Wall clock time and date at job start Wed Apr 1 2020 04:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99583 * 2 1 4 4 H 1.48497 * 109.47067 * 90.00406 * 3 2 1 5 5 H 1.48504 * 109.47170 * 210.00401 * 3 2 1 6 6 H 1.48501 * 109.47142 * 330.00203 * 3 2 1 7 7 C 1.38813 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99663 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99916 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46821 * 185.23359 * 11 10 9 13 13 H 1.09000 * 109.58878 * 59.85788 * 12 11 10 14 14 C 1.53187 * 109.58788 * 299.57099 * 12 11 10 15 15 C 1.53052 * 109.31283 * 185.57941 * 14 12 11 16 16 C 1.53036 * 109.53530 * 61.36632 * 15 14 12 17 17 C 1.53192 * 109.31503 * 298.63148 * 16 15 14 18 18 N 1.46926 * 109.58536 * 180.27989 * 12 11 10 19 19 C 1.34777 * 120.62969 * 353.40111 * 18 12 11 20 20 O 1.21568 * 119.99967 * 5.89575 * 19 18 12 21 21 C 1.47727 * 119.99910 * 185.89514 * 19 18 12 22 22 C 1.40122 * 120.34850 * 38.44766 * 21 19 18 23 23 N 1.31264 * 121.14589 * 179.71038 * 22 21 19 24 24 C 1.32713 * 121.79998 * 0.55325 * 23 22 21 25 25 N 1.37119 * 133.40544 * 179.68776 * 24 23 22 26 26 H 0.97006 * 126.59006 * 0.02562 * 25 24 23 27 27 N 1.40189 * 106.81968 * 180.02562 * 25 24 23 28 28 N 1.28668 * 109.51180 * 359.97438 * 27 25 24 29 29 C 1.35333 * 109.99693 * 0.02562 * 28 27 25 30 30 C 1.39423 * 120.35097 * 218.71598 * 21 19 18 31 31 H 0.96999 * 120.00482 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00250 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46645 * 299.99256 * 10 9 7 34 34 H 1.08991 * 109.47499 * 59.99256 * 10 9 7 35 35 H 1.08996 * 109.47150 * 305.23073 * 11 10 9 36 36 H 1.08998 * 109.46994 * 65.23414 * 11 10 9 37 37 H 1.09004 * 109.49910 * 305.52611 * 14 12 11 38 38 H 1.08995 * 109.49877 * 65.62676 * 14 12 11 39 39 H 1.08995 * 109.45758 * 181.38469 * 15 14 12 40 40 H 1.08997 * 109.45713 * 301.34475 * 15 14 12 41 41 H 1.08996 * 109.50137 * 58.58532 * 16 15 14 42 42 H 1.09003 * 109.49284 * 178.68637 * 16 15 14 43 43 H 1.08998 * 109.59083 * 174.42290 * 17 16 15 44 44 H 1.09002 * 109.58891 * 294.71061 * 17 16 15 45 45 H 1.07995 * 119.42479 * 359.97438 * 22 21 19 46 46 H 1.07998 * 120.95786 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4000 5 1 3.5476 1.4404 -0.7001 6 1 1.4474 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4707 -0.0011 11 6 5.6165 -2.1910 -0.0009 12 6 6.3804 -3.5100 -0.1337 13 1 6.1013 -4.0017 -1.0655 14 6 6.0407 -4.4215 1.0497 15 6 6.9107 -5.6791 0.9859 16 6 8.3864 -5.2862 1.0869 17 6 8.7527 -4.3844 -0.0961 18 7 7.8255 -3.2450 -0.1270 19 6 8.2919 -1.9806 -0.1485 20 8 7.5188 -1.0461 -0.0656 21 6 9.7425 -1.7305 -0.2729 22 6 10.5300 -2.5322 -1.1099 23 7 11.8192 -2.3203 -1.2365 24 6 12.4368 -1.3502 -0.5742 25 7 13.7401 -0.9272 -0.5211 26 1 14.4908 -1.3050 -1.0056 27 7 13.7790 0.1562 0.3677 28 7 12.5969 0.3811 0.8232 29 6 11.7202 -0.5023 0.2915 30 6 10.3435 -0.6977 0.4455 31 1 -0.4851 0.8400 -0.0004 32 1 3.8646 -0.3619 0.0004 33 1 3.8486 -3.0432 0.8882 34 1 3.8492 -3.0414 -0.8917 35 1 5.8653 -1.5410 -0.8397 36 1 5.8949 -1.7022 0.9327 37 1 6.2335 -3.8929 1.9833 38 1 4.9891 -4.7039 1.0014 39 1 6.6537 -6.3407 1.8131 40 1 6.7358 -6.1941 0.0414 41 1 8.5569 -4.7493 2.0200 42 1 9.0042 -6.1840 1.0649 43 1 9.7736 -4.0217 0.0232 44 1 8.6718 -4.9492 -1.0249 45 1 10.0674 -3.3357 -1.6637 46 1 9.7627 -0.0660 1.1013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319759294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:58 Heat of formation + Delta-G solvation = 99.715849 kcal Electronic energy + Delta-G solvation = -30004.452395 eV Core-core repulsion = 25931.419416 eV Total energy + Delta-G solvation = -4073.032979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.60148 -41.86097 -39.73050 -38.44009 -37.10893 -35.30428 -34.62019 -33.93533 -33.00016 -32.79699 -31.55027 -29.52873 -26.97064 -26.23281 -25.40289 -25.01687 -23.90546 -23.68455 -22.24004 -22.05240 -20.63587 -19.90093 -19.75653 -19.22487 -17.88567 -17.40632 -17.28343 -17.03980 -16.59298 -16.38576 -15.87878 -15.68257 -15.57181 -15.08143 -14.86333 -14.71926 -14.44051 -14.37388 -14.27623 -14.17773 -13.89699 -13.76788 -13.62279 -13.19403 -13.03898 -12.85315 -12.76699 -12.74028 -12.26049 -12.11800 -11.88687 -11.84206 -11.79108 -11.51246 -11.37916 -11.05404 -10.95811 -10.53226 -10.31939 -10.10026 -9.55354 -9.27729 -8.04016 -5.35831 -1.02297 -0.53769 0.81974 0.86414 1.37494 1.38176 1.46938 1.52120 1.77464 2.32633 2.47079 2.63708 2.99286 3.05034 3.27545 3.29423 3.44351 3.54075 3.72553 3.86444 3.94292 4.05011 4.13016 4.14801 4.30414 4.40872 4.45412 4.52728 4.55034 4.58791 4.72251 4.74970 4.85795 4.89682 4.95603 5.01374 5.14259 5.23044 5.30253 5.42131 5.43510 5.55434 5.63183 5.69145 5.75258 6.21440 6.24474 6.34356 6.53754 7.06892 7.07427 7.86352 8.04158 9.17526 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.002885 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.068870 B = 9701.884744 C =11653.069316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.261 1.261 6 H -0.291 1.291 7 C -0.232 4.232 8 H 0.062 0.938 9 N -0.762 5.762 10 C 0.148 3.852 11 C -0.100 4.100 12 C 0.159 3.841 13 H 0.096 0.904 14 C -0.133 4.133 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.089 3.911 18 N -0.594 5.594 19 C 0.562 3.438 20 O -0.554 6.554 21 C -0.197 4.197 22 C 0.224 3.776 23 N -0.484 5.484 24 C 0.289 3.711 25 N -0.463 5.463 26 H 0.470 0.530 27 N 0.011 4.989 28 N -0.217 5.217 29 C -0.086 4.086 30 C 0.069 3.931 31 H 0.258 0.742 32 H 0.362 0.638 33 H 0.028 0.972 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.219 0.781 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.023 -14.747 -1.974 36.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.186 1.186 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.080 0.920 9 N -0.408 5.408 10 C 0.022 3.978 11 C -0.138 4.138 12 C 0.056 3.944 13 H 0.114 0.886 14 C -0.171 4.171 15 C -0.153 4.153 16 C -0.170 4.170 17 C -0.031 4.031 18 N -0.326 5.326 19 C 0.350 3.650 20 O -0.433 6.433 21 C -0.206 4.206 22 C 0.051 3.949 23 N -0.198 5.198 24 C 0.043 3.957 25 N -0.191 5.191 26 H 0.322 0.678 27 N 0.028 4.972 28 N -0.098 5.098 29 C -0.212 4.212 30 C 0.039 3.961 31 H 0.067 0.933 32 H 0.195 0.805 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.128 0.872 45 H 0.235 0.765 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 33.908 -13.769 -1.758 36.639 hybrid contribution -0.816 1.138 0.057 1.401 sum 33.091 -12.632 -1.700 35.461 Atomic orbital electron populations 1.69863 1.06836 1.26613 1.59974 1.25434 0.96112 1.00942 1.02895 0.85464 0.78428 0.80178 0.78079 1.20585 1.18611 1.21717 1.19096 0.82651 0.93624 1.40895 0.92017 1.42822 1.02612 1.04471 1.90847 1.21004 0.91540 0.87125 0.98177 1.22046 0.92065 0.96752 1.02975 1.21220 0.78192 0.94942 0.99998 0.88631 1.22038 1.01068 0.96808 0.97231 1.21528 0.94301 0.96012 1.03493 1.21923 0.96948 1.00348 0.97762 1.22491 0.92850 0.86549 1.01253 1.48094 1.07279 1.05407 1.71806 1.18113 0.86888 0.83243 0.76771 1.90973 1.57108 1.44736 1.50469 1.20694 0.94968 1.00562 1.04414 1.23782 0.86054 0.94618 0.90494 1.66892 1.11479 1.17930 1.23520 1.19716 0.87260 0.93852 0.94824 1.47527 1.07302 1.26561 1.37679 0.67827 1.81701 1.14150 0.99696 1.01644 1.74912 0.96775 1.19614 1.18487 1.20494 0.96352 0.99727 1.04660 1.21057 0.89885 0.92247 0.92937 0.93293 0.80508 0.95379 0.95563 0.91553 0.92569 0.92971 0.90752 0.91039 0.90023 0.92740 0.87821 0.88361 0.87176 0.76495 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.92 13.97 21.65 0.30 -64.61 16 2 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.95 48.88 27.73 68.60 1.90 50.78 16 4 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 5 H -0.26 -12.70 6.52 99.48 0.65 -12.05 16 6 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 7 C -0.23 -13.92 10.47 84.03 0.88 -13.04 16 8 H 0.06 3.97 8.06 -2.91 -0.02 3.94 16 9 N -0.76 -38.81 5.41 -343.45 -1.86 -40.67 16 10 C 0.15 5.86 5.77 86.38 0.50 6.36 16 11 C -0.10 -3.27 3.25 30.59 0.10 -3.17 16 12 C 0.16 3.41 3.01 44.97 0.14 3.54 16 13 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 14 C -0.13 -2.53 4.86 30.67 0.15 -2.38 16 15 C -0.12 -1.29 5.88 30.62 0.18 -1.11 16 16 C -0.13 -1.04 6.08 30.67 0.19 -0.86 16 17 C 0.09 0.65 4.84 86.36 0.42 1.07 16 18 N -0.59 -9.90 2.97 -798.53 -2.37 -12.27 16 19 C 0.56 12.23 7.27 86.75 0.63 12.87 16 20 O -0.55 -17.65 12.32 -3.93 -0.05 -17.70 16 21 C -0.20 -3.26 5.19 -20.03 -0.10 -3.36 16 22 C 0.22 2.43 8.53 85.24 0.73 3.15 16 23 N -0.48 -6.35 10.37 -191.98 -1.99 -8.34 16 24 C 0.29 4.59 8.49 134.01 1.14 5.72 16 25 N -0.46 -5.84 7.52 -55.37 -0.42 -6.26 16 26 H 0.47 2.28 8.96 -213.25 -1.91 0.37 16 27 N 0.01 0.20 13.82 37.02 0.51 0.71 16 28 N -0.22 -4.76 12.40 -52.14 -0.65 -5.41 16 29 C -0.09 -1.70 7.27 39.63 0.29 -1.41 16 30 C 0.07 1.32 9.82 22.96 0.23 1.55 16 31 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 32 H 0.36 18.37 5.53 -92.71 -0.51 17.86 16 33 H 0.03 1.11 6.87 -2.38 -0.02 1.09 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 2.43 6.48 -2.39 -0.02 2.42 16 36 H 0.06 2.04 7.00 -2.39 -0.02 2.03 16 37 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.57 6.89 -2.39 -0.02 1.56 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.10 0.49 4.65 -2.39 -0.01 0.48 16 44 H 0.11 0.21 8.09 -2.39 -0.02 0.19 16 45 H 0.22 0.78 6.37 -2.91 -0.02 0.76 16 46 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -82.16 365.75 -0.13 -82.28 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -1.43 Total: 15.93 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.92 Total: 5.55 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -6.47 Total: -136.85 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.90 Total: 50.78 kcal Total: -82.16 -0.13 -82.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319759294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.001 kcal (2) G-P(sol) polarization free energy of solvation -82.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds