Wall clock time and date at job start Wed Apr 1 2020 04:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48496 * 109.47164 * 240.00139 * 3 2 1 5 5 H 1.48510 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47403 * 119.99549 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00560 * 197.01470 * 7 2 1 9 9 N 1.36943 * 119.99782 * 17.00985 * 7 2 1 10 10 C 1.47078 * 120.88200 * 26.59378 * 9 7 2 11 11 C 1.53232 * 108.52568 * 128.79038 * 10 9 7 12 12 N 1.46898 * 109.34077 * 53.82710 * 11 10 9 13 13 C 1.46897 * 111.00639 * 172.74773 * 12 11 10 14 14 C 1.52994 * 109.47643 * 170.00553 * 13 12 11 15 15 N 1.46498 * 109.47212 * 180.02562 * 14 13 12 16 16 C 1.34778 * 119.99885 * 180.02562 * 15 14 13 17 17 O 1.21706 * 119.99951 * 359.97438 * 16 15 14 18 18 C 1.46677 * 120.00070 * 179.97438 * 16 15 14 19 19 C 1.40329 * 126.56075 * 0.02562 * 18 16 15 20 20 N 1.30991 * 108.78319 * 179.97438 * 19 18 16 21 21 N 1.39902 * 109.55870 * 0.02562 * 20 19 18 22 22 N 1.40022 * 132.52244 * 179.97438 * 21 20 19 23 23 C 1.30838 * 120.65990 * 179.97438 * 22 21 20 24 24 C 1.39728 * 120.97491 * 0.02562 * 23 22 21 25 25 C 1.36567 * 119.94158 * 0.02562 * 24 23 22 26 26 C 1.36763 * 107.86794 * 359.72572 * 21 20 19 27 27 C 1.46902 * 111.27254 * 296.90324 * 12 11 10 28 28 C 1.47074 * 120.88324 * 206.56687 * 9 7 2 29 29 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.62958 * 9.07883 * 10 9 7 31 31 H 1.09000 * 109.79200 * 248.59861 * 10 9 7 32 32 H 1.08998 * 109.49772 * 173.79199 * 11 10 9 33 33 H 1.09003 * 109.49624 * 293.87472 * 11 10 9 34 34 H 1.09004 * 109.47081 * 290.00913 * 13 12 11 35 35 H 1.09005 * 109.47028 * 49.99861 * 13 12 11 36 36 H 1.09000 * 109.46737 * 300.00112 * 14 13 12 37 37 H 1.09000 * 109.47052 * 59.99739 * 14 13 12 38 38 H 0.97002 * 120.00342 * 359.97438 * 15 14 13 39 39 H 1.08003 * 125.60666 * 359.96654 * 19 18 16 40 40 H 1.07992 * 119.50995 * 180.02562 * 23 22 21 41 41 H 1.07993 * 120.03145 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.44304 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.48602 * 303.13975 * 27 12 11 44 44 H 1.09000 * 109.49677 * 183.06378 * 27 12 11 45 45 H 1.09005 * 109.63035 * 350.91919 * 28 9 7 46 46 H 1.08997 * 109.62936 * 111.49710 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3459 10 6 0.2048 -2.3428 -1.2426 11 6 0.4409 -3.3533 -2.3700 12 7 0.7559 -4.6653 -1.7892 13 6 0.8201 -5.7001 -2.8298 14 6 1.3892 -6.9889 -2.2332 15 7 1.4538 -8.0206 -3.2713 16 6 1.9253 -9.2476 -2.9734 17 8 2.2979 -9.4983 -1.8422 18 6 1.9895 -10.2808 -4.0126 19 6 1.5996 -10.1430 -5.3535 20 7 1.8060 -11.2793 -5.9717 21 7 2.3367 -12.2114 -5.0735 22 7 2.7288 -13.5479 -5.2180 23 6 3.2064 -14.2168 -4.2001 24 6 3.3377 -13.6186 -2.9442 25 6 2.9642 -12.3170 -2.7668 26 6 2.4595 -11.5990 -3.8568 27 6 2.0032 -4.6197 -1.0145 28 6 1.8311 -3.6609 0.1684 29 1 -0.4850 0.8401 0.0004 30 1 0.0841 -1.3450 -1.6646 31 1 -0.6925 -2.6164 -0.6875 32 1 -0.4579 -3.4326 -2.9816 33 1 1.2741 -3.0201 -2.9887 34 1 -0.1815 -5.8898 -3.2160 35 1 1.4638 -5.3601 -3.6412 36 1 2.3907 -6.7992 -1.8472 37 1 0.7455 -7.3289 -1.4220 38 1 1.1565 -7.8210 -4.1728 39 1 1.1957 -9.2474 -5.8021 40 1 3.5035 -15.2466 -4.3325 41 1 3.7342 -14.1849 -2.1145 42 1 3.0618 -11.8467 -1.7995 43 1 2.8146 -4.2687 -1.6521 44 1 2.2375 -5.6173 -0.6431 45 1 2.7856 -3.5347 0.6793 46 1 1.0921 -4.0633 0.8613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316965248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:09 Heat of formation + Delta-G solvation = 149.614384 kcal Electronic energy + Delta-G solvation = -28769.310650 eV Core-core repulsion = 24698.441433 eV Total energy + Delta-G solvation = -4070.869216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -42.35570 -39.65404 -38.42835 -38.12801 -35.46635 -33.98002 -33.72894 -31.80077 -31.37873 -30.50892 -29.89660 -28.44561 -26.04756 -25.30794 -24.12832 -23.43136 -22.89828 -22.38706 -21.19885 -20.47399 -19.10684 -18.67887 -17.95291 -17.16129 -16.85645 -16.45759 -16.41690 -15.91902 -15.52278 -14.98771 -14.72435 -14.46375 -14.39252 -14.19647 -13.94345 -13.68397 -13.53896 -13.32075 -13.15757 -13.06247 -12.92939 -12.45814 -11.97148 -11.67202 -11.41966 -11.38236 -11.29636 -11.02156 -10.99610 -10.70484 -10.49548 -10.30040 -10.23900 -10.15609 -10.04492 -9.73083 -9.62062 -9.21298 -8.63833 -8.49368 -7.86676 -6.65587 -5.77074 -3.17983 -0.32342 0.43649 0.84798 1.63921 2.43959 2.93936 3.18887 3.39225 3.44892 3.46017 3.62793 3.80424 3.93964 4.00975 4.34004 4.42993 4.51987 4.55351 4.69227 4.78864 4.96648 5.13478 5.28675 5.36507 5.40087 5.43808 5.50638 5.51435 5.68435 5.83016 5.90805 5.93255 6.02266 6.14456 6.23280 6.25463 6.35934 6.53567 6.69520 6.74903 6.85523 6.94662 7.23618 7.32066 7.54771 7.63242 7.69434 7.81878 8.05693 8.44659 9.22499 9.85923 10.44421 11.31824 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.033070 B = 0.001707 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.482477 B =16401.218122 C =16815.648928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.178 3.822 11 C 0.037 3.963 12 N -0.528 5.528 13 C 0.043 3.957 14 C 0.118 3.882 15 N -0.722 5.722 16 C 0.597 3.403 17 O -0.546 6.546 18 C -0.268 4.268 19 C 0.096 3.904 20 N -0.252 5.252 21 N -0.173 5.173 22 N -0.216 5.216 23 C 0.119 3.881 24 C -0.158 4.158 25 C -0.025 4.025 26 C 0.108 3.892 27 C 0.034 3.966 28 C 0.148 3.852 29 H 0.254 0.746 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.398 0.602 39 H 0.208 0.792 40 H 0.209 0.791 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -27.796 -9.920 29.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.092 4.092 12 N -0.253 5.253 13 C -0.085 4.085 14 C -0.005 4.005 15 N -0.373 5.373 16 C 0.384 3.616 17 O -0.425 6.425 18 C -0.285 4.285 19 C -0.085 4.085 20 N -0.077 5.077 21 N -0.039 5.039 22 N -0.029 5.029 23 C -0.073 4.073 24 C -0.183 4.183 25 C -0.053 4.053 26 C -0.018 4.018 27 C -0.095 4.095 28 C 0.022 3.978 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.232 0.768 39 H 0.225 0.775 40 H 0.225 0.775 41 H 0.180 0.820 42 H 0.190 0.810 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.976 -28.635 -10.972 30.922 hybrid contribution 1.104 1.762 0.457 2.129 sum 5.080 -26.873 -10.515 29.301 Atomic orbital electron populations 1.70019 1.05181 1.25564 1.54069 1.25015 0.95311 0.98331 1.01082 0.86366 0.78889 0.83411 0.78079 1.21156 1.21621 1.20898 1.19157 0.92576 0.84800 1.41616 0.91689 1.44113 1.34109 1.01282 1.52364 1.20858 0.89049 0.96526 0.88416 1.22920 0.98695 0.88927 0.98696 1.62026 1.34424 1.05765 1.23097 1.22263 1.00538 0.91551 0.94192 1.21585 1.02250 0.86319 0.90380 1.45683 1.65814 1.11618 1.14203 1.16801 0.77108 0.81122 0.86558 1.90789 1.49248 1.80825 1.21605 1.19826 1.18593 0.94294 0.95775 1.24323 0.95840 0.96552 0.91752 1.77719 1.20551 0.97268 1.12131 1.50973 1.39952 1.06551 1.06458 1.75914 1.13812 0.86745 1.26394 1.24354 0.92660 1.00882 0.89442 1.21786 1.01866 0.95741 0.98891 1.21247 0.91821 0.93216 0.99016 1.19776 0.99843 0.93707 0.88524 1.22803 0.89679 0.99873 0.97158 1.20984 0.97838 0.86410 0.92609 0.93575 0.89301 0.95475 0.92028 0.95564 0.90569 0.94884 0.90727 0.90238 0.76819 0.77519 0.77494 0.82031 0.80999 0.95336 0.91206 0.92591 0.95549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 11.15 55.49 0.62 -25.59 16 2 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 3 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.95 9.63 -15.06 -0.15 -7.09 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.60 -15.09 3.04 -172.02 -0.52 -15.61 16 10 C 0.18 4.25 5.42 -3.61 -0.02 4.23 16 11 C 0.04 0.69 5.58 -3.71 -0.02 0.67 16 12 N -0.53 -9.02 4.78 -234.33 -1.12 -10.14 16 13 C 0.04 0.55 5.38 -3.83 -0.02 0.53 16 14 C 0.12 1.43 4.93 -4.05 -0.02 1.41 16 15 N -0.72 -7.23 5.55 -61.62 -0.34 -7.58 16 16 C 0.60 7.10 7.79 -12.85 -0.10 7.00 16 17 O -0.55 -8.14 15.77 5.18 0.08 -8.06 16 18 C -0.27 -2.83 6.16 -104.73 -0.65 -3.48 16 19 C 0.10 0.85 11.44 -17.12 -0.20 0.66 16 20 N -0.25 -2.88 12.61 30.75 0.39 -2.49 16 21 N -0.17 -1.94 5.25 32.44 0.17 -1.77 16 22 N -0.22 -1.96 11.96 30.59 0.37 -1.60 16 23 C 0.12 0.52 11.28 -17.42 -0.20 0.33 16 24 C -0.16 -0.65 10.04 -39.63 -0.40 -1.05 16 25 C -0.03 -0.19 9.75 -39.54 -0.39 -0.58 16 26 C 0.11 1.13 6.83 -84.05 -0.57 0.56 16 27 C 0.03 0.60 5.04 -3.70 -0.02 0.59 16 28 C 0.15 3.17 6.69 -3.61 -0.02 3.14 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 30 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.07 1.00 6.18 -51.93 -0.32 0.68 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.40 2.75 7.39 -40.82 -0.30 2.45 16 39 H 0.21 0.92 7.46 -52.48 -0.39 0.53 16 40 H 0.21 -0.10 8.06 -52.49 -0.42 -0.53 16 41 H 0.16 0.06 8.06 -52.49 -0.42 -0.36 16 42 H 0.17 1.29 7.18 -52.49 -0.38 0.92 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 1.09 5.73 -51.93 -0.30 0.79 16 45 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -36.47 377.26 -8.74 -45.21 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.19 Total: -1.59 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.85 Total: 6.87 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -0.44 Total: -64.77 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.47 -8.74 -45.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316965248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.825 kcal (2) G-P(sol) polarization free energy of solvation -36.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds