Wall clock time and date at job start Wed Apr 1 2020 04:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 C 1.53001 * 109.47238 * 64.99625 * 11 10 9 14 14 C 1.53003 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46963 * 299.99597 * 14 13 11 16 16 C 1.53001 * 109.46923 * 60.00343 * 15 14 13 17 17 C 1.52996 * 109.47238 * 300.00062 * 16 15 14 18 18 H 1.09002 * 109.47682 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.47119 * 299.99906 * 17 16 15 20 20 C 1.34784 * 120.00276 * 275.00139 * 19 17 16 21 21 O 1.21545 * 119.99557 * 359.97438 * 20 19 17 22 22 C 1.47864 * 120.00276 * 180.02562 * 20 19 17 23 23 C 1.39460 * 121.11596 * 359.97438 * 22 20 19 24 24 C 1.38612 * 119.37855 * 179.97438 * 23 22 20 25 25 N 1.31593 * 121.63507 * 0.02562 * 24 23 22 26 26 C 1.32203 * 121.86275 * 359.97438 * 25 24 23 27 27 N 1.37215 * 134.67132 * 180.02562 * 26 25 24 28 28 H 0.97010 * 125.86796 * 359.93615 * 27 26 25 29 29 N 1.28784 * 108.26447 * 179.30634 * 27 26 25 30 30 N 1.28700 * 111.75382 * 0.60436 * 29 27 26 31 31 C 1.34390 * 109.14902 * 359.46523 * 30 29 27 32 32 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 34 34 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 35 35 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 36 36 H 1.09001 * 109.47309 * 300.00020 * 13 11 10 37 37 H 1.08995 * 109.46988 * 60.00458 * 13 11 10 38 38 H 1.08997 * 109.47193 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.47663 * 59.99860 * 14 13 11 40 40 H 1.08994 * 109.47145 * 300.00580 * 15 14 13 41 41 H 1.09001 * 109.47204 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.47309 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.47318 * 59.99630 * 16 15 14 44 44 H 0.97002 * 119.99859 * 95.00085 * 19 17 16 45 45 H 1.08000 * 120.30816 * 359.97438 * 23 22 20 46 46 H 1.07995 * 119.18478 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.3792 -4.7086 0.8538 13 6 0.2694 -4.8177 -1.2949 14 6 -0.7254 -5.9802 -1.2892 15 6 0.0350 -7.3014 -1.1563 16 6 0.8293 -7.3033 0.1513 17 6 1.8239 -6.1408 0.1457 18 1 2.3902 -6.1424 1.0770 19 7 2.7438 -6.2906 -0.9847 20 6 3.8429 -7.0610 -0.8616 21 8 4.0711 -7.6310 0.1874 22 6 4.7716 -7.2118 -2.0022 23 6 4.5327 -6.5680 -3.2161 24 6 5.4276 -6.7341 -4.2615 25 7 6.5003 -7.4864 -4.1389 26 6 6.7820 -8.1222 -3.0146 27 7 7.7952 -8.9509 -2.6028 28 1 8.5527 -9.2326 -3.1394 29 7 7.5747 -9.2799 -1.3774 30 7 6.4894 -8.7524 -0.9298 31 6 5.9307 -8.0054 -1.8972 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 2.6849 -3.7190 -0.8822 35 1 2.6842 -3.7101 0.8977 36 1 -0.2726 -3.8767 -1.3895 37 1 0.9538 -4.9289 -2.1359 38 1 -1.2909 -5.9791 -2.2209 39 1 -1.4097 -5.8688 -0.4482 40 1 0.7193 -7.4128 -1.9973 41 1 -0.6737 -8.1296 -1.1517 42 1 1.3713 -8.2443 0.2458 43 1 0.1449 -7.1917 0.9924 44 1 2.5618 -5.8354 -1.8217 45 1 3.6587 -5.9459 -3.3403 46 1 5.2393 -6.2345 -5.2003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322344795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:01 Heat of formation + Delta-G solvation = 95.679566 kcal Electronic energy + Delta-G solvation = -30236.606805 eV Core-core repulsion = 26163.398800 eV Total energy + Delta-G solvation = -4073.208006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.73584 -40.55839 -39.31631 -38.06908 -34.68678 -34.50925 -33.86455 -32.30554 -31.90722 -31.16049 -29.86695 -29.39935 -26.00767 -25.19477 -24.23967 -23.62997 -23.00355 -22.25311 -21.53601 -20.62228 -19.33679 -19.15037 -18.67417 -17.82924 -17.13988 -16.94337 -15.97056 -15.80018 -15.40255 -15.09693 -14.84113 -14.61459 -14.28952 -14.05373 -13.73596 -13.54737 -13.34645 -13.20980 -13.07936 -12.75279 -12.64706 -12.16880 -12.01416 -11.97970 -11.85463 -11.68088 -11.43320 -10.91393 -10.90402 -10.74252 -10.47177 -10.37461 -10.24528 -10.01775 -9.89315 -9.78366 -9.67967 -9.64011 -9.44639 -8.97696 -8.86237 -6.93819 -5.78739 -3.07070 -0.30786 0.48435 1.78108 1.86792 2.61854 2.87705 3.35853 3.42104 3.42576 3.47550 3.48175 3.86446 4.06487 4.16928 4.38607 4.55622 4.75728 4.80563 4.86710 4.89834 5.08127 5.10605 5.21719 5.30429 5.33790 5.54823 5.57287 5.60888 5.65760 5.72472 5.76141 5.80881 6.02084 6.12073 6.14014 6.20853 6.21854 6.24503 6.33881 6.43768 6.50829 6.64919 6.78354 6.83674 7.08440 7.41506 7.68109 7.82830 8.10745 8.40521 9.51835 10.09277 10.44029 11.43996 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010661 B = 0.003049 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.858914 B = 9182.242587 C =10654.728702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.068 0.932 9 N -0.730 5.730 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.088 0.912 13 C -0.110 4.110 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.156 3.844 18 H 0.091 0.909 19 N -0.705 5.705 20 C 0.551 3.449 21 O -0.503 6.503 22 C -0.005 4.005 23 C -0.140 4.140 24 C 0.164 3.836 25 N -0.460 5.460 26 C 0.214 3.786 27 N -0.407 5.407 28 H 0.457 0.543 29 N 0.000 5.000 30 N -0.208 5.208 31 C 0.003 3.997 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.400 0.600 45 H 0.160 0.840 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.828 -18.807 -10.750 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.121 4.121 12 H 0.106 0.894 13 C -0.148 4.148 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.168 4.168 17 C 0.051 3.949 18 H 0.109 0.891 19 N -0.358 5.358 20 C 0.335 3.665 21 O -0.377 6.377 22 C -0.021 4.021 23 C -0.164 4.164 24 C -0.008 4.008 25 N -0.174 5.174 26 C -0.030 4.030 27 N -0.137 5.137 28 H 0.305 0.695 29 N 0.018 4.982 30 N -0.084 5.084 31 C -0.126 4.126 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.237 0.763 45 H 0.177 0.823 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.186 -20.039 -9.331 23.572 hybrid contribution -0.203 1.735 -1.052 2.039 sum 7.983 -18.305 -10.383 22.508 Atomic orbital electron populations 1.69642 1.05065 1.25759 1.57758 1.24714 0.95502 0.97615 1.03017 0.86288 0.78543 0.83613 0.77863 1.21309 1.21697 1.21290 1.19172 0.90970 0.84214 1.42732 0.91372 1.42353 1.05807 0.99852 1.89469 1.20645 0.92971 0.85347 0.97857 1.21647 0.97861 0.93250 0.99384 0.89409 1.21534 0.97642 0.99103 0.96478 1.21595 0.98074 0.94450 1.01757 1.21499 0.98637 0.97581 0.97632 1.21915 0.97911 0.98540 0.98405 1.21037 0.89598 0.94719 0.89502 0.89051 1.46011 1.23516 1.49032 1.17279 1.17841 0.81179 0.80421 0.87085 1.90868 1.73561 1.45493 1.27759 1.19747 0.92590 0.94724 0.95075 1.22475 1.01876 0.99679 0.92349 1.22876 0.86809 0.91981 0.99143 1.66334 1.20250 1.08147 1.22668 1.19876 0.91826 0.98162 0.93114 1.44708 1.21480 1.36347 1.11148 0.69459 1.78271 1.12135 1.15782 0.92059 1.75591 1.00942 1.08648 1.23184 1.20124 0.97846 1.02184 0.92495 0.93475 0.78189 0.96500 0.96381 0.90144 0.92822 0.92220 0.91821 0.92372 0.92414 0.91608 0.90792 0.76307 0.82281 0.79877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -17.49 5.33 -59.91 -0.32 -17.81 16 10 C 0.16 2.99 5.42 -4.04 -0.02 2.97 16 11 C -0.10 -1.47 2.02 -90.62 -0.18 -1.65 16 12 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 13 C -0.11 -1.42 4.90 -26.73 -0.13 -1.55 16 14 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 15 C -0.12 -1.15 5.77 -26.73 -0.15 -1.31 16 16 C -0.13 -1.46 5.60 -26.73 -0.15 -1.61 16 17 C 0.16 2.01 2.23 -67.93 -0.15 1.85 16 18 H 0.09 1.35 7.57 -51.93 -0.39 0.96 16 19 N -0.70 -8.25 3.58 -54.74 -0.20 -8.45 16 20 C 0.55 7.54 7.76 -12.32 -0.10 7.44 16 21 O -0.50 -8.79 15.93 5.33 0.08 -8.70 16 22 C 0.00 -0.06 5.92 -104.51 -0.62 -0.68 16 23 C -0.14 -1.09 9.61 -38.99 -0.37 -1.47 16 24 C 0.16 1.14 11.14 -17.52 -0.20 0.94 16 25 N -0.46 -4.28 10.35 -12.39 -0.13 -4.41 16 26 C 0.21 2.31 8.56 -156.21 -1.34 0.97 16 27 N -0.41 -3.65 7.06 31.11 0.22 -3.43 16 28 H 0.46 2.11 8.96 -190.24 -1.71 0.41 16 29 N 0.00 0.01 13.29 60.35 0.80 0.81 16 30 N -0.21 -3.10 11.92 32.23 0.38 -2.72 16 31 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.38 9.60 6.85 -40.82 -0.28 9.32 16 34 H 0.02 0.31 7.61 -51.93 -0.40 -0.08 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 1.27 7.18 -51.93 -0.37 0.90 16 37 H 0.05 0.62 6.51 -51.93 -0.34 0.28 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.55 7.60 -51.93 -0.39 0.16 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.40 3.88 4.82 -40.82 -0.20 3.69 16 45 H 0.16 0.79 6.53 -52.49 -0.34 0.45 16 46 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -35.36 373.53 -9.58 -44.94 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.35 Total: 7.08 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -4.41 Total: -3.23 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 1.49 Total: -62.75 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.36 -9.58 -44.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.617 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds