Wall clock time and date at job start Wed Apr 1 2020 04:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46623 * 299.99493 * 3 2 1 6 6 H 1.48493 * 109.47366 * 59.99359 * 3 2 1 7 7 C 1.38813 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99800 * 197.03037 * 7 2 1 9 9 N 1.36932 * 120.00297 * 17.02974 * 7 2 1 10 10 C 1.47081 * 120.88310 * 206.58115 * 9 7 2 11 11 C 1.53237 * 108.52434 * 231.16144 * 10 9 7 12 12 N 1.46906 * 109.33760 * 306.17119 * 11 10 9 13 13 C 1.46896 * 110.99554 * 187.25038 * 12 11 10 14 14 C 1.53004 * 109.46916 * 170.00287 * 13 12 11 15 15 N 1.46501 * 109.47160 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99974 * 180.02562 * 15 14 13 17 17 O 1.21557 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.47880 * 119.99966 * 180.27197 * 16 15 14 19 19 C 1.39899 * 125.69046 * 179.43625 * 18 16 15 20 20 C 1.38583 * 107.58922 * 179.83822 * 19 18 16 21 21 N 1.34112 * 132.34162 * 180.09435 * 20 19 18 22 22 C 1.31125 * 120.84640 * 180.36295 * 21 20 19 23 23 C 1.40345 * 120.29475 * 359.97438 * 22 21 20 24 24 C 1.35454 * 119.46513 * 359.97438 * 23 22 21 25 25 N 1.36672 * 119.13953 * 0.02562 * 24 23 22 26 26 N 1.32368 * 125.69285 * 359.74886 * 18 16 15 27 27 C 1.46902 * 111.26665 * 63.10563 * 12 11 10 28 28 C 1.47083 * 120.87999 * 26.55737 * 9 7 2 29 29 H 0.96991 * 120.00282 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.62886 * 111.45359 * 10 9 7 31 31 H 1.09002 * 109.78747 * 350.97005 * 10 9 7 32 32 H 1.08990 * 109.49368 * 186.21145 * 11 10 9 33 33 H 1.09003 * 109.49140 * 66.12661 * 11 10 9 34 34 H 1.09002 * 109.47629 * 50.00196 * 13 12 11 35 35 H 1.09001 * 109.47369 * 289.99745 * 13 12 11 36 36 H 1.09000 * 109.47523 * 59.99770 * 14 13 12 37 37 H 1.09001 * 109.46659 * 299.99893 * 14 13 12 38 38 H 0.96994 * 119.99794 * 359.97438 * 15 14 13 39 39 H 1.07996 * 126.20806 * 0.02562 * 19 18 16 40 40 H 1.07996 * 119.85454 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.26912 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.42808 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.49892 * 56.85349 * 27 12 11 44 44 H 1.09003 * 109.48642 * 176.93739 * 27 12 11 45 45 H 1.09000 * 109.62514 * 248.54700 * 28 9 7 46 46 H 1.08995 * 109.62835 * 9.12720 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2127 6 1 1.8913 2.3965 1.2123 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2745 9 7 1.3707 -2.3622 -0.3462 10 6 1.8311 -3.6609 0.1682 11 6 2.0027 -4.6200 -1.0145 12 7 0.7551 -4.6655 -1.7889 13 6 0.8189 -5.7005 -2.8293 14 6 -0.5686 -5.8902 -3.4456 15 7 -0.5052 -6.9229 -4.4829 16 6 -1.6164 -7.2602 -5.1668 17 8 -2.6714 -6.7079 -4.9227 18 6 -1.5537 -8.3067 -6.2097 19 6 -2.6310 -8.7562 -6.9808 20 6 -2.1530 -9.7344 -7.8382 21 7 -2.7502 -10.4832 -8.7769 22 6 -2.0689 -11.3659 -9.4669 23 6 -0.6963 -11.5411 -9.2327 24 6 -0.0803 -10.7906 -8.2881 25 7 -0.8122 -9.8774 -7.5822 26 7 -0.4701 -8.9786 -6.5653 27 6 0.4405 -3.3535 -2.3699 28 6 0.2048 -2.3425 -1.2427 29 1 -0.4850 0.8399 -0.0004 30 1 1.0921 -4.0630 0.8614 31 1 2.7850 -3.5375 0.6811 32 1 2.2367 -5.6175 -0.6429 33 1 2.8141 -4.2693 -1.6523 34 1 1.1519 -6.6397 -2.3877 35 1 1.5217 -5.3940 -3.6041 36 1 -0.9016 -4.9510 -3.8873 37 1 -1.2714 -6.1967 -2.6708 38 1 0.3367 -7.3632 -4.6779 39 1 -3.6497 -8.4027 -6.9210 40 1 -2.5661 -11.9606 -10.2188 41 1 -0.1356 -12.2685 -9.8009 42 1 0.9752 -10.9130 -8.0948 43 1 1.2736 -3.0205 -2.9889 44 1 -0.4585 -3.4327 -2.9813 45 1 -0.6904 -2.6179 -0.6851 46 1 0.0843 -1.3449 -1.6648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316972436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:13 Heat of formation + Delta-G solvation = 101.961288 kcal Electronic energy + Delta-G solvation = -28523.938181 eV Core-core repulsion = 24451.002572 eV Total energy + Delta-G solvation = -4072.935610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.44120 -40.96250 -39.75851 -38.85204 -36.92954 -35.54278 -35.11452 -33.36621 -32.36346 -31.65375 -30.36710 -30.27520 -27.88522 -26.23758 -25.16612 -24.77533 -24.26675 -23.49962 -22.57968 -21.46057 -20.82382 -19.48747 -18.97155 -18.69281 -17.69704 -17.38199 -17.32792 -16.83095 -16.64257 -16.62406 -16.05341 -15.82177 -15.48646 -15.33517 -15.26408 -15.11436 -14.93420 -14.70978 -14.46185 -14.15578 -13.85904 -13.64972 -13.22605 -13.01948 -12.87872 -12.65742 -12.61065 -12.53814 -12.37580 -12.21914 -12.03681 -11.86624 -11.65097 -11.56029 -11.37863 -10.95438 -10.68895 -10.60137 -10.27370 -9.31825 -9.15262 -8.69013 -7.87785 -5.32593 -0.54731 -0.36890 0.64396 0.82081 1.45572 1.46900 1.57814 1.75756 2.05538 2.38154 2.50408 2.76004 2.81943 3.10824 3.27985 3.56596 3.66014 3.68863 3.82250 3.99290 4.03974 4.19864 4.28889 4.34613 4.36327 4.43713 4.49078 4.54649 4.61005 4.64275 4.70750 4.79188 4.89271 4.96295 5.02972 5.04643 5.05535 5.15509 5.21613 5.34252 5.37622 5.61226 5.67956 5.95883 6.12836 6.19773 6.33830 6.37109 6.55371 6.89975 7.12699 7.83810 8.38074 9.19320 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.001663 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.778299 B =16835.739181 C =17162.658581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.541 5.541 13 C 0.054 3.946 14 C 0.127 3.873 15 N -0.694 5.694 16 C 0.598 3.402 17 O -0.554 6.554 18 C 0.063 3.937 19 C -0.237 4.237 20 C 0.248 3.752 21 N -0.497 5.497 22 C 0.189 3.811 23 C -0.188 4.188 24 C 0.136 3.864 25 N -0.306 5.306 26 N -0.290 5.290 27 C 0.048 3.952 28 C 0.184 3.816 29 H 0.250 0.750 30 H 0.015 0.985 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.029 0.971 34 H 0.103 0.897 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.419 0.581 39 H 0.162 0.838 40 H 0.226 0.774 41 H 0.224 0.776 42 H 0.215 0.785 43 H 0.024 0.976 44 H 0.077 0.923 45 H -0.003 1.003 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 -30.277 -22.750 38.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.016 3.984 11 C -0.071 4.071 12 N -0.266 5.266 13 C -0.074 4.074 14 C 0.003 3.997 15 N -0.346 5.346 16 C 0.381 3.619 17 O -0.430 6.430 18 C -0.095 4.095 19 C -0.269 4.269 20 C 0.020 3.980 21 N -0.210 5.210 22 C 0.006 3.994 23 C -0.211 4.211 24 C 0.004 3.996 25 N -0.080 5.080 26 N -0.121 5.121 27 C -0.081 4.081 28 C 0.058 3.942 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.047 0.953 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.256 0.744 39 H 0.180 0.820 40 H 0.242 0.758 41 H 0.241 0.759 42 H 0.232 0.768 43 H 0.042 0.958 44 H 0.095 0.905 45 H 0.015 0.985 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.457 -29.613 -21.859 36.889 hybrid contribution 0.796 1.455 -0.248 1.677 sum 3.253 -28.158 -22.108 35.947 Atomic orbital electron populations 1.70202 1.06749 1.25788 1.55610 1.25824 0.96060 1.01605 1.01423 0.85184 0.78632 0.79754 0.76729 1.18901 1.21776 1.21935 1.19591 0.92963 0.85936 1.40743 0.91211 1.44414 1.34131 1.02301 1.52989 1.21165 0.97606 0.85463 0.94189 1.22480 0.89028 1.00322 0.95278 1.61757 1.35097 1.05193 1.24588 1.22173 0.94710 0.96747 0.93734 1.21303 0.98571 0.90329 0.89467 1.45615 1.11533 1.40240 1.37226 1.17012 0.83965 0.80818 0.80058 1.90835 1.30719 1.54348 1.67135 1.21770 0.92490 0.97366 0.97880 1.20997 1.01140 1.03162 1.01591 1.20568 0.82136 0.98333 0.96993 1.68370 1.37577 1.08394 1.06629 1.24463 0.92268 0.89397 0.93258 1.22585 0.96394 1.02734 0.99397 1.23079 1.00672 0.85846 0.89968 1.47375 1.09298 1.26090 1.25199 1.77952 1.20405 1.07442 1.06280 1.22640 0.99414 0.89407 0.96643 1.20610 0.87923 0.96334 0.89309 0.94118 0.96653 0.91798 0.88090 0.95292 0.87879 0.93507 0.92210 0.91113 0.74411 0.82028 0.75777 0.75942 0.76830 0.95824 0.90503 0.98482 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.25 11.15 21.65 0.24 -57.01 16 2 C -0.05 -3.09 4.93 84.86 0.42 -2.68 16 3 Si 0.97 45.78 29.59 68.60 2.03 47.81 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 7 C -0.26 -14.75 9.63 84.03 0.81 -13.94 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 9 N -0.61 -31.94 3.04 -698.12 -2.12 -34.06 16 10 C 0.14 5.95 6.69 86.35 0.58 6.52 16 11 C 0.06 1.90 5.62 86.38 0.49 2.39 16 12 N -0.54 -18.19 4.63 -895.24 -4.15 -22.34 16 13 C 0.05 1.34 5.08 86.31 0.44 1.78 16 14 C 0.13 3.39 5.60 86.38 0.48 3.87 16 15 N -0.69 -16.40 5.55 -465.92 -2.59 -18.99 16 16 C 0.60 17.24 7.83 86.80 0.68 17.92 16 17 O -0.55 -20.12 16.88 -3.90 -0.07 -20.19 16 18 C 0.06 1.63 7.05 42.02 0.30 1.93 16 19 C -0.24 -6.14 10.65 22.75 0.24 -5.89 16 20 C 0.25 5.24 7.90 133.00 1.05 6.30 16 21 N -0.50 -8.02 10.48 -192.59 -2.02 -10.04 16 22 C 0.19 0.80 11.27 85.31 0.96 1.76 16 23 C -0.19 0.11 10.05 22.14 0.22 0.33 16 24 C 0.14 0.78 11.30 83.30 0.94 1.72 16 25 N -0.31 -5.28 3.90 -192.50 -0.75 -6.03 16 26 N -0.29 -6.30 12.34 -48.79 -0.60 -6.91 16 27 C 0.05 1.91 5.46 86.38 0.47 2.38 16 28 C 0.18 9.39 5.42 86.35 0.47 9.86 16 29 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 2.54 7.96 -2.39 -0.02 2.52 16 32 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 2.03 7.97 -2.39 -0.02 2.01 16 35 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 36 H 0.06 1.82 6.40 -2.39 -0.02 1.80 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.42 7.70 8.16 -92.71 -0.76 6.94 16 39 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.23 -1.15 8.06 -2.91 -0.02 -1.17 16 41 H 0.22 -2.46 8.06 -2.91 -0.02 -2.48 16 42 H 0.22 -0.34 8.06 -2.91 -0.02 -0.37 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.08 2.84 6.16 -2.39 -0.01 2.82 16 45 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.06 3.18 6.12 -2.39 -0.01 3.17 16 Total: -1.00 -84.21 381.39 -1.21 -85.42 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.26 Total: 8.08 kcal Atomic # 6 Polarization: 25.70 SS G_CDS: 8.55 Total: 34.25 kcal Atomic # 7 Polarization: -143.39 SS G_CDS: -11.98 Total: -155.37 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.07 Total: -20.19 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -84.21 -1.21 -85.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316972436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.386 kcal (2) G-P(sol) polarization free energy of solvation -84.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds