Wall clock time and date at job start Wed Apr 1 2020 04:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48493 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46681 * 299.99915 * 3 2 1 6 6 H 1.48500 * 109.47241 * 59.99926 * 3 2 1 7 7 C 1.38820 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99537 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99364 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46866 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47497 * 304.99717 * 11 10 9 13 13 C 1.53002 * 109.47415 * 65.00069 * 11 10 9 14 14 C 1.53000 * 109.47233 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 C 1.52997 * 109.47232 * 184.99942 * 11 10 9 18 18 H 1.09002 * 109.47153 * 299.99992 * 17 11 10 19 19 N 1.46500 * 109.47007 * 59.99903 * 17 11 10 20 20 C 1.34779 * 119.99793 * 205.00228 * 19 17 11 21 21 O 1.21541 * 120.00170 * 359.97438 * 20 19 17 22 22 C 1.47877 * 119.99679 * 180.02562 * 20 19 17 23 23 C 1.39444 * 121.11911 * 359.71573 * 22 20 19 24 24 C 1.38622 * 119.37985 * 179.74405 * 23 22 20 25 25 N 1.31586 * 121.63188 * 0.56525 * 24 23 22 26 26 C 1.32207 * 121.86782 * 359.70876 * 25 24 23 27 27 N 1.37210 * 134.67705 * 179.97438 * 26 25 24 28 28 H 0.97008 * 125.86549 * 359.97438 * 27 26 25 29 29 N 1.28771 * 108.26744 * 179.97438 * 27 26 25 30 30 N 1.28693 * 111.75575 * 0.02562 * 29 27 26 31 31 C 1.34386 * 109.15505 * 359.97438 * 30 29 27 32 32 H 0.96992 * 119.99693 * 359.97438 * 1 2 3 33 33 H 0.96998 * 120.00618 * 359.97438 * 9 7 2 34 34 H 1.09002 * 109.47101 * 60.00120 * 10 9 7 35 35 H 1.09001 * 109.47363 * 299.99361 * 10 9 7 36 36 H 1.08992 * 109.47063 * 59.99950 * 13 11 10 37 37 H 1.09004 * 109.46733 * 299.99664 * 13 11 10 38 38 H 1.09002 * 109.47398 * 59.99826 * 14 13 11 39 39 H 1.09001 * 109.47194 * 180.02562 * 14 13 11 40 40 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 42 42 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 43 43 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 44 44 H 0.97004 * 120.00223 * 25.00137 * 19 17 11 45 45 H 1.08000 * 120.31158 * 0.02562 * 23 22 20 46 46 H 1.07997 * 119.18623 * 180.27428 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3793 -4.7131 0.8415 13 6 0.2695 -4.8109 -1.3078 14 6 -0.7252 -5.9735 -1.3081 15 6 0.0350 -7.2952 -1.1821 16 6 0.8294 -7.3041 0.1255 17 6 1.8245 -6.1412 0.1256 18 1 2.5089 -6.2479 -0.7160 19 7 2.5850 -6.1496 1.3777 20 6 3.6846 -6.9204 1.4930 21 8 4.0450 -7.6089 0.5585 22 6 4.4520 -6.9294 2.7571 23 6 4.0623 -6.1451 3.8422 24 6 4.8052 -6.1853 5.0119 25 7 5.8785 -6.9384 5.1222 26 6 6.3022 -7.6998 4.1279 27 7 7.3543 -8.5633 3.9547 28 1 8.0321 -8.7732 4.6162 29 7 7.2874 -9.0472 2.7632 30 7 6.2772 -8.5822 2.1156 31 6 5.6041 -7.7266 2.9035 32 1 -0.4849 0.8400 0.0004 33 1 0.3555 -2.3881 0.0005 34 1 2.6847 -3.7145 0.8905 35 1 2.6846 -3.7146 -0.8895 36 1 0.9539 -4.9176 -2.1493 37 1 -0.2726 -3.8695 -1.3973 38 1 -1.4097 -5.8664 -0.4665 39 1 -1.2908 -5.9675 -2.2399 40 1 -0.6734 -8.1235 -1.1828 41 1 0.7195 -7.4023 -2.0237 42 1 1.3714 -8.2455 0.2150 43 1 0.1450 -7.1969 0.9670 44 1 2.2973 -5.6004 2.1237 45 1 3.1874 -5.5157 3.7736 46 1 4.4980 -5.5800 5.8519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322344794.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:56 Heat of formation + Delta-G solvation = 92.454921 kcal Electronic energy + Delta-G solvation = -29936.804517 eV Core-core repulsion = 25863.456681 eV Total energy + Delta-G solvation = -4073.347837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.72933 -40.41057 -39.24514 -38.08949 -34.65587 -34.49840 -34.30106 -32.34533 -31.89020 -31.15031 -29.68658 -29.21966 -25.97463 -25.19436 -24.22956 -23.65497 -23.03148 -22.17899 -20.89684 -20.63855 -20.03716 -19.00316 -18.76283 -17.73423 -17.17525 -16.93451 -16.26364 -15.69336 -15.22413 -15.12125 -14.73960 -14.52671 -14.25612 -13.97939 -13.79011 -13.61474 -13.30383 -13.20250 -13.05533 -12.70960 -12.63834 -12.45442 -11.99516 -11.89232 -11.80418 -11.54933 -11.12363 -10.91725 -10.89925 -10.73824 -10.56684 -10.29280 -10.20695 -10.11354 -9.97041 -9.74164 -9.66954 -9.64916 -9.43733 -8.97868 -8.87009 -6.94228 -5.79704 -3.07870 -0.29896 0.49838 1.78997 1.87424 2.61990 2.85849 3.36224 3.40967 3.42694 3.47606 3.49190 3.87473 4.07270 4.16983 4.39981 4.54788 4.77183 4.80755 4.89179 5.02149 5.09940 5.12763 5.24328 5.33281 5.36636 5.54844 5.57407 5.61918 5.65782 5.72941 5.78976 5.88629 6.08447 6.12476 6.18416 6.22742 6.24156 6.28154 6.37320 6.47577 6.55421 6.66743 6.75442 6.88307 7.09707 7.41008 7.68673 7.83587 8.09813 8.39506 9.51093 10.08504 10.43390 11.43140 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009461 B = 0.003143 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.776946 B = 8906.956657 C =11096.955309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.158 3.842 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.155 3.845 18 H 0.091 0.909 19 N -0.710 5.710 20 C 0.552 3.448 21 O -0.502 6.502 22 C -0.006 4.006 23 C -0.139 4.139 24 C 0.164 3.836 25 N -0.460 5.460 26 C 0.214 3.786 27 N -0.406 5.406 28 H 0.457 0.543 29 N 0.000 5.000 30 N -0.208 5.208 31 C 0.003 3.997 32 H 0.254 0.746 33 H 0.384 0.616 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.401 0.599 45 H 0.162 0.838 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -17.595 10.250 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.030 3.970 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.051 3.949 18 H 0.109 0.891 19 N -0.362 5.362 20 C 0.336 3.664 21 O -0.376 6.376 22 C -0.023 4.023 23 C -0.162 4.162 24 C -0.008 4.008 25 N -0.174 5.174 26 C -0.030 4.030 27 N -0.137 5.137 28 H 0.305 0.695 29 N 0.017 4.983 30 N -0.084 5.084 31 C -0.127 4.127 32 H 0.064 0.936 33 H 0.218 0.782 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.237 0.763 45 H 0.179 0.821 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.026 -18.993 9.182 22.235 hybrid contribution -0.346 1.874 0.946 2.128 sum 6.680 -17.119 10.128 20.982 Atomic orbital electron populations 1.69659 1.05058 1.25517 1.57936 1.24716 0.95500 0.97610 1.03080 0.86151 0.78829 0.84229 0.77202 1.20605 1.21879 1.21881 1.19261 0.91029 0.84179 1.42438 0.91266 1.42367 1.05812 0.99862 1.89455 1.20674 0.93014 0.85354 0.97946 1.21603 0.97707 0.93219 0.99373 0.90578 1.21494 0.97666 0.98893 0.96445 1.21601 0.98070 0.94513 1.01714 1.21486 0.98782 0.97674 0.97358 1.21908 0.97784 0.98408 0.98400 1.21098 0.92695 0.95106 0.86051 0.89080 1.45991 1.27081 1.45489 1.17598 1.17840 0.80867 0.81024 0.86681 1.90867 1.67643 1.40363 1.38759 1.19735 0.92619 0.94492 0.95423 1.22501 1.01966 0.98855 0.92893 1.22891 0.87600 0.93002 0.97309 1.66332 1.15310 1.06304 1.29462 1.19876 0.92324 0.97509 0.93298 1.44698 1.22702 1.32612 1.13658 0.69461 1.78262 1.15045 1.15369 0.89598 1.75582 1.00690 1.09167 1.22979 1.20125 0.98557 1.01184 0.92794 0.93584 0.78198 0.96416 0.96324 0.91971 0.90171 0.92003 0.92071 0.92120 0.91818 0.91690 0.91804 0.76298 0.82095 0.79841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.40 5.33 -59.91 -0.32 -17.72 16 10 C 0.16 2.97 5.56 -4.04 -0.02 2.94 16 11 C -0.10 -1.45 1.80 -90.62 -0.16 -1.61 16 12 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 13 C -0.11 -1.55 5.08 -26.73 -0.14 -1.69 16 14 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.11 -1.26 5.92 -26.73 -0.16 -1.42 16 16 C -0.13 -1.46 5.50 -26.71 -0.15 -1.61 16 17 C 0.15 2.02 1.90 -67.91 -0.13 1.89 16 18 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 19 N -0.71 -8.44 4.26 -54.72 -0.23 -8.68 16 20 C 0.55 7.64 7.76 -12.31 -0.10 7.55 16 21 O -0.50 -8.84 15.93 5.33 0.08 -8.76 16 22 C -0.01 -0.07 5.92 -104.51 -0.62 -0.69 16 23 C -0.14 -1.10 9.61 -38.99 -0.37 -1.48 16 24 C 0.16 1.17 11.14 -17.52 -0.20 0.98 16 25 N -0.46 -4.36 10.35 -12.38 -0.13 -4.49 16 26 C 0.21 2.34 8.56 -156.21 -1.34 1.00 16 27 N -0.41 -3.69 7.06 31.11 0.22 -3.47 16 28 H 0.46 2.16 8.96 -190.25 -1.71 0.45 16 29 N 0.00 0.00 13.29 60.35 0.80 0.80 16 30 N -0.21 -3.13 11.92 32.23 0.38 -2.74 16 31 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.38 9.56 6.85 -40.82 -0.28 9.28 16 34 H 0.02 0.33 7.31 -51.93 -0.38 -0.05 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.36 7.18 -51.93 -0.37 0.99 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.40 3.86 6.54 -40.82 -0.27 3.59 16 45 H 0.16 0.83 6.53 -52.49 -0.34 0.48 16 46 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -35.36 377.64 -9.68 -45.05 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.51 Total: 7.30 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -4.37 Total: -3.35 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 1.45 Total: -62.88 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.36 -9.68 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344794.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.502 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds