 12 N 1.46504 * 109.46510 * 305.42718 * 11 10 9 13 13 C 1.34773 * 120.00023 * 303.82916 * 12 11 10 14 14 O 1.21573 * 119.99875 * 354.86198 * 13 12 11 15 15 C 1.47725 * 120.00334 * 174.57997 * 13 12 11 16 16 C 1.40115 * 120.34421 * 359.72520 * 15 13 12 17 17 N 1.31264 * 121.14795 * 179.74152 * 16 15 13 18 18 C 1.32719 * 121.79822 * 0.54772 * 17 16 15 19 19 N 1.37118 * 133.40603 * 179.72061 * 18 17 16 20 20 H 0.97000 * 126.59074 * 359.96786 * 19 18 17 21 21 N 1.40194 * 106.81589 * 179.97438 * 19 18 17 22 22 N 1.28665 * 109.51494 * 0.02562 * 21 19 18 23 23 C 1.35326 * 109.99681 * 359.97438 * 22 21 19 24 24 C 1.39428 * 120.35352 * 180.02562 * 15 13 12 25 25 C 1.53002 * 109.46804 * 65.41893 * 11 10 9 26 26 C 1.53000 * 109.46955 * 180.02562 * 25 11 10 27 27 C 1.53010 * 109.46927 * 300.00129 * 26 25 11 28 28 C 1.52999 * 109.46915 * 60.00308 * 27 26 25 29 29 C 1.52996 * 109.47541 * 185.42370 * 11 10 9 30 30 H 0.97000 * 119.99966 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99909 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47043 * 55.03939 * 10 9 7 33 33 H 1.09002 * 109.47160 * 295.04432 * 10 9 7 34 34 H 0.96998 * 119.99710 * 123.84381 * 12 11 10 35 35 H 1.08005 * 119.43169 * 0.02562 * 16 15 13 36 36 H 1.08002 * 120.95185 * 359.95340 * 24 15 13 37 37 H 1.09002 * 109.47564 * 300.00338 * 25 11 10 38 38 H 1.09000 * 109.47128 * 60.00646 * 25 11 10 39 39 H 1.08996 * 109.47003 * 180.02562 * 26 25 11 40 40 H 1.09000 * 109.47110 * 60.00102 * 26 25 11 41 41 H 1.09000 * 109.47204 * 299.99916 * 27 26 25 42 42 H 1.08998 * 109.46997 * 180.02562 * 27 26 25 43 43 H 1.09002 * 109.47070 * 180.02562 * 28 27 26 44 44 H 1.09000 * 109.47505 * 59.99792 * 28 27 26 45 45 H 1.09000 * 109.47007 * 300.00312 * 29 11 10 46 46 H 1.09001 * 109.46832 * 59.99607 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0685 -4.8171 0.1241 12 7 0.2292 -4.6179 1.3083 13 6 0.7990 -4.4620 2.5196 14 8 2.0026 -4.5796 2.6449 15 6 -0.0380 -4.1422 3.6941 16 6 -1.4244 -3.9936 3.5559 17 7 -2.1837 -3.7145 4.5896 18 6 -1.6772 -3.5500 5.8053 19 7 -2.2307 -3.2558 7.0247 20 1 -3.1706 -3.1061 7.2121 21 7 -1.1772 -3.2128 7.9486 22 7 -0.0672 -3.4597 7.3466 23 6 -0.2932 -3.6769 6.0301 24 6 0.5439 -3.9788 4.9505 25 6 0.1851 -4.8702 -1.1240 26 6 -0.8048 -6.0301 -0.9991 27 6 -0.0349 -7.3453 -0.8629 28 6 0.8485 -7.2921 0.3852 29 6 1.8388 -6.1320 0.2601 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.7497 -3.6770 0.8417 33 1 2.6164 -3.7539 -0.9316 34 1 -0.7366 -4.5985 1.2204 35 1 -1.8768 -4.1154 2.5827 36 1 1.6102 -4.0833 5.0867 37 1 -0.3637 -3.9334 -1.2209 38 1 0.8095 -5.0183 -2.0051 39 1 -1.4339 -6.0682 -1.8885 40 1 -1.4292 -5.8816 -0.1181 41 1 0.5895 -7.4937 -1.7439 42 1 -0.7401 -8.1717 -0.7744 43 1 1.3973 -8.2288 0.4821 44 1 0.2241 -7.1436 1.2663 45 1 2.4633 -6.2800 -0.6209 46 1 2.4681 -6.0940 1.1492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282606980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:33 Heat of formation + Delta-G solvation = 72.749229 kcal Electronic energy + Delta-G solvation = -30998.320506 eV Core-core repulsion = 26924.118167 eV Total energy + Delta-G solvation = -4074.202340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.55581 -41.72565 -39.91683 -38.61187 -36.34407 -35.18153 -34.73866 -33.31849 -32.84418 -31.88088 -31.56902 -30.47352 -26.97411 -26.15512 -25.58609 -24.63419 -23.88490 -23.43308 -22.47601 -21.60983 -20.19314 -19.83691 -19.67219 -19.19796 -18.06665 -17.63186 -17.30850 -16.75273 -16.52050 -16.06173 -15.86814 -15.55912 -15.17339 -14.94029 -14.85868 -14.67028 -14.49625 -14.33761 -14.13568 -13.80904 -13.74914 -13.39683 -13.19177 -13.10846 -12.96538 -12.84307 -12.75232 -12.64819 -12.50843 -12.08709 -11.91969 -11.84624 -11.44312 -11.31211 -11.07295 -10.93802 -10.87111 -10.53385 -10.44015 -10.26319 -9.82700 -8.88791 -7.92366 -5.16212 -0.99447 -0.54527 0.84120 0.87238 1.45280 1.46055 1.53791 1.70978 2.06031 2.56494 2.58586 2.69595 3.03400 3.07841 3.40954 3.45141 3.56051 3.69720 3.84210 3.93476 3.96444 4.12946 4.17956 4.33316 4.47094 4.54646 4.56731 4.67484 4.69198 4.70847 4.87109 4.91644 4.96127 4.97994 5.19561 5.24691 5.29808 5.34045 5.38769 5.45890 5.51689 5.57539 5.60860 5.64436 5.76304 6.27433 6.31155 6.54094 6.63648 7.29320 7.39626 8.14899 8.43837 9.30170 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007241 B = 0.004791 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3866.042564 B = 5842.543022 C = 8544.133392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.065 4.065 3 Si 0.958 3.042 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.061 0.939 9 N -0.726 5.726 10 C 0.138 3.862 11 C 0.187 3.813 12 N -0.691 5.691 13 C 0.576 3.424 14 O -0.557 6.557 15 C -0.200 4.200 16 C 0.226 3.774 17 N -0.488 5.488 18 C 0.287 3.713 19 N -0.463 5.463 20 H 0.469 0.531 21 N 0.014 4.986 22 N -0.212 5.212 23 C -0.088 4.088 24 C 0.075 3.925 25 C -0.114 4.114 26 C -0.114 4.114 27 C -0.114 4.114 28 C -0.108 4.108 29 C -0.123 4.123 30 H 0.249 0.751 31 H 0.379 0.621 32 H 0.024 0.976 33 H 0.018 0.982 34 H 0.407 0.593 35 H 0.207 0.793 36 H 0.162 0.838 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -16.737 4.686 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.079 0.921 9 N -0.370 5.370 10 C 0.011 3.989 11 C 0.101 3.899 12 N -0.343 5.343 13 C 0.363 3.637 14 O -0.436 6.436 15 C -0.209 4.209 16 C 0.052 3.948 17 N -0.202 5.202 18 C 0.042 3.958 19 N -0.191 5.191 20 H 0.321 0.679 21 N 0.031 4.969 22 N -0.093 5.093 23 C -0.213 4.213 24 C 0.044 3.956 25 C -0.152 4.152 26 C -0.152 4.152 27 C -0.151 4.151 28 C -0.146 4.146 29 C -0.162 4.162 30 H 0.058 0.942 31 H 0.213 0.787 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.245 0.755 35 H 0.224 0.776 36 H 0.180 0.820 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.565 -16.379 6.229 19.087 hybrid contribution 0.031 1.489 -0.650 1.625 sum -7.533 -14.891 5.579 17.596 Atomic orbital electron populations 1.69741 1.05872 1.25629 1.59768 1.25272 0.96325 1.00021 1.04156 0.85365 0.77671 0.80691 0.77430 1.21257 1.22284 1.20559 1.19480 0.91022 0.85743 1.40628 0.92108 1.42249 1.05502 1.00170 1.89033 1.21188 0.94534 0.85525 0.97668 1.20465 0.90754 0.93915 0.84776 1.45669 1.10453 1.72509 1.05672 1.17709 0.86859 0.76186 0.82962 1.90724 1.15572 1.51774 1.85532 1.20801 0.95932 1.09797 0.94393 1.23498 0.88338 0.85819 0.97133 1.66799 1.39409 1.17880 0.96120 1.19742 0.90175 0.96978 0.88930 1.47459 1.12355 1.56466 1.02871 0.67876 1.81634 0.88393 1.14708 1.12174 1.74865 1.18399 1.11268 1.04803 1.20482 0.94101 1.13657 0.93068 1.21114 1.01060 0.85393 0.87986 1.21732 0.98144 0.99631 0.95738 1.21557 0.97217 0.93542 1.02845 1.21532 0.98599 0.97327 0.97662 1.21437 0.97355 0.97062 0.98701 1.21849 0.98440 0.93241 1.02622 0.94186 0.78728 0.95797 0.96438 0.75504 0.77615 0.82037 0.92355 0.90473 0.90437 0.91088 0.91772 0.90471 0.91411 0.92207 0.90866 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.37 13.06 21.65 0.28 -56.09 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 3 Si 0.96 46.75 29.55 68.60 2.03 48.78 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 8 H 0.06 3.43 7.83 -2.91 -0.02 3.40 16 9 N -0.73 -35.23 5.18 -343.46 -1.78 -37.01 16 10 C 0.14 5.58 4.79 86.38 0.41 5.99 16 11 C 0.19 5.36 0.32 3.60 0.00 5.37 16 12 N -0.69 -18.38 3.52 -425.86 -1.50 -19.88 16 13 C 0.58 17.95 7.18 86.75 0.62 18.57 16 14 O -0.56 -21.17 12.69 -3.95 -0.05 -21.22 16 15 C -0.20 -5.47 5.88 -20.03 -0.12 -5.59 16 16 C 0.23 5.12 10.69 85.23 0.91 6.03 16 17 N -0.49 -11.72 10.37 -191.97 -1.99 -13.71 16 18 C 0.29 7.22 8.49 134.01 1.14 8.36 16 19 N -0.46 -9.38 7.53 -55.37 -0.42 -9.80 16 20 H 0.47 5.74 8.96 -213.26 -1.91 3.82 16 21 N 0.01 0.35 13.82 37.02 0.51 0.86 16 22 N -0.21 -6.07 12.40 -52.14 -0.65 -6.72 16 23 C -0.09 -2.46 7.27 39.63 0.29 -2.18 16 24 C 0.08 2.14 9.75 22.96 0.22 2.36 16 25 C -0.11 -2.82 4.67 30.59 0.14 -2.67 16 26 C -0.11 -1.91 5.75 30.60 0.18 -1.74 16 27 C -0.11 -1.73 5.92 30.60 0.18 -1.55 16 28 C -0.11 -2.01 5.77 30.61 0.18 -1.83 16 29 C -0.12 -3.09 4.58 30.61 0.14 -2.95 16 30 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.38 18.57 6.46 -92.71 -0.60 17.97 16 32 H 0.02 1.10 6.25 -2.38 -0.01 1.09 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.41 8.38 5.26 -92.71 -0.49 7.90 16 35 H 0.21 3.24 6.40 -2.91 -0.02 3.22 16 36 H 0.16 4.58 7.71 -2.91 -0.02 4.56 16 37 H 0.06 1.72 7.11 -2.39 -0.02 1.70 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.02 6.78 -2.39 -0.02 1.01 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 1.13 7.60 -2.39 -0.02 1.11 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.85 6.28 -2.39 -0.01 1.84 16 Total: -1.00 -72.12 367.96 0.11 -72.00 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -1.93 Total: 30.24 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 5.60 Total: 12.55 kcal Atomic # 7 Polarization: -136.81 SS G_CDS: -5.54 Total: -142.35 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -72.12 0.11 -72.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282606980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.753 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds