Wall clock time and date at job start Wed Apr 1 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47037 * 269.99351 * 3 2 1 5 5 H 1.48494 * 109.47202 * 29.99827 * 3 2 1 6 6 H 1.48501 * 109.47087 * 149.99917 * 3 2 1 7 7 C 1.38813 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99950 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00408 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00458 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47484 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47153 * 55.00066 * 11 10 9 13 13 C 1.53002 * 109.46817 * 295.00296 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.47060 * 175.00385 * 11 10 9 18 18 H 1.08992 * 109.47399 * 59.99823 * 17 11 10 19 19 N 1.46500 * 109.47023 * 299.99760 * 17 11 10 20 20 C 1.34777 * 120.00075 * 155.00453 * 19 17 11 21 21 O 1.21541 * 119.99708 * 359.97438 * 20 19 17 22 22 C 1.47873 * 120.00248 * 180.02562 * 20 19 17 23 23 C 1.39453 * 121.11198 * 359.71099 * 22 20 19 24 24 C 1.38620 * 119.37356 * 179.74091 * 23 22 20 25 25 N 1.31588 * 121.63455 * 0.57552 * 24 23 22 26 26 C 1.32209 * 121.86737 * 359.69789 * 25 24 23 27 27 N 1.37212 * 134.67456 * 179.97438 * 26 25 24 28 28 H 0.97001 * 125.86535 * 359.97438 * 27 26 25 29 29 N 1.28777 * 108.26303 * 180.02562 * 27 26 25 30 30 N 1.28697 * 111.75726 * 0.02562 * 29 27 26 31 31 C 1.34388 * 109.15207 * 0.02562 * 30 29 27 32 32 H 0.97002 * 119.99299 * 0.02562 * 1 2 3 33 33 H 0.97005 * 119.99958 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.46667 * 60.00304 * 10 9 7 35 35 H 1.09008 * 109.47241 * 300.00661 * 10 9 7 36 36 H 1.09002 * 109.47075 * 299.99262 * 13 11 10 37 37 H 1.08996 * 109.47407 * 60.00219 * 13 11 10 38 38 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 40 40 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 41 41 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 43 43 H 1.09002 * 109.47067 * 299.99853 * 16 15 14 44 44 H 0.97006 * 120.00223 * 335.00118 * 19 17 11 45 45 H 1.08001 * 120.31708 * 0.02562 * 23 22 20 46 46 H 1.08005 * 119.18645 * 180.28206 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0636 -4.8197 0.0022 12 1 0.3792 -4.7130 -0.8393 13 6 0.2693 -4.8108 1.3099 14 6 -0.7245 -5.9741 1.3108 15 6 0.0366 -7.2954 1.1854 16 6 0.8310 -7.3042 -0.1223 17 6 1.8244 -6.1412 -0.1234 18 1 2.5088 -6.2479 0.7181 19 7 2.5849 -6.1497 -1.3755 20 6 3.6844 -6.9206 -1.4909 21 8 4.0452 -7.6083 -0.5560 22 6 4.4525 -6.9288 -2.7545 23 6 4.0566 -6.1526 -3.8433 24 6 4.8065 -6.1836 -5.0088 25 7 5.8795 -6.9372 -5.1193 26 6 6.3027 -7.6992 -4.1252 27 7 7.3540 -8.5639 -3.9526 28 1 8.0308 -8.7750 -4.6146 29 7 7.2870 -9.0477 -2.7611 30 7 6.2770 -8.5824 -2.1133 31 6 5.6042 -7.7266 -2.9012 32 1 -0.4849 0.8401 -0.0004 33 1 0.3555 -2.3881 0.0016 34 1 2.6852 -3.7142 0.8912 35 1 2.6840 -3.7150 -0.8888 36 1 0.9538 -4.9176 2.1515 37 1 -0.2726 -3.8694 1.3994 38 1 -1.2901 -5.9680 2.2426 39 1 -1.4090 -5.8678 0.4692 40 1 0.7211 -7.4017 2.0270 41 1 -0.6714 -8.1241 1.1865 42 1 1.3728 -8.2457 -0.2118 43 1 0.1465 -7.1979 -0.9639 44 1 2.2972 -5.6006 -2.1215 45 1 3.1769 -5.5296 -3.7776 46 1 4.4997 -5.5777 -5.8487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322344792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:47 Heat of formation + Delta-G solvation = 66.751919 kcal Electronic energy + Delta-G solvation = -29938.063209 eV Core-core repulsion = 25863.600806 eV Total energy + Delta-G solvation = -4074.462402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.55067 -41.43924 -40.10289 -39.18264 -36.39050 -35.43308 -35.28251 -33.67034 -33.13867 -31.91912 -31.18587 -30.36009 -27.10041 -26.55115 -24.99610 -24.69311 -24.57984 -23.21454 -21.98506 -21.86315 -21.05083 -19.91894 -19.67129 -19.11373 -18.51253 -17.76974 -17.34571 -16.70353 -16.57798 -16.06758 -16.01026 -15.63504 -15.48133 -15.18974 -15.11286 -14.82326 -14.57540 -14.33331 -14.04055 -13.93610 -13.64795 -13.51955 -13.29191 -12.93694 -12.82164 -12.74250 -12.68728 -12.64011 -12.18398 -12.08437 -11.89528 -11.82821 -11.61886 -11.36717 -11.22025 -11.09591 -10.88486 -10.62922 -10.42305 -10.29423 -9.99876 -8.94209 -7.91891 -5.19218 -1.09914 -0.22102 0.96502 1.10092 1.49585 1.50780 1.58829 1.72465 1.88805 2.52851 2.58270 2.67593 3.12440 3.30729 3.37442 3.41807 3.58592 3.72273 3.80926 3.95718 4.10650 4.14770 4.26290 4.32107 4.34211 4.43289 4.49446 4.53538 4.56555 4.60565 4.70416 4.88478 4.92377 5.07582 5.15973 5.17504 5.17779 5.27051 5.32695 5.34572 5.45895 5.49571 5.53267 5.62856 5.63879 6.30777 6.39547 6.44427 6.98196 7.10666 7.38381 8.13829 8.38774 9.31152 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.003143 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.160880 B = 8905.973110 C =11096.245141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.737 5.737 10 C 0.158 3.842 11 C -0.083 4.083 12 H 0.088 0.912 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.118 4.118 17 C 0.163 3.837 18 H 0.065 0.935 19 N -0.699 5.699 20 C 0.552 3.448 21 O -0.550 6.550 22 C -0.038 4.038 23 C -0.111 4.111 24 C 0.176 3.824 25 N -0.462 5.462 26 C 0.207 3.793 27 N -0.382 5.382 28 H 0.474 0.526 29 N -0.010 5.010 30 N -0.259 5.259 31 C -0.025 4.025 32 H 0.251 0.749 33 H 0.377 0.623 34 H 0.000 1.000 35 H 0.029 0.971 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.414 0.586 45 H 0.195 0.805 46 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 -17.286 -12.751 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.032 3.968 11 C -0.103 4.103 12 H 0.107 0.893 13 C -0.144 4.144 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.157 4.157 17 C 0.058 3.942 18 H 0.084 0.916 19 N -0.351 5.351 20 C 0.338 3.662 21 O -0.428 6.428 22 C -0.054 4.054 23 C -0.134 4.134 24 C 0.003 3.997 25 N -0.176 5.176 26 C -0.036 4.036 27 N -0.116 5.116 28 H 0.326 0.674 29 N 0.007 4.993 30 N -0.134 5.134 31 C -0.155 4.155 32 H 0.060 0.940 33 H 0.210 0.790 34 H 0.018 0.982 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.253 0.747 45 H 0.212 0.788 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 6.579 -18.712 -11.698 23.028 hybrid contribution -0.170 1.810 -0.252 1.835 sum 6.409 -16.903 -11.951 21.670 Atomic orbital electron populations 1.69792 1.06326 1.25968 1.59433 1.25434 0.96309 1.00629 1.03774 0.85248 0.77562 0.80029 0.77563 1.21009 1.22359 1.20175 1.19546 0.91252 0.85514 1.41199 0.91315 1.42489 1.05642 1.00698 1.89242 1.20787 0.93674 0.85039 0.97329 1.21431 0.96857 0.92082 0.99893 0.89327 1.21443 0.97939 0.98976 0.96059 1.21537 0.97407 0.93410 1.02688 1.21475 0.98883 0.97887 0.96710 1.21824 0.97481 0.96900 0.99493 1.20883 0.92498 0.94904 0.85935 0.91630 1.45856 1.26522 1.45199 1.17515 1.18171 0.80798 0.80228 0.86984 1.90839 1.68887 1.42472 1.40586 1.19710 0.93064 0.96855 0.95775 1.22962 1.02097 0.96814 0.91523 1.23802 0.85984 0.91762 0.98104 1.66512 1.16292 1.06296 1.28513 1.19974 0.92519 0.98131 0.92987 1.44693 1.22512 1.31240 1.13147 0.67365 1.78154 1.14782 1.15813 0.90567 1.75510 1.02123 1.11072 1.24715 1.20463 0.99608 1.01714 0.93713 0.94006 0.78974 0.98192 0.95271 0.93059 0.92841 0.91207 0.90965 0.92622 0.89992 0.92566 0.89949 0.74720 0.78842 0.74982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.69 13.06 21.65 0.28 -56.40 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 3 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.24 -13.12 9.99 84.03 0.84 -12.28 16 8 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 9 N -0.74 -35.16 5.33 -343.46 -1.83 -36.99 16 10 C 0.16 5.93 5.57 86.38 0.48 6.41 16 11 C -0.08 -2.36 1.80 -10.79 -0.02 -2.38 16 12 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 13 C -0.11 -3.07 5.08 30.60 0.16 -2.92 16 14 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 15 C -0.11 -2.27 5.92 30.59 0.18 -2.09 16 16 C -0.12 -2.56 5.49 30.58 0.17 -2.39 16 17 C 0.16 4.17 1.90 44.98 0.09 4.25 16 18 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 19 N -0.70 -15.84 4.26 -445.47 -1.90 -17.74 16 20 C 0.55 15.35 7.76 86.79 0.67 16.02 16 21 O -0.55 -20.32 15.93 -3.84 -0.06 -20.38 16 22 C -0.04 -0.87 5.92 -19.79 -0.12 -0.99 16 23 C -0.11 -1.39 9.61 22.65 0.22 -1.18 16 24 C 0.18 1.77 11.14 84.82 0.94 2.72 16 25 N -0.46 -7.45 10.35 -193.09 -2.00 -9.45 16 26 C 0.21 4.32 8.56 134.17 1.15 5.46 16 27 N -0.38 -6.78 7.06 -55.48 -0.39 -7.17 16 28 H 0.47 4.03 8.96 -219.83 -1.97 2.06 16 29 N -0.01 -0.26 13.29 37.02 0.49 0.23 16 30 N -0.26 -8.16 11.92 -51.93 -0.62 -8.78 16 31 C -0.02 -0.67 6.97 40.06 0.28 -0.39 16 32 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.38 18.90 6.85 -92.70 -0.64 18.26 16 34 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.03 1.04 7.30 -2.38 -0.02 1.02 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.84 7.18 -2.39 -0.02 1.83 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.41 6.90 6.54 -92.70 -0.61 6.29 16 45 H 0.19 1.06 6.53 -2.91 -0.02 1.04 16 46 H 0.23 0.02 8.06 -2.91 -0.02 -0.01 16 Total: -1.00 -79.84 377.63 -0.47 -80.31 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -2.15 Total: 24.80 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.69 Total: 4.58 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -5.97 Total: -136.30 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -79.84 -0.47 -80.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.065 kcal (2) G-P(sol) polarization free energy of solvation -79.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds