Wall clock time and date at job start Wed Apr 1 2020 04:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48496 * 109.47164 * 240.00139 * 3 2 1 5 5 H 1.48510 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47403 * 119.99549 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00560 * 197.01470 * 7 2 1 9 9 N 1.36943 * 119.99782 * 17.00985 * 7 2 1 10 10 C 1.47078 * 120.88200 * 26.59378 * 9 7 2 11 11 C 1.53232 * 108.52568 * 128.79038 * 10 9 7 12 12 N 1.46898 * 109.34077 * 53.82710 * 11 10 9 13 13 C 1.46897 * 111.00639 * 172.74773 * 12 11 10 14 14 C 1.52994 * 109.47643 * 170.00553 * 13 12 11 15 15 N 1.46498 * 109.47212 * 180.02562 * 14 13 12 16 16 C 1.34778 * 119.99885 * 180.02562 * 15 14 13 17 17 O 1.21706 * 119.99951 * 359.97438 * 16 15 14 18 18 C 1.46677 * 120.00070 * 179.97438 * 16 15 14 19 19 C 1.40329 * 126.56075 * 0.02562 * 18 16 15 20 20 N 1.30991 * 108.78319 * 179.97438 * 19 18 16 21 21 N 1.39902 * 109.55870 * 0.02562 * 20 19 18 22 22 N 1.40022 * 132.52244 * 179.97438 * 21 20 19 23 23 C 1.30838 * 120.65990 * 179.97438 * 22 21 20 24 24 C 1.39728 * 120.97491 * 0.02562 * 23 22 21 25 25 C 1.36567 * 119.94158 * 0.02562 * 24 23 22 26 26 C 1.36763 * 107.86794 * 359.72572 * 21 20 19 27 27 C 1.46902 * 111.27254 * 296.90324 * 12 11 10 28 28 C 1.47074 * 120.88324 * 206.56687 * 9 7 2 29 29 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.62958 * 9.07883 * 10 9 7 31 31 H 1.09000 * 109.79200 * 248.59861 * 10 9 7 32 32 H 1.08998 * 109.49772 * 173.79199 * 11 10 9 33 33 H 1.09003 * 109.49624 * 293.87472 * 11 10 9 34 34 H 1.09004 * 109.47081 * 290.00913 * 13 12 11 35 35 H 1.09005 * 109.47028 * 49.99861 * 13 12 11 36 36 H 1.09000 * 109.46737 * 300.00112 * 14 13 12 37 37 H 1.09000 * 109.47052 * 59.99739 * 14 13 12 38 38 H 0.97002 * 120.00342 * 359.97438 * 15 14 13 39 39 H 1.08003 * 125.60666 * 359.96654 * 19 18 16 40 40 H 1.07992 * 119.50995 * 180.02562 * 23 22 21 41 41 H 1.07993 * 120.03145 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.44304 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.48602 * 303.13975 * 27 12 11 44 44 H 1.09000 * 109.49677 * 183.06378 * 27 12 11 45 45 H 1.09005 * 109.63035 * 350.91919 * 28 9 7 46 46 H 1.08997 * 109.62936 * 111.49710 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3459 10 6 0.2048 -2.3428 -1.2426 11 6 0.4409 -3.3533 -2.3700 12 7 0.7559 -4.6653 -1.7892 13 6 0.8201 -5.7001 -2.8298 14 6 1.3892 -6.9889 -2.2332 15 7 1.4538 -8.0206 -3.2713 16 6 1.9253 -9.2476 -2.9734 17 8 2.2979 -9.4983 -1.8422 18 6 1.9895 -10.2808 -4.0126 19 6 1.5996 -10.1430 -5.3535 20 7 1.8060 -11.2793 -5.9717 21 7 2.3367 -12.2114 -5.0735 22 7 2.7288 -13.5479 -5.2180 23 6 3.2064 -14.2168 -4.2001 24 6 3.3377 -13.6186 -2.9442 25 6 2.9642 -12.3170 -2.7668 26 6 2.4595 -11.5990 -3.8568 27 6 2.0032 -4.6197 -1.0145 28 6 1.8311 -3.6609 0.1684 29 1 -0.4850 0.8401 0.0004 30 1 0.0841 -1.3450 -1.6646 31 1 -0.6925 -2.6164 -0.6875 32 1 -0.4579 -3.4326 -2.9816 33 1 1.2741 -3.0201 -2.9887 34 1 -0.1815 -5.8898 -3.2160 35 1 1.4638 -5.3601 -3.6412 36 1 2.3907 -6.7992 -1.8472 37 1 0.7455 -7.3289 -1.4220 38 1 1.1565 -7.8210 -4.1728 39 1 1.1957 -9.2474 -5.8021 40 1 3.5035 -15.2466 -4.3325 41 1 3.7342 -14.1849 -2.1145 42 1 3.0618 -11.8467 -1.7995 43 1 2.8146 -4.2687 -1.6521 44 1 2.2375 -5.6173 -0.6431 45 1 2.7856 -3.5347 0.6793 46 1 1.0921 -4.0633 0.8613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316965248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:08 Heat of formation + Delta-G solvation = 120.933258 kcal Electronic energy + Delta-G solvation = -28770.554357 eV Core-core repulsion = 24698.441433 eV Total energy + Delta-G solvation = -4072.112923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.98341 -40.58022 -39.68398 -38.88499 -36.85699 -35.37307 -34.29062 -33.28840 -32.35598 -31.84110 -31.03558 -29.70938 -27.61546 -25.84178 -25.38682 -24.60359 -24.07603 -23.54171 -22.46675 -21.30644 -20.77115 -19.36472 -18.72284 -18.47668 -17.82243 -17.25322 -17.11275 -16.87835 -16.71258 -16.49365 -15.93982 -15.70045 -15.43205 -15.31366 -15.19691 -15.02912 -14.84326 -14.53907 -14.37054 -14.03423 -13.62473 -13.60479 -13.13970 -12.99044 -12.93744 -12.63820 -12.56966 -12.38916 -12.32507 -12.01725 -11.95866 -11.88863 -11.55177 -11.48397 -11.42337 -11.05418 -10.86489 -10.56911 -10.15043 -9.30919 -9.26201 -8.66897 -7.86665 -5.31141 -0.85113 -0.08480 0.28350 0.94036 1.47492 1.49493 1.56604 1.92393 2.06466 2.39761 2.51767 3.04728 3.17699 3.28714 3.29789 3.42186 3.59070 3.69385 3.79772 3.87297 4.05010 4.10928 4.25537 4.29708 4.32745 4.36728 4.47926 4.59319 4.65404 4.72458 4.82620 4.86825 4.89442 4.96245 4.98543 5.05493 5.08393 5.15349 5.20920 5.37347 5.40386 5.61925 5.71192 6.12166 6.15328 6.24375 6.30529 6.38462 6.55612 7.14571 7.22130 7.85137 8.39259 9.19978 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.033070 B = 0.001707 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.482477 B =16401.218122 C =16815.648928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.614 5.614 10 C 0.183 3.817 11 C 0.053 3.947 12 N -0.540 5.540 13 C 0.051 3.949 14 C 0.129 3.871 15 N -0.709 5.709 16 C 0.599 3.401 17 O -0.584 6.584 18 C -0.298 4.298 19 C 0.111 3.889 20 N -0.294 5.294 21 N -0.190 5.190 22 N -0.257 5.257 23 C 0.134 3.866 24 C -0.119 4.119 25 C -0.064 4.064 26 C 0.101 3.899 27 C 0.048 3.952 28 C 0.142 3.858 29 H 0.251 0.749 30 H 0.058 0.942 31 H -0.001 1.001 32 H 0.087 0.913 33 H 0.023 0.977 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.415 0.585 39 H 0.244 0.756 40 H 0.262 0.738 41 H 0.209 0.791 42 H 0.167 0.833 43 H 0.025 0.975 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 -30.217 -10.919 32.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.338 5.338 10 C 0.057 3.943 11 C -0.076 4.076 12 N -0.265 5.265 13 C -0.077 4.077 14 C 0.005 3.995 15 N -0.361 5.361 16 C 0.388 3.612 17 O -0.465 6.465 18 C -0.315 4.315 19 C -0.070 4.070 20 N -0.118 5.118 21 N -0.055 5.055 22 N -0.070 5.070 23 C -0.057 4.057 24 C -0.144 4.144 25 C -0.092 4.092 26 C -0.027 4.027 27 C -0.081 4.081 28 C 0.017 3.983 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.017 0.983 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.252 0.748 39 H 0.260 0.740 40 H 0.277 0.723 41 H 0.226 0.774 42 H 0.185 0.815 43 H 0.044 0.956 44 H 0.112 0.888 45 H 0.076 0.924 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 5.197 -31.084 -12.018 33.730 hybrid contribution 0.782 2.263 0.857 2.543 sum 5.979 -28.822 -11.161 31.480 Atomic orbital electron populations 1.70182 1.06594 1.25942 1.55373 1.25788 0.96100 1.01451 1.01300 0.85321 0.77537 0.79167 0.78274 1.20455 1.21892 1.20217 1.19495 0.92876 0.86021 1.41164 0.91611 1.44403 1.34273 1.02053 1.53107 1.20648 0.87778 0.96538 0.89341 1.22582 0.99796 0.88654 0.96543 1.61916 1.34170 1.05679 1.24764 1.22260 1.02234 0.90053 0.93113 1.21309 1.01147 0.86503 0.90572 1.45457 1.65335 1.10644 1.14641 1.16980 0.76406 0.81565 0.86292 1.90758 1.51110 1.81527 1.23141 1.19759 1.21118 0.94429 0.96203 1.24862 0.94248 0.96936 0.90943 1.77594 1.22344 0.98222 1.13634 1.51132 1.40517 1.07356 1.06450 1.75937 1.15910 0.86283 1.28892 1.25375 0.89603 1.02313 0.88412 1.22373 0.97841 0.94195 0.99989 1.21402 0.94496 0.94955 0.98313 1.20222 0.99235 0.94052 0.89189 1.22589 0.89914 0.99850 0.95725 1.21134 0.97362 0.85665 0.94170 0.94029 0.92356 0.98317 0.89438 0.95862 0.88462 0.93414 0.91888 0.91592 0.74804 0.73998 0.72265 0.77385 0.81518 0.95645 0.88805 0.92353 0.96672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 11.15 21.65 0.24 -55.55 16 2 C -0.05 -2.88 4.94 84.86 0.42 -2.46 16 3 Si 0.97 45.17 29.59 68.60 2.03 47.20 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.27 -14.88 9.63 84.03 0.81 -14.07 16 8 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 9 N -0.61 -31.74 3.04 -698.16 -2.12 -33.86 16 10 C 0.18 8.97 5.42 86.35 0.47 9.44 16 11 C 0.05 1.97 5.58 86.38 0.48 2.46 16 12 N -0.54 -17.65 4.78 -895.28 -4.28 -21.93 16 13 C 0.05 1.17 5.38 86.30 0.46 1.64 16 14 C 0.13 2.92 4.93 86.38 0.43 3.35 16 15 N -0.71 -13.12 5.55 -467.08 -2.59 -15.71 16 16 C 0.60 14.06 7.79 86.45 0.67 14.74 16 17 O -0.58 -17.64 15.77 -4.37 -0.07 -17.70 16 18 C -0.30 -6.27 6.16 -19.94 -0.12 -6.39 16 19 C 0.11 1.90 11.44 85.33 0.98 2.87 16 20 N -0.29 -6.70 12.61 -56.63 -0.71 -7.42 16 21 N -0.19 -4.20 5.25 -51.28 -0.27 -4.47 16 22 N -0.26 -4.31 11.96 -57.12 -0.68 -5.00 16 23 C 0.13 0.72 11.28 85.20 0.96 1.68 16 24 C -0.12 -0.59 10.04 22.24 0.22 -0.36 16 25 C -0.06 -0.92 9.75 22.29 0.22 -0.71 16 26 C 0.10 2.11 6.83 39.42 0.27 2.38 16 27 C 0.05 1.66 5.04 86.38 0.44 2.10 16 28 C 0.14 6.14 6.69 86.35 0.58 6.72 16 29 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 30 H 0.06 3.19 6.12 -2.38 -0.01 3.18 16 31 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.09 2.78 8.11 -2.39 -0.02 2.76 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.05 1.01 8.08 -2.38 -0.02 0.99 16 36 H 0.06 1.60 6.18 -2.39 -0.01 1.59 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.41 4.73 7.39 -92.71 -0.69 4.05 16 39 H 0.24 1.69 7.46 -2.91 -0.02 1.67 16 40 H 0.26 -1.67 8.06 -2.91 -0.02 -1.70 16 41 H 0.21 -0.97 8.06 -2.91 -0.02 -0.99 16 42 H 0.17 2.51 7.18 -2.91 -0.02 2.49 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 2.80 5.73 -2.39 -0.01 2.78 16 45 H 0.06 2.43 7.95 -2.38 -0.02 2.41 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -84.49 377.26 -0.84 -85.33 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.34 Total: 5.75 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 7.28 Total: 23.37 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -10.41 Total: -143.94 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.07 Total: -17.70 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -84.49 -0.84 -85.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316965248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.259 kcal (2) G-P(sol) polarization free energy of solvation -84.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds