Wall clock time and date at job start Wed Apr 1 2020 03:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47104 * 2 1 4 4 F 1.39902 * 109.47134 * 239.99592 * 2 1 3 5 5 C 1.53003 * 109.47092 * 119.99888 * 2 1 3 6 6 C 1.52993 * 109.47207 * 184.99665 * 5 2 1 7 7 N 1.46900 * 109.47231 * 179.97438 * 6 5 2 8 8 C 1.47173 * 111.00278 * 293.95817 * 7 6 5 9 9 C 1.52868 * 108.20309 * 171.11992 * 8 7 6 10 10 C 1.51197 * 111.24107 * 58.59482 * 9 8 7 11 11 H 1.09002 * 110.17045 * 186.51363 * 10 9 8 12 12 C 1.54243 * 112.16808 * 63.77083 * 10 9 8 13 13 N 1.47877 * 103.87643 * 199.25464 * 12 10 9 14 14 C 1.34778 * 125.74453 * 204.54856 * 13 12 10 15 15 O 1.21270 * 119.99803 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99751 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47057 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00009 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00019 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00155 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99769 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46826 * 60.00176 * 22 20 18 24 24 H 1.48497 * 109.47170 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47130 * 300.00154 * 22 20 18 26 26 C 1.47347 * 108.50895 * 24.56877 * 13 12 10 27 27 C 1.54428 * 112.76010 * 309.67432 * 10 9 8 28 28 H 1.08994 * 112.32398 * 280.06748 * 27 10 9 29 29 C 1.46453 * 110.99944 * 171.14463 * 7 6 5 30 30 H 1.09000 * 109.47136 * 300.00106 * 1 2 3 31 31 H 1.09001 * 109.46922 * 60.00045 * 1 2 3 32 32 H 1.09006 * 109.47554 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47089 * 64.99836 * 5 2 1 34 34 H 1.08998 * 109.47085 * 305.00207 * 5 2 1 35 35 H 1.09004 * 109.46956 * 60.00091 * 6 5 2 36 36 H 1.08998 * 109.47541 * 300.00264 * 6 5 2 37 37 H 1.09001 * 109.71440 * 51.44562 * 8 7 6 38 38 H 1.09003 * 109.74921 * 290.81915 * 8 7 6 39 39 H 1.09002 * 109.12795 * 298.14170 * 9 8 7 40 40 H 1.08999 * 109.08008 * 179.01408 * 9 8 7 41 41 H 1.09005 * 110.54620 * 80.65503 * 12 10 9 42 42 H 1.08999 * 110.66815 * 317.91084 * 12 10 9 43 43 H 1.09001 * 109.46743 * 299.99956 * 16 14 13 44 44 H 1.09002 * 109.47546 * 59.99555 * 16 14 13 45 45 H 0.97002 * 120.00163 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.99671 * 241.43485 * 26 13 12 47 47 H 1.09001 * 109.99370 * 120.10378 * 26 13 12 48 48 H 1.08999 * 109.16647 * 66.78622 * 29 7 6 49 49 H 1.08993 * 109.16676 * 307.58554 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2493 6 6 3.5647 -0.6134 1.3137 7 7 4.0544 -1.3053 2.5135 8 6 3.6030 -0.6231 3.7370 9 6 3.9528 -1.5077 4.9336 10 6 5.4390 -1.7779 4.9992 11 1 5.6553 -2.5001 5.7865 12 6 6.2551 -0.4897 5.2306 13 7 7.6213 -0.8526 4.7964 14 6 8.7615 -0.2671 5.2132 15 8 8.7184 0.6426 6.0140 16 6 10.0898 -0.7421 4.6832 17 16 11.4203 0.2337 5.4274 18 6 12.8165 -0.5127 4.6542 19 1 12.6771 -1.3237 3.9547 20 6 14.0956 -0.0585 4.9441 21 7 14.2655 0.9302 5.7962 22 14 15.5760 -0.8504 4.1249 23 1 15.4666 -0.6984 2.6518 24 1 16.8175 -0.1881 4.5995 25 1 15.6206 -2.2936 4.4718 26 6 7.5262 -1.9618 3.8311 27 6 6.0154 -2.2766 3.6562 28 1 5.8273 -3.3378 3.4934 29 6 5.5154 -1.4051 2.5023 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7516 -1.7715 1.2056 34 1 1.6053 -0.2617 2.1370 35 1 3.8531 0.4369 1.3573 36 1 3.9994 -1.0729 0.4260 37 1 2.5247 -0.4696 3.6959 38 1 4.1081 0.3384 3.8302 39 1 3.4212 -2.4551 4.8450 40 1 3.6401 -1.0073 5.8501 41 1 6.2488 -0.2172 6.2860 42 1 5.8651 0.3271 4.6233 43 1 10.2264 -1.7938 4.9352 44 1 10.1128 -0.6222 3.6000 45 1 15.1595 1.2474 5.9991 46 1 8.0471 -2.8379 4.2175 47 1 7.9576 -1.6625 2.8759 48 1 5.9430 -0.4069 2.5966 49 1 5.8370 -1.8433 1.5575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316746414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:51 Heat of formation + Delta-G solvation = -90.492713 kcal Electronic energy + Delta-G solvation = -27956.943922 eV Core-core repulsion = 23958.894119 eV Total energy + Delta-G solvation = -3998.049803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.99911 -40.84533 -38.67624 -36.80934 -34.45564 -32.94175 -32.42821 -31.55759 -29.93709 -28.95483 -27.48016 -25.52462 -25.06038 -24.31805 -22.56298 -22.24247 -21.16280 -19.33434 -19.01474 -17.66116 -17.08016 -16.80982 -16.55545 -16.22624 -15.62499 -15.46071 -15.17036 -14.81319 -14.76056 -14.59516 -14.43974 -14.03583 -13.68924 -13.52980 -13.43197 -13.25206 -12.95858 -12.79263 -12.62629 -12.49302 -12.46721 -12.17840 -11.93686 -11.75763 -11.57679 -11.49143 -11.27182 -11.10900 -11.04287 -11.03760 -10.90785 -10.75588 -10.59035 -10.47501 -9.82171 -9.40013 -9.05736 -8.72212 -8.45572 -8.23754 -6.50263 -6.21238 -3.92093 2.91293 3.06996 3.23648 3.25932 3.29301 3.37537 3.61985 4.12689 4.16083 4.20445 4.23099 4.28979 4.36228 4.44074 4.47738 4.73411 4.75401 4.85075 4.95292 5.00704 5.01664 5.08520 5.11345 5.13476 5.13779 5.21581 5.30765 5.34868 5.39017 5.47133 5.50311 5.52683 5.54294 5.64413 5.66829 5.70289 5.73467 5.77766 5.85945 5.92064 5.97438 6.03728 6.14240 6.40717 6.68762 6.70544 7.59362 7.68268 8.35264 8.56240 9.23769 10.86143 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.001978 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.719091 B =14153.147466 C =14943.877409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.081 0.919 4 F -0.214 7.214 5 C -0.143 4.143 6 C 0.052 3.948 7 N -0.530 5.530 8 C 0.045 3.955 9 C -0.101 4.101 10 C -0.097 4.097 11 H 0.085 0.915 12 C 0.111 3.889 13 N -0.627 5.627 14 C 0.548 3.452 15 O -0.517 6.517 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.103 3.897 27 C -0.085 4.085 28 H 0.103 0.897 29 C 0.058 3.942 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.048 -6.252 -9.126 31.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.099 0.901 4 F -0.195 7.195 5 C -0.181 4.181 6 C -0.076 4.076 7 N -0.254 5.254 8 C -0.083 4.083 9 C -0.139 4.139 10 C -0.116 4.116 11 H 0.103 0.897 12 C -0.012 4.012 13 N -0.365 5.365 14 C 0.337 3.663 15 O -0.391 6.391 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.021 4.021 27 C -0.105 4.105 28 H 0.122 0.878 29 C -0.070 4.070 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -29.057 -5.220 -7.841 30.546 hybrid contribution 1.438 -0.774 -1.577 2.270 sum -27.620 -5.994 -9.418 29.790 Atomic orbital electron populations 1.22368 0.94219 1.03683 1.03441 1.21567 0.94859 0.96231 0.82268 0.90088 1.92827 1.90264 1.83355 1.53068 1.22227 0.95930 1.02731 0.97166 1.22107 0.94891 0.96971 0.93671 1.62229 1.10508 1.50974 1.01715 1.22313 1.00479 0.95592 0.89877 1.20981 0.94603 1.00891 0.97449 1.21740 0.94881 0.97395 0.97619 0.89685 1.22221 0.81615 0.96480 1.00870 1.48668 1.05678 1.36558 1.45597 1.20024 0.83920 0.81620 0.80732 1.90702 1.86395 1.28743 1.33293 1.23506 0.96525 1.05287 1.04377 1.85390 0.94297 1.45579 1.58171 1.22818 0.92336 1.22529 1.30695 0.90984 1.24990 0.98497 0.94963 0.95108 1.70008 1.23171 1.25023 1.32080 0.86224 0.80484 0.79295 0.79500 1.19938 1.20796 1.19920 1.22341 0.96355 0.90230 0.93194 1.22301 0.93236 1.00573 0.94344 0.87833 1.22139 0.87047 0.99000 0.98830 0.90681 0.91434 0.91297 0.89716 0.90050 0.94635 0.90107 0.90327 0.94227 0.90559 0.91147 0.90406 0.91955 0.89307 0.89389 0.92129 0.90998 0.91125 0.94181 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 9.65 37.16 0.36 -0.40 16 2 C 0.09 0.50 3.96 -26.73 -0.11 0.40 16 3 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 4 F -0.21 -1.89 16.76 2.25 0.04 -1.85 16 5 C -0.14 -0.80 4.93 -26.73 -0.13 -0.93 16 6 C 0.05 0.37 4.86 -3.83 -0.02 0.35 16 7 N -0.53 -4.15 4.69 -234.86 -1.10 -5.25 16 8 C 0.05 0.32 5.17 -3.74 -0.02 0.30 16 9 C -0.10 -0.71 5.56 -27.71 -0.15 -0.87 16 10 C -0.10 -0.86 3.06 -90.13 -0.28 -1.13 16 11 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 12 C 0.11 1.35 5.80 -2.64 -0.02 1.33 16 13 N -0.63 -9.23 3.34 -169.68 -0.57 -9.80 16 14 C 0.55 10.84 7.87 -10.98 -0.09 10.76 16 15 O -0.52 -12.27 16.13 5.57 0.09 -12.18 16 16 C -0.15 -3.07 5.36 36.01 0.19 -2.87 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.10 1.13 5.80 -2.35 -0.01 1.11 16 27 C -0.09 -0.73 3.75 -88.64 -0.33 -1.07 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 C 0.06 0.50 4.18 -4.07 -0.02 0.48 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.37 6.39 -51.93 -0.33 0.04 16 35 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 36 H 0.08 0.64 7.77 -51.93 -0.40 0.24 16 37 H 0.08 0.45 6.15 -51.93 -0.32 0.13 16 38 H 0.04 0.33 6.57 -51.93 -0.34 -0.02 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 42 H 0.06 0.75 5.76 -51.93 -0.30 0.45 16 43 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.76 7.77 -51.93 -0.40 0.35 16 48 H 0.04 0.42 6.88 -51.93 -0.36 0.06 16 49 H 0.08 0.64 7.98 -51.93 -0.41 0.22 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -34.60 395.79 -10.83 -45.42 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -8.33 Total: -3.70 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.42 Total: -5.62 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.93 Total: -40.64 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.60 -10.83 -45.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316746414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.071 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds