Wall clock time and date at job start Wed Apr 1 2020 04:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46623 * 299.99493 * 3 2 1 6 6 H 1.48493 * 109.47366 * 59.99359 * 3 2 1 7 7 C 1.38813 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99800 * 197.03037 * 7 2 1 9 9 N 1.36932 * 120.00297 * 17.02974 * 7 2 1 10 10 C 1.47081 * 120.88310 * 206.58115 * 9 7 2 11 11 C 1.53237 * 108.52434 * 231.16144 * 10 9 7 12 12 N 1.46906 * 109.33760 * 306.17119 * 11 10 9 13 13 C 1.46896 * 110.99554 * 187.25038 * 12 11 10 14 14 C 1.53004 * 109.46916 * 170.00287 * 13 12 11 15 15 N 1.46501 * 109.47160 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99974 * 180.02562 * 15 14 13 17 17 O 1.21557 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.47880 * 119.99966 * 180.27197 * 16 15 14 19 19 C 1.39899 * 125.69046 * 179.43625 * 18 16 15 20 20 C 1.38583 * 107.58922 * 179.83822 * 19 18 16 21 21 N 1.34112 * 132.34162 * 180.09435 * 20 19 18 22 22 C 1.31125 * 120.84640 * 180.36295 * 21 20 19 23 23 C 1.40345 * 120.29475 * 359.97438 * 22 21 20 24 24 C 1.35454 * 119.46513 * 359.97438 * 23 22 21 25 25 N 1.36672 * 119.13953 * 0.02562 * 24 23 22 26 26 N 1.32368 * 125.69285 * 359.74886 * 18 16 15 27 27 C 1.46902 * 111.26665 * 63.10563 * 12 11 10 28 28 C 1.47083 * 120.87999 * 26.55737 * 9 7 2 29 29 H 0.96991 * 120.00282 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.62886 * 111.45359 * 10 9 7 31 31 H 1.09002 * 109.78747 * 350.97005 * 10 9 7 32 32 H 1.08990 * 109.49368 * 186.21145 * 11 10 9 33 33 H 1.09003 * 109.49140 * 66.12661 * 11 10 9 34 34 H 1.09002 * 109.47629 * 50.00196 * 13 12 11 35 35 H 1.09001 * 109.47369 * 289.99745 * 13 12 11 36 36 H 1.09000 * 109.47523 * 59.99770 * 14 13 12 37 37 H 1.09001 * 109.46659 * 299.99893 * 14 13 12 38 38 H 0.96994 * 119.99794 * 359.97438 * 15 14 13 39 39 H 1.07996 * 126.20806 * 0.02562 * 19 18 16 40 40 H 1.07996 * 119.85454 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.26912 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.42808 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.49892 * 56.85349 * 27 12 11 44 44 H 1.09003 * 109.48642 * 176.93739 * 27 12 11 45 45 H 1.09000 * 109.62514 * 248.54700 * 28 9 7 46 46 H 1.08995 * 109.62835 * 9.12720 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2127 6 1 1.8913 2.3965 1.2123 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2745 9 7 1.3707 -2.3622 -0.3462 10 6 1.8311 -3.6609 0.1682 11 6 2.0027 -4.6200 -1.0145 12 7 0.7551 -4.6655 -1.7889 13 6 0.8189 -5.7005 -2.8293 14 6 -0.5686 -5.8902 -3.4456 15 7 -0.5052 -6.9229 -4.4829 16 6 -1.6164 -7.2602 -5.1668 17 8 -2.6714 -6.7079 -4.9227 18 6 -1.5537 -8.3067 -6.2097 19 6 -2.6310 -8.7562 -6.9808 20 6 -2.1530 -9.7344 -7.8382 21 7 -2.7502 -10.4832 -8.7769 22 6 -2.0689 -11.3659 -9.4669 23 6 -0.6963 -11.5411 -9.2327 24 6 -0.0803 -10.7906 -8.2881 25 7 -0.8122 -9.8774 -7.5822 26 7 -0.4701 -8.9786 -6.5653 27 6 0.4405 -3.3535 -2.3699 28 6 0.2048 -2.3425 -1.2427 29 1 -0.4850 0.8399 -0.0004 30 1 1.0921 -4.0630 0.8614 31 1 2.7850 -3.5375 0.6811 32 1 2.2367 -5.6175 -0.6429 33 1 2.8141 -4.2693 -1.6523 34 1 1.1519 -6.6397 -2.3877 35 1 1.5217 -5.3940 -3.6041 36 1 -0.9016 -4.9510 -3.8873 37 1 -1.2714 -6.1967 -2.6708 38 1 0.3367 -7.3632 -4.6779 39 1 -3.6497 -8.4027 -6.9210 40 1 -2.5661 -11.9606 -10.2188 41 1 -0.1356 -12.2685 -9.8009 42 1 0.9752 -10.9130 -8.0948 43 1 1.2736 -3.0205 -2.9889 44 1 -0.4585 -3.4327 -2.9813 45 1 -0.6904 -2.6179 -0.6851 46 1 0.0843 -1.3449 -1.6648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316972436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:14 Heat of formation + Delta-G solvation = 129.089420 kcal Electronic energy + Delta-G solvation = -28522.761817 eV Core-core repulsion = 24451.002572 eV Total energy + Delta-G solvation = -4071.759246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.81716 -39.94735 -38.41376 -38.04225 -35.50086 -34.57707 -34.01249 -31.91591 -31.32523 -29.93126 -29.64462 -28.99593 -26.38290 -25.31963 -24.39564 -23.36806 -22.78150 -22.43224 -21.31994 -20.51378 -19.11203 -18.81994 -18.27725 -17.17607 -16.81499 -16.65745 -16.13983 -15.98597 -15.60742 -15.05954 -14.89279 -14.55330 -14.41686 -14.20949 -13.90870 -13.68598 -13.55963 -13.43940 -13.41349 -13.05906 -12.92419 -12.53438 -11.85154 -11.81271 -11.64033 -11.42666 -11.31177 -11.05474 -10.74601 -10.54908 -10.46143 -10.39694 -10.27654 -10.08409 -10.04359 -9.74227 -9.60967 -9.18551 -8.49597 -8.49107 -7.88693 -6.65220 -5.76125 -3.17409 -0.07830 0.19170 1.38877 1.42269 2.72104 2.80656 3.07601 3.32354 3.38473 3.46182 3.48246 3.53173 3.79945 4.24107 4.33978 4.45355 4.52607 4.70728 4.78798 4.92640 4.96669 5.14807 5.22913 5.41319 5.42257 5.43594 5.52050 5.75698 5.82063 5.87340 5.91244 5.93982 6.02570 6.11446 6.19308 6.26353 6.34031 6.54705 6.66174 6.69736 6.93646 7.03338 7.24504 7.26736 7.54249 7.64937 7.71064 7.83056 7.89859 8.45260 9.23058 9.86491 10.44946 11.32717 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.001663 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.778299 B =16835.739181 C =17162.658581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.119 3.881 15 N -0.710 5.710 16 C 0.597 3.403 17 O -0.512 6.512 18 C 0.078 3.922 19 C -0.198 4.198 20 C 0.249 3.751 21 N -0.455 5.455 22 C 0.179 3.821 23 C -0.220 4.220 24 C 0.161 3.839 25 N -0.306 5.306 26 N -0.279 5.279 27 C 0.030 3.970 28 C 0.177 3.823 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.406 0.594 39 H 0.175 0.825 40 H 0.183 0.817 41 H 0.170 0.830 42 H 0.182 0.818 43 H 0.026 0.974 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 -26.695 -20.207 33.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.084 4.084 14 C -0.004 4.004 15 N -0.361 5.361 16 C 0.379 3.621 17 O -0.384 6.384 18 C -0.082 4.082 19 C -0.229 4.229 20 C 0.023 3.977 21 N -0.166 5.166 22 C -0.007 4.007 23 C -0.245 4.245 24 C 0.028 3.972 25 N -0.079 5.079 26 N -0.109 5.109 27 C -0.099 4.099 28 C 0.051 3.949 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.241 0.759 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.188 0.812 42 H 0.199 0.801 43 H 0.044 0.956 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.372 -25.960 -19.296 32.348 hybrid contribution 1.627 0.643 -0.858 1.948 sum 1.255 -25.317 -20.155 32.384 Atomic orbital electron populations 1.70034 1.05189 1.25390 1.54057 1.25028 0.95305 0.98345 1.01074 0.86235 0.79273 0.84049 0.77281 1.20353 1.21596 1.21713 1.19230 0.92591 0.84784 1.41571 0.91612 1.44132 1.34162 1.01241 1.52347 1.20972 0.97854 0.86497 0.92523 1.22629 0.89249 0.99531 0.96893 1.61880 1.34698 1.05754 1.23069 1.22192 0.94827 0.97075 0.94348 1.21512 0.98570 0.90700 0.89596 1.45818 1.11325 1.40905 1.38091 1.16783 0.84350 0.80953 0.80018 1.90871 1.29184 1.52675 1.65699 1.22145 0.91668 0.96838 0.97516 1.21020 1.01324 1.01013 0.99546 1.20564 0.81461 0.98664 0.97057 1.68271 1.36417 1.06423 1.05477 1.23485 0.91105 0.91532 0.94546 1.21905 0.97160 1.04002 1.01395 1.22127 0.98983 0.86381 0.89743 1.47159 1.09214 1.25982 1.25578 1.78100 1.21095 1.06643 1.05095 1.23021 0.98877 0.89189 0.98793 1.20876 0.89005 0.96585 0.88397 0.93634 0.95587 0.92563 0.91952 0.95330 0.90735 0.94854 0.90512 0.89840 0.75946 0.80791 0.80026 0.81223 0.80078 0.95558 0.91699 0.95384 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 11.15 55.49 0.62 -25.90 16 2 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 3 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.25 -6.99 9.63 -15.06 -0.15 -7.14 16 8 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 9 N -0.60 -15.19 3.04 -172.01 -0.52 -15.72 16 10 C 0.15 3.15 6.69 -3.60 -0.02 3.13 16 11 C 0.05 0.82 5.62 -3.70 -0.02 0.79 16 12 N -0.53 -9.23 4.63 -234.32 -1.08 -10.32 16 13 C 0.04 0.60 5.08 -3.82 -0.02 0.58 16 14 C 0.12 1.61 5.60 -4.04 -0.02 1.58 16 15 N -0.71 -8.44 5.55 -61.23 -0.34 -8.78 16 16 C 0.60 8.17 7.83 -12.31 -0.10 8.07 16 17 O -0.51 -8.63 16.88 5.32 0.09 -8.54 16 18 C 0.08 0.96 7.05 -83.07 -0.59 0.37 16 19 C -0.20 -2.36 10.65 -38.83 -0.41 -2.77 16 20 C 0.25 2.63 7.90 -155.42 -1.23 1.41 16 21 N -0.46 -3.98 10.48 -12.23 -0.13 -4.11 16 22 C 0.18 0.74 11.27 -17.06 -0.19 0.55 16 23 C -0.22 -0.52 10.05 -39.78 -0.40 -0.92 16 24 C 0.16 0.76 11.30 -16.39 -0.19 0.57 16 25 N -0.31 -2.84 3.90 -12.20 -0.05 -2.89 16 26 N -0.28 -3.08 12.34 33.23 0.41 -2.67 16 27 C 0.03 0.59 5.46 -3.70 -0.02 0.57 16 28 C 0.18 4.34 5.42 -3.60 -0.02 4.32 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 32 H 0.06 0.93 7.99 -51.93 -0.41 0.51 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 35 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.08 1.14 6.40 -51.93 -0.33 0.81 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.41 3.98 8.16 -40.82 -0.33 3.65 16 39 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 40 H 0.18 0.03 8.06 -52.49 -0.42 -0.39 16 41 H 0.17 -0.28 8.06 -52.49 -0.42 -0.70 16 42 H 0.18 0.27 8.06 -52.49 -0.42 -0.16 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 1.17 6.16 -51.93 -0.32 0.85 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -35.60 381.39 -10.07 -45.67 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.32 Total: -0.40 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -3.46 Total: 11.06 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.09 Total: -70.37 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.60 -10.07 -45.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316972436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.757 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds