Wall clock time and date at job start Wed Apr 1 2020 04:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47037 * 269.99351 * 3 2 1 5 5 H 1.48494 * 109.47202 * 29.99827 * 3 2 1 6 6 H 1.48501 * 109.47087 * 149.99917 * 3 2 1 7 7 C 1.38813 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99950 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00408 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00458 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47484 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47153 * 55.00066 * 11 10 9 13 13 C 1.53002 * 109.46817 * 295.00296 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.47060 * 175.00385 * 11 10 9 18 18 H 1.08992 * 109.47399 * 59.99823 * 17 11 10 19 19 N 1.46500 * 109.47023 * 299.99760 * 17 11 10 20 20 C 1.34777 * 120.00075 * 155.00453 * 19 17 11 21 21 O 1.21541 * 119.99708 * 359.97438 * 20 19 17 22 22 C 1.47873 * 120.00248 * 180.02562 * 20 19 17 23 23 C 1.39453 * 121.11198 * 359.71099 * 22 20 19 24 24 C 1.38620 * 119.37356 * 179.74091 * 23 22 20 25 25 N 1.31588 * 121.63455 * 0.57552 * 24 23 22 26 26 C 1.32209 * 121.86737 * 359.69789 * 25 24 23 27 27 N 1.37212 * 134.67456 * 179.97438 * 26 25 24 28 28 H 0.97001 * 125.86535 * 359.97438 * 27 26 25 29 29 N 1.28777 * 108.26303 * 180.02562 * 27 26 25 30 30 N 1.28697 * 111.75726 * 0.02562 * 29 27 26 31 31 C 1.34388 * 109.15207 * 0.02562 * 30 29 27 32 32 H 0.97002 * 119.99299 * 0.02562 * 1 2 3 33 33 H 0.97005 * 119.99958 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.46667 * 60.00304 * 10 9 7 35 35 H 1.09008 * 109.47241 * 300.00661 * 10 9 7 36 36 H 1.09002 * 109.47075 * 299.99262 * 13 11 10 37 37 H 1.08996 * 109.47407 * 60.00219 * 13 11 10 38 38 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 40 40 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 41 41 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 43 43 H 1.09002 * 109.47067 * 299.99853 * 16 15 14 44 44 H 0.97006 * 120.00223 * 335.00118 * 19 17 11 45 45 H 1.08001 * 120.31708 * 0.02562 * 23 22 20 46 46 H 1.08005 * 119.18645 * 180.28206 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0636 -4.8197 0.0022 12 1 0.3792 -4.7130 -0.8393 13 6 0.2693 -4.8108 1.3099 14 6 -0.7245 -5.9741 1.3108 15 6 0.0366 -7.2954 1.1854 16 6 0.8310 -7.3042 -0.1223 17 6 1.8244 -6.1412 -0.1234 18 1 2.5088 -6.2479 0.7181 19 7 2.5849 -6.1497 -1.3755 20 6 3.6844 -6.9206 -1.4909 21 8 4.0452 -7.6083 -0.5560 22 6 4.4525 -6.9288 -2.7545 23 6 4.0566 -6.1526 -3.8433 24 6 4.8065 -6.1836 -5.0088 25 7 5.8795 -6.9372 -5.1193 26 6 6.3027 -7.6992 -4.1252 27 7 7.3540 -8.5639 -3.9526 28 1 8.0308 -8.7750 -4.6146 29 7 7.2870 -9.0477 -2.7611 30 7 6.2770 -8.5824 -2.1133 31 6 5.6042 -7.7266 -2.9012 32 1 -0.4849 0.8401 -0.0004 33 1 0.3555 -2.3881 0.0016 34 1 2.6852 -3.7142 0.8912 35 1 2.6840 -3.7150 -0.8888 36 1 0.9538 -4.9176 2.1515 37 1 -0.2726 -3.8694 1.3994 38 1 -1.2901 -5.9680 2.2426 39 1 -1.4090 -5.8678 0.4692 40 1 0.7211 -7.4017 2.0270 41 1 -0.6714 -8.1241 1.1865 42 1 1.3728 -8.2457 -0.2118 43 1 0.1465 -7.1979 -0.9639 44 1 2.2972 -5.6006 -2.1215 45 1 3.1769 -5.5296 -3.7776 46 1 4.4997 -5.5777 -5.8487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322344792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:48 Heat of formation + Delta-G solvation = 92.534954 kcal Electronic energy + Delta-G solvation = -29936.945172 eV Core-core repulsion = 25863.600806 eV Total energy + Delta-G solvation = -4073.344366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.72821 -40.41184 -39.24560 -38.08990 -34.65501 -34.49799 -34.30069 -32.34476 -31.88949 -31.14996 -29.68708 -29.22002 -25.97408 -25.19336 -24.22915 -23.65489 -23.03005 -22.17814 -20.89656 -20.63799 -20.03636 -19.00263 -18.76245 -17.73371 -17.17392 -16.93392 -16.26422 -15.69324 -15.22394 -15.12166 -14.73661 -14.52703 -14.25486 -13.98118 -13.79174 -13.61109 -13.30791 -13.20019 -13.04879 -12.71012 -12.63781 -12.45698 -11.99515 -11.89240 -11.80374 -11.54697 -11.12004 -10.91280 -10.89325 -10.73371 -10.56579 -10.29828 -10.21830 -10.11174 -9.98458 -9.74024 -9.66733 -9.64691 -9.43743 -8.97761 -8.86505 -6.94142 -5.79431 -3.07644 -0.29883 0.49833 1.79022 1.87412 2.62006 2.85852 3.36381 3.41297 3.42599 3.47460 3.48793 3.87485 4.07291 4.17014 4.39965 4.54943 4.77141 4.80699 4.89366 5.02202 5.09947 5.12775 5.24352 5.33325 5.36632 5.54916 5.57496 5.62070 5.65844 5.72994 5.78981 5.88638 6.08565 6.12535 6.18503 6.22788 6.24230 6.28182 6.37391 6.47639 6.55494 6.66831 6.75506 6.88446 7.09730 7.41028 7.68242 7.83565 8.09842 8.39819 9.51274 10.08696 10.43578 11.43344 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.003143 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.160880 B = 8905.973110 C =11096.245141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.158 3.842 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.155 3.845 18 H 0.091 0.909 19 N -0.710 5.710 20 C 0.552 3.448 21 O -0.502 6.502 22 C -0.006 4.006 23 C -0.139 4.139 24 C 0.164 3.836 25 N -0.460 5.460 26 C 0.214 3.786 27 N -0.407 5.407 28 H 0.457 0.543 29 N 0.000 5.000 30 N -0.208 5.208 31 C 0.002 3.998 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.401 0.599 45 H 0.162 0.838 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -17.579 -10.224 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.030 3.970 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.051 3.949 18 H 0.109 0.891 19 N -0.362 5.362 20 C 0.336 3.664 21 O -0.376 6.376 22 C -0.023 4.023 23 C -0.162 4.162 24 C -0.008 4.008 25 N -0.174 5.174 26 C -0.030 4.030 27 N -0.137 5.137 28 H 0.305 0.695 29 N 0.017 4.983 30 N -0.084 5.084 31 C -0.127 4.127 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.237 0.763 45 H 0.179 0.821 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.988 -18.972 -9.146 22.190 hybrid contribution -0.335 1.868 -0.961 2.127 sum 6.653 -17.104 -10.107 20.952 Atomic orbital electron populations 1.69655 1.05059 1.25626 1.57858 1.24713 0.95502 0.97607 1.03060 0.86217 0.78720 0.83934 0.77497 1.21751 1.21780 1.20800 1.19214 0.90997 0.84194 1.42566 0.91328 1.42358 1.05807 0.99850 1.89468 1.20673 0.93013 0.85353 0.97944 1.21602 0.97705 0.93214 0.99373 0.90577 1.21496 0.97674 0.98884 0.96444 1.21602 0.98072 0.94515 1.01713 1.21486 0.98778 0.97676 0.97354 1.21890 0.97805 0.98407 0.98402 1.21074 0.92709 0.95105 0.86053 0.89091 1.45991 1.27098 1.45475 1.17593 1.17838 0.80863 0.81023 0.86690 1.90867 1.67640 1.40398 1.38729 1.19735 0.92595 0.94545 0.95384 1.22502 1.01900 0.98953 0.92869 1.22892 0.87585 0.92996 0.97324 1.66334 1.15449 1.06258 1.29371 1.19876 0.92325 0.97497 0.93299 1.44698 1.22776 1.32555 1.13645 0.69462 1.78264 1.15025 1.15385 0.89601 1.75585 1.00680 1.09173 1.22977 1.20122 0.98583 1.01140 0.92818 0.93537 0.78197 0.96316 0.96434 0.91977 0.90163 0.92070 0.92005 0.91816 0.92119 0.91687 0.91813 0.76298 0.82098 0.79840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.41 5.33 -59.91 -0.32 -17.73 16 10 C 0.16 2.97 5.57 -4.05 -0.02 2.95 16 11 C -0.10 -1.45 1.80 -90.62 -0.16 -1.61 16 12 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 13 C -0.11 -1.55 5.08 -26.73 -0.14 -1.69 16 14 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.11 -1.26 5.92 -26.73 -0.16 -1.42 16 16 C -0.13 -1.46 5.49 -26.75 -0.15 -1.61 16 17 C 0.15 2.02 1.90 -67.95 -0.13 1.90 16 18 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 19 N -0.71 -8.45 4.26 -54.77 -0.23 -8.68 16 20 C 0.55 7.65 7.76 -12.32 -0.10 7.55 16 21 O -0.50 -8.85 15.93 5.33 0.08 -8.76 16 22 C -0.01 -0.07 5.92 -104.51 -0.62 -0.69 16 23 C -0.14 -1.10 9.61 -38.99 -0.37 -1.48 16 24 C 0.16 1.17 11.14 -17.52 -0.20 0.98 16 25 N -0.46 -4.36 10.35 -12.38 -0.13 -4.49 16 26 C 0.21 2.34 8.56 -156.21 -1.34 1.00 16 27 N -0.41 -3.69 7.06 31.11 0.22 -3.47 16 28 H 0.46 2.16 8.96 -190.25 -1.71 0.45 16 29 N 0.00 0.00 13.29 60.35 0.80 0.80 16 30 N -0.21 -3.12 11.92 32.23 0.38 -2.74 16 31 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.38 9.56 6.85 -40.82 -0.28 9.28 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.33 7.30 -51.92 -0.38 -0.05 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.36 7.18 -51.93 -0.37 0.99 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.40 3.86 6.54 -40.82 -0.27 3.59 16 45 H 0.16 0.82 6.53 -52.49 -0.34 0.48 16 46 H 0.18 0.59 8.06 -52.48 -0.42 0.16 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -35.35 377.63 -9.68 -45.04 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.51 Total: 7.35 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -4.37 Total: -3.35 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: 1.45 Total: -62.92 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.35 -9.68 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.572 kcal (2) G-P(sol) polarization free energy of solvation -35.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds