Wall clock time and date at job start Wed Apr 1 2020 04:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99477 * 2 1 4 4 C 1.53008 * 109.46790 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46676 * 64.99864 * 4 3 2 6 6 C 1.42906 * 113.99372 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.52399 * 330.12630 * 6 5 4 8 8 C 1.53097 * 109.51873 * 90.31855 * 6 5 4 9 9 O 1.42902 * 109.41493 * 62.29676 * 8 6 5 10 10 C 1.43035 * 114.13534 * 61.15611 * 9 8 6 11 11 C 1.53091 * 109.34424 * 298.88074 * 10 9 8 12 12 C 1.53174 * 109.51975 * 209.99848 * 6 5 4 13 13 H 1.08995 * 109.54500 * 177.20682 * 12 6 5 14 14 N 1.46506 * 109.54281 * 56.94673 * 12 6 5 15 15 C 1.34777 * 120.00186 * 155.44102 * 14 12 6 16 16 O 1.21349 * 119.99583 * 359.97438 * 15 14 12 17 17 C 1.49446 * 120.00011 * 179.97438 * 15 14 12 18 18 O 1.21353 * 120.00073 * 0.02562 * 17 15 14 19 19 N 1.34777 * 120.00011 * 179.97438 * 17 15 14 20 20 C 1.46502 * 119.99929 * 180.02562 * 19 17 15 21 21 C 1.53005 * 109.46903 * 180.02562 * 20 19 17 22 22 C 1.50701 * 109.46940 * 180.02562 * 21 20 19 23 23 H 1.07994 * 120.00080 * 359.97438 * 22 21 20 24 24 C 1.37875 * 119.99910 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99981 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00031 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47036 * 60.00015 * 26 24 22 28 28 H 1.48496 * 109.47348 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47348 * 299.99819 * 26 24 22 30 30 H 1.08998 * 109.47254 * 60.00344 * 1 2 3 31 31 H 1.09004 * 109.46565 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47379 * 299.99992 * 1 2 3 33 33 H 1.08994 * 109.47470 * 60.00465 * 3 2 1 34 34 H 1.08997 * 109.47031 * 299.99689 * 3 2 1 35 35 H 1.08995 * 109.47024 * 305.00393 * 4 3 2 36 36 H 1.08996 * 109.46810 * 184.99718 * 4 3 2 37 37 H 1.08997 * 109.47580 * 182.27558 * 8 6 5 38 38 H 1.08994 * 109.47934 * 302.30953 * 8 6 5 39 39 H 1.09007 * 109.56642 * 178.88802 * 10 9 8 40 40 H 1.09000 * 109.46222 * 58.81049 * 10 9 8 41 41 H 1.09002 * 109.52401 * 297.63932 * 11 10 9 42 42 H 1.09004 * 109.52068 * 177.51577 * 11 10 9 43 43 H 0.96999 * 119.99985 * 335.44170 * 14 12 6 44 44 H 0.96999 * 119.99828 * 0.02562 * 19 17 15 45 45 H 1.08998 * 109.46692 * 299.99618 * 20 19 17 46 46 H 1.08999 * 109.47375 * 59.99845 * 20 19 17 47 47 H 1.08997 * 109.46859 * 299.99782 * 21 20 19 48 48 H 1.08999 * 109.47395 * 59.99656 * 21 20 19 49 49 H 0.96999 * 120.00367 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3823 0.4198 -1.3220 7 1 5.8792 1.2103 -0.7597 8 6 5.7855 -0.9441 -0.7555 9 8 5.1776 -1.9791 -1.5309 10 6 5.5694 -1.9862 -2.9065 11 6 5.1575 -0.6635 -3.5580 12 6 5.8015 0.4970 -2.7933 13 1 6.8865 0.4251 -2.8675 14 7 5.3528 1.7693 -3.3646 15 6 5.9893 2.2904 -4.4322 16 8 6.9345 1.7061 -4.9198 17 6 5.5312 3.5879 -5.0153 18 8 4.5863 4.1725 -4.5273 19 7 6.1681 4.1093 -6.0825 20 6 5.7193 5.3816 -6.6538 21 6 6.6050 5.7453 -7.8473 22 6 6.1438 7.0543 -8.4346 23 1 5.3029 7.5745 -8.0003 24 6 6.7954 7.5877 -9.5263 25 7 7.8197 6.9545 -10.0548 26 14 6.2233 9.2098 -10.2547 27 1 6.3173 10.2755 -9.2247 28 1 7.0828 9.5630 -11.4129 29 1 4.8144 9.0804 -10.7059 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8508 0.5686 0.8426 36 1 3.9784 2.1767 0.0902 37 1 6.8697 -1.0484 -0.7964 38 1 5.4515 -1.0211 0.2791 39 1 5.0798 -2.8130 -3.4213 40 1 6.6508 -2.1042 -2.9755 41 1 4.0726 -0.5637 -3.5254 42 1 5.4938 -0.6478 -4.5947 43 1 4.5975 2.2366 -2.9746 44 1 6.9236 3.6423 -6.4723 45 1 4.6852 5.2864 -6.9849 46 1 5.7884 6.1638 -5.8979 47 1 7.6392 5.8402 -7.5166 48 1 6.5355 4.9630 -8.6031 49 1 8.2784 7.3299 -10.8226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323341810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:04 Heat of formation + Delta-G solvation = -212.738111 kcal Electronic energy + Delta-G solvation = -30593.290239 eV Core-core repulsion = 26134.813818 eV Total energy + Delta-G solvation = -4458.476421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86490 -39.85227 -38.42414 -38.15300 -37.11042 -35.57675 -34.81722 -32.87856 -31.74411 -31.31767 -29.85025 -29.73733 -26.59022 -26.26852 -24.91394 -23.85555 -23.20471 -22.78138 -21.03977 -20.70191 -20.14971 -18.44268 -17.38502 -17.16601 -17.03635 -16.69857 -16.37402 -16.15182 -15.84585 -15.75914 -15.58580 -15.41741 -15.00006 -14.65615 -14.55792 -14.38702 -14.19761 -13.99246 -13.47861 -13.32090 -13.08006 -12.87728 -12.62936 -12.46932 -12.32907 -11.81565 -11.74561 -11.58306 -11.44595 -11.25446 -11.20484 -11.05996 -11.04516 -10.69661 -10.40548 -10.40261 -10.01688 -9.83270 -9.61887 -9.42859 -9.36011 -9.18521 -8.70928 -8.42682 -6.11057 -4.14898 1.58724 2.46821 3.06889 3.29678 3.33963 3.36542 3.40528 3.41879 3.60004 3.86777 4.14598 4.37712 4.39013 4.42022 4.61998 4.72547 4.75359 4.80649 4.86158 4.90260 4.95616 5.02675 5.06072 5.10666 5.13916 5.20521 5.25637 5.30518 5.36047 5.37936 5.51610 5.64842 5.95720 6.13758 6.16784 6.22316 6.58030 6.64047 6.67889 6.81263 6.94755 7.05991 7.45541 7.56536 7.65648 7.85922 7.90959 8.19947 8.32677 8.90405 9.49916 11.00333 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.001998 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.128718 B =14013.087223 C =15322.337217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.062 3.938 4 C 0.061 3.939 5 O -0.356 6.356 6 C 0.047 3.953 7 H 0.078 0.922 8 C 0.047 3.953 9 O -0.367 6.367 10 C 0.064 3.936 11 C -0.165 4.165 12 C 0.150 3.850 13 H 0.104 0.896 14 N -0.696 5.696 15 C 0.509 3.491 16 O -0.521 6.521 17 C 0.497 3.503 18 O -0.533 6.533 19 N -0.686 5.686 20 C 0.119 3.881 21 C 0.011 3.989 22 C -0.524 4.524 23 H 0.059 0.941 24 C 0.059 3.941 25 N -0.892 5.892 26 Si 0.899 3.101 27 H -0.276 1.276 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.416 0.584 44 H 0.410 0.590 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.025 0.975 48 H 0.025 0.975 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 -17.420 23.182 29.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.015 4.015 4 C -0.016 4.016 5 O -0.275 6.275 6 C -0.012 4.012 7 H 0.096 0.904 8 C -0.031 4.031 9 O -0.285 6.285 10 C -0.013 4.013 11 C -0.203 4.203 12 C 0.045 3.955 13 H 0.121 0.879 14 N -0.350 5.350 15 C 0.290 3.710 16 O -0.396 6.396 17 C 0.277 3.723 18 O -0.411 6.411 19 N -0.337 5.337 20 C -0.003 4.003 21 C -0.026 4.026 22 C -0.563 4.563 23 H 0.078 0.922 24 C -0.143 4.143 25 N -0.530 5.530 26 Si 0.726 3.274 27 H -0.201 1.201 28 H -0.212 1.212 29 H -0.201 1.201 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.253 0.747 44 H 0.246 0.754 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.043 0.957 48 H 0.043 0.957 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.481 -17.733 22.933 29.939 hybrid contribution -0.107 1.489 -0.402 1.546 sum -7.588 -16.244 22.531 28.794 Atomic orbital electron populations 1.22744 0.81086 1.02834 0.99890 1.87981 1.19536 1.27062 1.95376 1.22546 0.92121 0.85668 1.01117 1.22638 0.93757 0.97324 0.87888 1.88069 1.20057 1.81668 1.37677 1.23088 0.83651 0.98402 0.96107 0.90382 1.23010 0.97410 0.86530 0.96175 1.88024 1.69362 1.50836 1.20322 1.22607 0.99319 0.97316 0.82050 1.22558 1.03108 0.94177 1.00503 1.21153 0.99995 0.83646 0.90694 0.87851 1.45705 1.35215 1.22877 1.31165 1.20502 0.83072 0.86402 0.81002 1.90750 1.27296 1.61730 1.59844 1.19956 0.84204 0.85800 0.82389 1.90731 1.27746 1.61627 1.60973 1.46234 1.33632 1.24596 1.29206 1.21937 0.99785 0.81435 0.97129 1.19352 0.94855 0.97383 0.91031 1.20968 1.15767 1.05646 1.13894 0.92228 1.25004 0.94869 0.97747 0.96675 1.69946 1.20701 1.39013 1.23383 0.86548 0.78683 0.83555 0.78592 1.20109 1.21231 1.20102 0.93918 0.89605 0.94287 0.91834 0.92087 0.92329 0.91534 0.91951 0.88235 0.88292 0.92918 0.89557 0.90050 0.74691 0.75389 0.91870 0.91879 0.95671 0.95657 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.76 10.67 -40.09 -0.43 -4.19 16 3 C 0.06 0.48 6.32 37.16 0.23 0.71 16 4 C 0.06 0.44 6.13 37.16 0.23 0.67 16 5 O -0.36 -3.40 8.75 -51.67 -0.45 -3.85 16 6 C 0.05 0.38 2.59 -26.59 -0.07 0.31 16 7 H 0.08 0.50 7.79 -51.93 -0.40 0.10 16 8 C 0.05 0.35 6.49 37.21 0.24 0.59 16 9 O -0.37 -3.71 10.70 -42.72 -0.46 -4.17 16 10 C 0.06 0.56 6.86 37.20 0.26 0.81 16 11 C -0.16 -1.65 5.55 -26.59 -0.15 -1.80 16 12 C 0.15 1.48 2.32 -67.75 -0.16 1.33 16 13 H 0.10 1.03 7.59 -51.93 -0.39 0.63 16 14 N -0.70 -8.25 5.04 -54.06 -0.27 -8.52 16 15 C 0.51 7.53 7.86 -11.59 -0.09 7.44 16 16 O -0.52 -8.50 16.15 5.50 0.09 -8.41 16 17 C 0.50 8.53 7.89 -11.59 -0.09 8.44 16 18 O -0.53 -10.06 16.48 5.49 0.09 -9.97 16 19 N -0.69 -12.44 5.55 -60.73 -0.34 -12.77 16 20 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 21 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 22 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 23 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 24 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 25 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 26 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.38 7.86 -51.93 -0.41 -0.03 16 36 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.64 7.86 -51.93 -0.41 0.24 16 39 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.98 7.83 -51.93 -0.41 0.58 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.42 4.82 7.57 -40.82 -0.31 4.51 16 44 H 0.41 7.09 7.94 -40.82 -0.32 6.76 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 47 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 410.19 15.07 6.18 6.18 Total: -1.00 -33.20 410.19 -7.04 -40.24 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.11 Total: 5.26 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 0.94 Total: 9.29 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.13 Total: -46.57 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.16 Total: -30.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.20 -7.04 -40.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323341810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.498 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds