Wall clock time and date at job start Wed Apr 1 2020 04:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99477 * 2 1 4 4 C 1.53008 * 109.46790 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46676 * 64.99864 * 4 3 2 6 6 C 1.42906 * 113.99372 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.52399 * 330.12630 * 6 5 4 8 8 C 1.53097 * 109.51873 * 90.31855 * 6 5 4 9 9 O 1.42902 * 109.41493 * 62.29676 * 8 6 5 10 10 C 1.43035 * 114.13534 * 61.15611 * 9 8 6 11 11 C 1.53091 * 109.34424 * 298.88074 * 10 9 8 12 12 C 1.53174 * 109.51975 * 209.99848 * 6 5 4 13 13 H 1.08995 * 109.54500 * 177.20682 * 12 6 5 14 14 N 1.46506 * 109.54281 * 56.94673 * 12 6 5 15 15 C 1.34777 * 120.00186 * 155.44102 * 14 12 6 16 16 O 1.21349 * 119.99583 * 359.97438 * 15 14 12 17 17 C 1.49446 * 120.00011 * 179.97438 * 15 14 12 18 18 O 1.21353 * 120.00073 * 0.02562 * 17 15 14 19 19 N 1.34777 * 120.00011 * 179.97438 * 17 15 14 20 20 C 1.46502 * 119.99929 * 180.02562 * 19 17 15 21 21 C 1.53005 * 109.46903 * 180.02562 * 20 19 17 22 22 C 1.50701 * 109.46940 * 180.02562 * 21 20 19 23 23 H 1.07994 * 120.00080 * 359.97438 * 22 21 20 24 24 C 1.37875 * 119.99910 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99981 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00031 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47036 * 60.00015 * 26 24 22 28 28 H 1.48496 * 109.47348 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47348 * 299.99819 * 26 24 22 30 30 H 1.08998 * 109.47254 * 60.00344 * 1 2 3 31 31 H 1.09004 * 109.46565 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47379 * 299.99992 * 1 2 3 33 33 H 1.08994 * 109.47470 * 60.00465 * 3 2 1 34 34 H 1.08997 * 109.47031 * 299.99689 * 3 2 1 35 35 H 1.08995 * 109.47024 * 305.00393 * 4 3 2 36 36 H 1.08996 * 109.46810 * 184.99718 * 4 3 2 37 37 H 1.08997 * 109.47580 * 182.27558 * 8 6 5 38 38 H 1.08994 * 109.47934 * 302.30953 * 8 6 5 39 39 H 1.09007 * 109.56642 * 178.88802 * 10 9 8 40 40 H 1.09000 * 109.46222 * 58.81049 * 10 9 8 41 41 H 1.09002 * 109.52401 * 297.63932 * 11 10 9 42 42 H 1.09004 * 109.52068 * 177.51577 * 11 10 9 43 43 H 0.96999 * 119.99985 * 335.44170 * 14 12 6 44 44 H 0.96999 * 119.99828 * 0.02562 * 19 17 15 45 45 H 1.08998 * 109.46692 * 299.99618 * 20 19 17 46 46 H 1.08999 * 109.47375 * 59.99845 * 20 19 17 47 47 H 1.08997 * 109.46859 * 299.99782 * 21 20 19 48 48 H 1.08999 * 109.47395 * 59.99656 * 21 20 19 49 49 H 0.96999 * 120.00367 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3823 0.4198 -1.3220 7 1 5.8792 1.2103 -0.7597 8 6 5.7855 -0.9441 -0.7555 9 8 5.1776 -1.9791 -1.5309 10 6 5.5694 -1.9862 -2.9065 11 6 5.1575 -0.6635 -3.5580 12 6 5.8015 0.4970 -2.7933 13 1 6.8865 0.4251 -2.8675 14 7 5.3528 1.7693 -3.3646 15 6 5.9893 2.2904 -4.4322 16 8 6.9345 1.7061 -4.9198 17 6 5.5312 3.5879 -5.0153 18 8 4.5863 4.1725 -4.5273 19 7 6.1681 4.1093 -6.0825 20 6 5.7193 5.3816 -6.6538 21 6 6.6050 5.7453 -7.8473 22 6 6.1438 7.0543 -8.4346 23 1 5.3029 7.5745 -8.0003 24 6 6.7954 7.5877 -9.5263 25 7 7.8197 6.9545 -10.0548 26 14 6.2233 9.2098 -10.2547 27 1 6.3173 10.2755 -9.2247 28 1 7.0828 9.5630 -11.4129 29 1 4.8144 9.0804 -10.7059 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8508 0.5686 0.8426 36 1 3.9784 2.1767 0.0902 37 1 6.8697 -1.0484 -0.7964 38 1 5.4515 -1.0211 0.2791 39 1 5.0798 -2.8130 -3.4213 40 1 6.6508 -2.1042 -2.9755 41 1 4.0726 -0.5637 -3.5254 42 1 5.4938 -0.6478 -4.5947 43 1 4.5975 2.2366 -2.9746 44 1 6.9236 3.6423 -6.4723 45 1 4.6852 5.2864 -6.9849 46 1 5.7884 6.1638 -5.8979 47 1 7.6392 5.8402 -7.5166 48 1 6.5355 4.9630 -8.6031 49 1 8.2784 7.3299 -10.8226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323341810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:03 Heat of formation + Delta-G solvation = -238.827445 kcal Electronic energy + Delta-G solvation = -30594.421558 eV Core-core repulsion = 26134.813818 eV Total energy + Delta-G solvation = -4459.607740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93531 -40.83041 -39.50526 -38.96722 -37.76483 -36.95787 -36.10144 -34.82554 -32.63705 -31.93536 -31.69491 -30.37448 -27.68520 -27.13626 -26.31328 -24.55249 -24.40878 -23.47779 -22.79419 -21.52035 -21.36785 -19.68914 -18.59304 -18.12974 -17.91857 -17.66616 -17.53215 -17.18608 -16.91852 -16.55702 -16.51140 -16.34504 -16.25437 -16.07946 -15.68201 -15.52280 -15.16753 -14.84227 -14.65753 -14.56921 -14.30634 -13.98244 -13.68462 -13.28007 -13.26074 -13.05027 -12.93308 -12.87747 -12.55164 -12.44966 -12.33506 -12.27824 -12.10478 -11.91467 -11.73528 -11.68598 -11.46141 -11.05229 -10.76562 -10.61417 -10.61268 -10.35786 -10.21137 -10.16268 -8.23565 -6.34898 0.28755 1.25401 1.43302 1.45335 1.53460 2.08392 2.38843 2.47946 2.62554 2.88598 3.01904 3.11198 3.39587 3.47134 3.68416 3.79968 4.03465 4.07809 4.22681 4.25123 4.32322 4.37783 4.38518 4.44090 4.46209 4.51003 4.54351 4.59866 4.63753 4.70211 4.74792 4.80148 4.82663 4.87309 4.94950 5.05701 5.06591 5.22944 5.41550 5.54243 5.74699 5.89251 6.05849 6.12402 6.24755 6.33029 6.35223 6.67028 6.78742 6.90097 7.34509 8.88135 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.001998 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.128718 B =14013.087223 C =15322.337217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.057 3.943 4 C 0.056 3.944 5 O -0.379 6.379 6 C 0.050 3.950 7 H 0.100 0.900 8 C 0.043 3.957 9 O -0.389 6.389 10 C 0.067 3.933 11 C -0.159 4.159 12 C 0.145 3.855 13 H 0.108 0.892 14 N -0.679 5.679 15 C 0.517 3.483 16 O -0.537 6.537 17 C 0.499 3.501 18 O -0.549 6.549 19 N -0.688 5.688 20 C 0.138 3.862 21 C 0.019 3.981 22 C -0.545 4.545 23 H 0.065 0.935 24 C 0.004 3.996 25 N -0.927 5.927 26 Si 0.968 3.032 27 H -0.266 1.266 28 H -0.283 1.283 29 H -0.268 1.268 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.419 0.581 44 H 0.415 0.585 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.008 0.992 48 H 0.007 0.993 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 -17.225 24.708 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.019 4.019 4 C -0.020 4.020 5 O -0.299 6.299 6 C -0.009 4.009 7 H 0.117 0.883 8 C -0.034 4.034 9 O -0.307 6.307 10 C -0.010 4.010 11 C -0.198 4.198 12 C 0.041 3.959 13 H 0.126 0.874 14 N -0.332 5.332 15 C 0.297 3.703 16 O -0.414 6.414 17 C 0.280 3.720 18 O -0.427 6.427 19 N -0.339 5.339 20 C 0.015 3.985 21 C -0.019 4.019 22 C -0.584 4.584 23 H 0.083 0.917 24 C -0.195 4.195 25 N -0.567 5.567 26 Si 0.792 3.208 27 H -0.191 1.191 28 H -0.209 1.209 29 H -0.192 1.192 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.256 0.744 44 H 0.251 0.749 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.027 0.973 48 H 0.025 0.975 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.827 -17.561 24.502 31.145 hybrid contribution -0.047 1.376 -0.812 1.599 sum -7.875 -16.185 23.689 29.751 Atomic orbital electron populations 1.22870 0.79991 1.03489 1.00611 1.87934 1.20960 1.28460 1.95555 1.22704 0.92477 0.85029 1.01702 1.22813 0.93555 0.98336 0.87299 1.88046 1.20784 1.82108 1.38931 1.23121 0.83408 0.99632 0.94712 0.88255 1.23200 0.98539 0.85384 0.96284 1.87995 1.70137 1.51784 1.20817 1.22642 1.00264 0.96500 0.81625 1.22476 1.01924 0.95317 1.00114 1.21385 1.00252 0.82224 0.91991 0.87374 1.45694 1.34439 1.23249 1.29786 1.19963 0.83182 0.85435 0.81678 1.90753 1.28149 1.61880 1.60618 1.20336 0.83552 0.86452 0.81661 1.90719 1.28373 1.62336 1.61313 1.46067 1.34081 1.23940 1.29800 1.21482 0.98599 0.82709 0.95688 1.19173 0.94603 0.96172 0.91920 1.21414 1.15980 1.06704 1.14290 0.91711 1.25925 0.94903 1.01489 0.97144 1.70068 1.21885 1.40792 1.23938 0.85454 0.78404 0.79073 0.77846 1.19134 1.20880 1.19243 0.94051 0.89095 0.92669 0.89625 0.93055 0.91499 0.89676 0.89943 0.87115 0.87665 0.91415 0.91268 0.91173 0.74357 0.74888 0.92144 0.91923 0.97328 0.97459 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -7.80 10.67 -144.34 -1.54 -9.34 16 3 C 0.06 0.81 6.32 71.98 0.45 1.26 16 4 C 0.06 0.71 6.13 71.98 0.44 1.15 16 5 O -0.38 -6.73 8.75 -133.27 -1.17 -7.90 16 6 C 0.05 0.71 2.59 30.69 0.08 0.79 16 7 H 0.10 0.98 7.79 -2.39 -0.02 0.96 16 8 C 0.04 0.55 6.49 72.01 0.47 1.02 16 9 O -0.39 -7.27 10.70 -141.82 -1.52 -8.78 16 10 C 0.07 1.07 6.86 72.01 0.49 1.57 16 11 C -0.16 -3.11 5.55 30.68 0.17 -2.94 16 12 C 0.15 2.67 2.32 45.11 0.10 2.78 16 13 H 0.11 1.95 7.59 -2.39 -0.02 1.93 16 14 N -0.68 -15.35 5.04 -443.31 -2.24 -17.59 16 15 C 0.52 14.92 7.86 87.27 0.69 15.60 16 16 O -0.54 -17.15 16.15 -3.24 -0.05 -17.20 16 17 C 0.50 16.90 7.89 87.27 0.69 17.59 16 18 O -0.55 -20.34 16.48 -3.26 -0.05 -20.40 16 19 N -0.69 -24.95 5.55 -464.40 -2.58 -27.53 16 20 C 0.14 5.76 5.61 86.38 0.48 6.25 16 21 C 0.02 0.95 5.09 29.85 0.15 1.10 16 22 C -0.55 -30.01 9.11 25.60 0.23 -29.78 16 23 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 24 C 0.00 0.23 5.46 84.65 0.46 0.70 16 25 N -0.93 -54.64 13.29 21.45 0.28 -54.36 16 26 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 28 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 30 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 1.03 8.14 -2.38 -0.02 1.02 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.73 7.86 -2.39 -0.02 0.71 16 36 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 1.16 7.86 -2.39 -0.02 1.14 16 39 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.58 7.83 -2.39 -0.02 1.56 16 42 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.42 9.23 7.57 -92.71 -0.70 8.52 16 44 H 0.41 14.45 7.94 -92.71 -0.74 13.71 16 45 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -70.60 410.19 -1.14 -71.74 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.48 Total: 27.44 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.17 Total: 18.68 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -4.53 Total: -99.48 kcal Atomic # 8 Polarization: -59.30 SS G_CDS: -4.33 Total: -63.62 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.60 -1.14 -71.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323341810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.087 kcal (2) G-P(sol) polarization free energy of solvation -70.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds