Wall clock time and date at job start Wed Apr 1 2020 03:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47104 * 2 1 4 4 F 1.39902 * 109.47134 * 239.99592 * 2 1 3 5 5 C 1.53003 * 109.47092 * 119.99888 * 2 1 3 6 6 C 1.52993 * 109.47207 * 184.99665 * 5 2 1 7 7 N 1.46900 * 109.47231 * 179.97438 * 6 5 2 8 8 C 1.47173 * 111.00278 * 293.95817 * 7 6 5 9 9 C 1.52868 * 108.20309 * 171.11992 * 8 7 6 10 10 C 1.51197 * 111.24107 * 58.59482 * 9 8 7 11 11 H 1.09002 * 110.17045 * 186.51363 * 10 9 8 12 12 C 1.54243 * 112.16808 * 63.77083 * 10 9 8 13 13 N 1.47877 * 103.87643 * 199.25464 * 12 10 9 14 14 C 1.34778 * 125.74453 * 204.54856 * 13 12 10 15 15 O 1.21270 * 119.99803 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99751 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47057 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00009 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00019 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00155 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99769 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46826 * 60.00176 * 22 20 18 24 24 H 1.48497 * 109.47170 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47130 * 300.00154 * 22 20 18 26 26 C 1.47347 * 108.50895 * 24.56877 * 13 12 10 27 27 C 1.54428 * 112.76010 * 309.67432 * 10 9 8 28 28 H 1.08994 * 112.32398 * 280.06748 * 27 10 9 29 29 C 1.46453 * 110.99944 * 171.14463 * 7 6 5 30 30 H 1.09000 * 109.47136 * 300.00106 * 1 2 3 31 31 H 1.09001 * 109.46922 * 60.00045 * 1 2 3 32 32 H 1.09006 * 109.47554 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47089 * 64.99836 * 5 2 1 34 34 H 1.08998 * 109.47085 * 305.00207 * 5 2 1 35 35 H 1.09004 * 109.46956 * 60.00091 * 6 5 2 36 36 H 1.08998 * 109.47541 * 300.00264 * 6 5 2 37 37 H 1.09001 * 109.71440 * 51.44562 * 8 7 6 38 38 H 1.09003 * 109.74921 * 290.81915 * 8 7 6 39 39 H 1.09002 * 109.12795 * 298.14170 * 9 8 7 40 40 H 1.08999 * 109.08008 * 179.01408 * 9 8 7 41 41 H 1.09005 * 110.54620 * 80.65503 * 12 10 9 42 42 H 1.08999 * 110.66815 * 317.91084 * 12 10 9 43 43 H 1.09001 * 109.46743 * 299.99956 * 16 14 13 44 44 H 1.09002 * 109.47546 * 59.99555 * 16 14 13 45 45 H 0.97002 * 120.00163 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.99671 * 241.43485 * 26 13 12 47 47 H 1.09001 * 109.99370 * 120.10378 * 26 13 12 48 48 H 1.08999 * 109.16647 * 66.78622 * 29 7 6 49 49 H 1.08993 * 109.16676 * 307.58554 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2493 6 6 3.5647 -0.6134 1.3137 7 7 4.0544 -1.3053 2.5135 8 6 3.6030 -0.6231 3.7370 9 6 3.9528 -1.5077 4.9336 10 6 5.4390 -1.7779 4.9992 11 1 5.6553 -2.5001 5.7865 12 6 6.2551 -0.4897 5.2306 13 7 7.6213 -0.8526 4.7964 14 6 8.7615 -0.2671 5.2132 15 8 8.7184 0.6426 6.0140 16 6 10.0898 -0.7421 4.6832 17 16 11.4203 0.2337 5.4274 18 6 12.8165 -0.5127 4.6542 19 1 12.6771 -1.3237 3.9547 20 6 14.0956 -0.0585 4.9441 21 7 14.2655 0.9302 5.7962 22 14 15.5760 -0.8504 4.1249 23 1 15.4666 -0.6984 2.6518 24 1 16.8175 -0.1881 4.5995 25 1 15.6206 -2.2936 4.4718 26 6 7.5262 -1.9618 3.8311 27 6 6.0154 -2.2766 3.6562 28 1 5.8273 -3.3378 3.4934 29 6 5.5154 -1.4051 2.5023 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7516 -1.7715 1.2056 34 1 1.6053 -0.2617 2.1370 35 1 3.8531 0.4369 1.3573 36 1 3.9994 -1.0729 0.4260 37 1 2.5247 -0.4696 3.6959 38 1 4.1081 0.3384 3.8302 39 1 3.4212 -2.4551 4.8450 40 1 3.6401 -1.0073 5.8501 41 1 6.2488 -0.2172 6.2860 42 1 5.8651 0.3271 4.6233 43 1 10.2264 -1.7938 4.9352 44 1 10.1128 -0.6222 3.6000 45 1 15.1595 1.2474 5.9991 46 1 8.0471 -2.8379 4.2175 47 1 7.9576 -1.6625 2.8759 48 1 5.9430 -0.4069 2.5966 49 1 5.8370 -1.8433 1.5575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316746414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:50 Heat of formation + Delta-G solvation = -112.568986 kcal Electronic energy + Delta-G solvation = -27957.901221 eV Core-core repulsion = 23958.894119 eV Total energy + Delta-G solvation = -3999.007102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.56725 -41.77654 -39.94024 -37.73917 -35.16353 -34.60677 -33.65302 -32.45348 -31.18089 -29.71137 -28.46097 -27.66981 -25.91333 -25.07314 -23.30920 -22.83151 -21.74129 -20.76775 -19.86902 -19.46176 -18.07104 -17.60080 -17.56507 -17.02512 -16.90113 -16.60128 -16.28922 -16.06838 -15.91031 -15.59535 -15.34579 -15.19998 -14.67287 -14.51912 -14.43385 -14.14812 -13.89540 -13.70694 -13.63115 -13.53419 -13.18137 -13.15652 -12.96953 -12.88014 -12.81164 -12.65309 -12.63963 -12.28651 -12.08570 -11.79801 -11.77829 -11.57159 -11.56236 -11.22673 -11.16777 -11.14552 -10.98712 -10.32107 -9.76465 -9.30635 -8.71010 -8.36316 -6.15713 1.21322 1.42947 1.43059 1.51441 1.53717 2.04849 2.25567 2.76616 2.97616 3.19165 3.41575 3.51105 3.71386 3.71704 3.80578 3.85353 3.88907 4.01406 4.05753 4.18390 4.20920 4.23165 4.33082 4.35243 4.39376 4.40357 4.51126 4.56460 4.60555 4.61223 4.68828 4.72234 4.82621 4.87119 4.93090 5.00040 5.04617 5.12076 5.19287 5.22179 5.23655 5.30225 5.31427 5.39264 5.41230 6.05372 6.10053 6.17573 6.34283 7.04332 7.06080 8.72777 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.001978 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.719091 B =14153.147466 C =14943.877409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 H 0.088 0.912 4 F -0.234 7.234 5 C -0.133 4.133 6 C 0.051 3.949 7 N -0.528 5.528 8 C 0.044 3.956 9 C -0.096 4.096 10 C -0.086 4.086 11 H 0.090 0.910 12 C 0.106 3.894 13 N -0.618 5.618 14 C 0.545 3.455 15 O -0.569 6.569 16 C -0.119 4.119 17 S -0.151 6.151 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.261 1.261 26 C 0.092 3.908 27 C -0.072 4.072 28 H 0.127 0.873 29 C 0.059 3.941 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.026 0.974 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.272 0.728 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.018 0.982 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.607 -8.509 -10.468 33.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.044 3.956 3 H 0.106 0.894 4 F -0.215 7.215 5 C -0.171 4.171 6 C -0.077 4.077 7 N -0.252 5.252 8 C -0.084 4.084 9 C -0.134 4.134 10 C -0.106 4.106 11 H 0.109 0.891 12 C -0.016 4.016 13 N -0.353 5.353 14 C 0.334 3.666 15 O -0.448 6.448 16 C -0.270 4.270 17 S 0.077 5.923 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.203 1.203 25 H -0.185 1.185 26 C -0.030 4.030 27 C -0.091 4.091 28 H 0.145 0.855 29 C -0.069 4.069 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.044 0.956 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.037 0.963 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -30.673 -7.516 -9.215 32.898 hybrid contribution 1.775 -0.073 -1.193 2.140 sum -28.899 -7.590 -10.407 31.639 Atomic orbital electron populations 1.22354 0.92917 1.03855 1.04272 1.21791 0.95946 0.96406 0.81480 0.89352 1.92788 1.90625 1.83802 1.54300 1.22151 0.94615 1.02626 0.97708 1.22115 0.96028 0.96462 0.93066 1.62277 1.09696 1.51073 1.02154 1.22379 1.01487 0.94890 0.89615 1.20977 0.92998 1.01649 0.97793 1.21728 0.95648 0.95267 0.97909 0.89138 1.22422 0.80626 0.98636 0.99884 1.48621 1.05270 1.36339 1.45027 1.19782 0.84821 0.81473 0.80545 1.90678 1.87159 1.31159 1.35786 1.23299 0.94630 1.04611 1.04496 1.85576 0.97952 1.48603 1.60209 1.23155 0.92688 1.22802 1.30885 0.89913 1.26150 1.02035 0.95368 0.95568 1.70178 1.24066 1.26725 1.33741 0.84990 0.75754 0.78539 0.78628 1.18645 1.20293 1.18548 1.22680 0.98704 0.89189 0.92433 1.22303 0.91020 1.01767 0.93966 0.85458 1.22104 0.87744 0.97897 0.99166 0.89008 0.91497 0.91443 0.90111 0.88481 0.95133 0.91112 0.88433 0.95621 0.89156 0.90258 0.91968 0.91923 0.87510 0.87787 0.91935 0.89758 0.90585 0.96338 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 9.65 71.98 0.69 -0.48 16 2 C 0.08 0.80 3.96 30.59 0.12 0.93 16 3 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 4 F -0.23 -3.95 16.76 44.97 0.75 -3.20 16 5 C -0.13 -1.23 4.93 30.59 0.15 -1.07 16 6 C 0.05 0.66 4.86 86.30 0.42 1.08 16 7 N -0.53 -7.09 4.69 -896.96 -4.20 -11.30 16 8 C 0.04 0.52 5.17 86.21 0.45 0.97 16 9 C -0.10 -1.07 5.56 29.96 0.17 -0.91 16 10 C -0.09 -1.33 3.06 -10.48 -0.03 -1.36 16 11 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 12 C 0.11 2.53 5.80 86.54 0.50 3.03 16 13 N -0.62 -17.82 3.34 -809.14 -2.70 -20.52 16 14 C 0.55 21.90 7.87 87.66 0.69 22.59 16 15 O -0.57 -28.16 16.13 -3.00 -0.05 -28.21 16 16 C -0.12 -5.01 5.36 71.24 0.38 -4.62 16 17 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 18 C -0.55 -31.74 9.50 67.95 0.65 -31.10 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 22 Si 1.00 43.87 29.55 68.60 2.03 45.89 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 C 0.09 1.84 5.80 87.01 0.50 2.35 16 27 C -0.07 -1.03 3.75 -9.51 -0.04 -1.07 16 28 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 29 C 0.06 0.91 4.18 86.39 0.36 1.28 16 30 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.59 6.39 -2.39 -0.02 0.57 16 35 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 36 H 0.07 1.06 7.77 -2.39 -0.02 1.04 16 37 H 0.10 0.81 6.15 -2.39 -0.01 0.80 16 38 H 0.03 0.39 6.57 -2.39 -0.02 0.37 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 1.69 8.05 -2.38 -0.02 1.67 16 42 H 0.06 1.51 5.76 -2.39 -0.01 1.50 16 43 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 44 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 45 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.08 1.48 7.77 -2.39 -0.02 1.46 16 48 H 0.02 0.37 6.88 -2.39 -0.02 0.35 16 49 H 0.08 1.20 7.98 -2.39 -0.02 1.18 16 Total: -1.00 -78.09 395.79 1.35 -76.73 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.92 Total: 13.73 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.48 Total: -7.15 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -6.62 Total: -88.04 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.05 Total: -28.21 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.75 Total: -3.20 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -78.09 1.35 -76.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316746414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.835 kcal (2) G-P(sol) polarization free energy of solvation -78.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds