Wall clock time and date at job start Wed Apr 1 2020 04:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47457 * 300.00162 * 3 2 1 6 6 H 1.48495 * 109.47203 * 60.00252 * 3 2 1 7 7 C 1.37882 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46947 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47082 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00155 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00157 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00010 * 180.02562 * 12 11 10 15 15 C 1.53123 * 109.52365 * 180.02562 * 14 12 11 16 16 C 1.53036 * 109.27788 * 182.44137 * 15 14 12 17 17 N 1.46846 * 109.52384 * 59.18000 * 16 15 14 18 18 C 1.39095 * 110.99987 * 174.15878 * 17 16 15 19 19 C 1.40864 * 119.58851 * 179.97438 * 18 17 16 20 20 C 1.35917 * 120.09760 * 180.02562 * 19 18 17 21 21 C 1.40792 * 119.13348 * 359.97438 * 20 19 18 22 22 N 1.32364 * 133.77817 * 179.97438 * 21 20 19 23 23 N 1.28751 * 109.23300 * 180.02562 * 22 21 20 24 24 C 1.31032 * 110.16979 * 0.02562 * 23 22 21 25 25 N 1.34992 * 107.68033 * 359.97438 * 24 23 22 26 26 N 1.31248 * 119.58660 * 359.72799 * 18 17 16 27 27 C 1.46842 * 111.19700 * 298.25435 * 17 16 15 28 28 C 1.53041 * 109.52407 * 61.74724 * 27 17 16 29 29 H 0.97004 * 119.99625 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47394 * 59.99444 * 9 7 2 31 31 H 1.09001 * 109.46370 * 299.99522 * 9 7 2 32 32 H 1.08996 * 109.47682 * 59.99431 * 10 9 7 33 33 H 1.09004 * 109.46797 * 299.99388 * 10 9 7 34 34 H 0.97008 * 120.00140 * 0.02562 * 11 10 9 35 35 H 1.09000 * 109.57489 * 300.15983 * 14 12 11 36 36 H 1.09000 * 109.50367 * 62.49682 * 15 14 12 37 37 H 1.09006 * 109.50264 * 302.38021 * 15 14 12 38 38 H 1.08999 * 109.46075 * 179.19317 * 16 15 14 39 39 H 1.08998 * 109.46309 * 299.16289 * 16 15 14 40 40 H 1.08006 * 119.95502 * 0.02562 * 19 18 17 41 41 H 1.07998 * 120.42875 * 179.97438 * 20 19 18 42 42 H 1.07997 * 126.15655 * 179.97438 * 24 23 22 43 43 H 1.09006 * 109.46447 * 181.75636 * 27 17 16 44 44 H 1.08994 * 109.46873 * 301.72670 * 27 17 16 45 45 H 1.08997 * 109.50282 * 60.75542 * 28 27 17 46 46 H 1.08999 * 109.50511 * 180.87834 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 2.1866 -6.0980 -0.0024 13 8 3.3994 -6.0980 -0.0019 14 6 1.4331 -7.4031 -0.0035 15 6 2.4271 -8.5679 -0.0031 16 6 1.6572 -9.8890 -0.0658 17 7 0.8374 -9.9220 -1.2837 18 6 0.2257 -11.1615 -1.4393 19 6 -0.6063 -11.3916 -2.5524 20 6 -1.2097 -12.5987 -2.7144 21 6 -0.9904 -13.6084 -1.7581 22 7 -1.4168 -14.8548 -1.6281 23 7 -0.9164 -15.3646 -0.5570 24 6 -0.1548 -14.4867 0.0482 25 7 -0.1740 -13.3531 -0.6845 26 7 0.4347 -12.1036 -0.5497 27 6 -0.1563 -8.8409 -1.2843 28 6 0.5594 -7.4884 -1.2581 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6241 -2.5574 0.8881 32 1 2.8713 -3.6047 0.8889 33 1 2.8725 -3.6039 -0.8910 34 1 0.5427 -4.9308 -0.0028 35 1 0.8033 -7.4619 0.8842 36 1 3.0235 -8.5370 0.9087 37 1 3.0826 -8.4872 -0.8703 38 1 2.3625 -10.7199 -0.0801 39 1 1.0122 -9.9753 0.8086 40 1 -0.7651 -10.6077 -3.2783 41 1 -1.8490 -12.7808 -3.5656 42 1 0.3901 -14.6422 0.9676 43 1 -0.7682 -8.9105 -2.1837 44 1 -0.7928 -8.9321 -0.4042 45 1 1.1855 -7.3908 -2.1449 46 1 -0.1786 -6.6864 -1.2428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323715929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:51 Heat of formation + Delta-G solvation = 106.816816 kcal Electronic energy + Delta-G solvation = -28746.865766 eV Core-core repulsion = 24674.140708 eV Total energy + Delta-G solvation = -4072.725058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.74719 -40.98439 -39.53689 -37.81238 -35.02195 -34.53313 -34.23025 -32.91283 -31.66370 -31.15007 -30.39645 -29.61783 -26.60571 -25.32650 -24.53575 -23.52015 -23.21928 -22.71113 -21.28599 -20.80632 -19.78734 -19.25157 -18.38894 -17.63312 -17.04868 -16.94964 -16.41252 -15.87399 -15.45645 -15.33898 -15.27564 -14.93810 -14.56051 -14.42948 -14.33509 -13.96581 -13.72292 -13.58552 -13.25486 -12.92561 -12.66103 -12.61358 -12.36760 -11.99857 -11.81371 -11.66205 -11.44338 -11.27286 -11.18086 -11.10309 -11.03815 -10.85563 -10.70263 -10.66327 -10.41780 -9.86063 -9.51987 -9.32644 -9.23394 -9.14966 -8.63295 -8.43894 -6.16253 -4.19102 -0.23072 0.60660 1.19118 2.13541 2.52289 2.78281 2.85528 3.23548 3.31417 3.35724 3.44968 3.51460 3.53623 3.92595 4.22423 4.23552 4.27607 4.36130 4.45534 4.53061 4.69375 4.76730 4.85861 4.95678 4.99098 5.04862 5.08491 5.11012 5.21215 5.21560 5.28384 5.38516 5.43631 5.53167 5.66339 5.81907 6.01621 6.05779 6.25214 6.25701 6.26478 6.65116 6.81090 6.96734 7.43402 7.52975 7.81793 7.90055 7.95496 8.20259 8.53585 8.87102 9.46286 10.95271 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.032762 B = 0.001649 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.432071 B =16972.691923 C =17465.377222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.721 5.721 12 C 0.510 3.490 13 O -0.547 6.547 14 C -0.114 4.114 15 C -0.098 4.098 16 C 0.057 3.943 17 N -0.453 5.453 18 C 0.349 3.651 19 C -0.156 4.156 20 C 0.005 3.995 21 C 0.126 3.874 22 N -0.253 5.253 23 N -0.265 5.265 24 C 0.182 3.818 25 N -0.283 5.283 26 N -0.310 5.310 27 C 0.059 3.941 28 C -0.110 4.110 29 H 0.262 0.738 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.230 0.770 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -24.539 -3.393 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.371 5.371 12 C 0.295 3.705 13 O -0.425 6.425 14 C -0.135 4.135 15 C -0.137 4.137 16 C -0.069 4.069 17 N -0.173 5.173 18 C 0.084 3.916 19 C -0.184 4.184 20 C -0.023 4.023 21 C -0.128 4.128 22 N -0.102 5.102 23 N -0.109 5.109 24 C -0.104 4.104 25 N -0.060 5.060 26 N -0.133 5.133 27 C -0.066 4.066 28 C -0.148 4.148 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.230 0.770 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.183 0.817 41 H 0.189 0.811 42 H 0.246 0.754 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.233 -25.786 -3.146 26.177 hybrid contribution -0.157 2.090 0.222 2.107 sum -3.390 -23.696 -2.923 24.115 Atomic orbital electron populations 1.69957 1.06092 1.26815 1.50401 1.24995 0.94897 0.99443 0.94929 0.86461 0.80183 0.83303 0.77654 1.19572 1.20908 1.20917 1.21089 0.93295 0.90375 1.51331 0.92198 1.19326 0.94194 0.91185 0.97806 1.21732 0.96060 0.81535 1.00813 1.46360 1.10468 1.06628 1.73603 1.20358 0.88122 0.85276 0.76714 1.90686 1.13984 1.87713 1.50164 1.21458 0.98106 0.93961 1.00010 1.21472 0.97070 0.90309 1.04802 1.22267 0.96545 0.99887 0.88242 1.59190 1.20696 0.98705 1.38720 1.20992 0.88837 0.91541 0.90242 1.21432 0.98825 0.99156 0.98962 1.20467 0.96719 0.88662 0.96436 1.22617 0.99560 0.96973 0.93668 1.74999 1.20242 1.03047 1.11884 1.74601 1.09707 1.23772 1.02813 1.26265 1.03479 0.79599 1.01022 1.47383 1.30662 1.09739 1.18174 1.75817 1.24108 0.89988 1.23339 1.22395 0.92114 0.88907 1.03190 1.21659 0.99323 0.95440 0.98423 0.92873 0.95938 0.95982 0.92584 0.92525 0.76979 0.88603 0.89669 0.89727 0.88827 0.92321 0.81679 0.81067 0.75419 0.88585 0.92261 0.89553 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.40 5.61 -4.05 -0.02 2.38 16 11 N -0.72 -11.03 5.46 -60.30 -0.33 -11.36 16 12 C 0.51 7.38 7.15 -10.98 -0.08 7.30 16 13 O -0.55 -10.20 15.98 5.56 0.09 -10.11 16 14 C -0.11 -1.06 2.59 -91.64 -0.24 -1.30 16 15 C -0.10 -0.90 4.68 -26.65 -0.12 -1.02 16 16 C 0.06 0.43 4.65 -3.83 -0.02 0.41 16 17 N -0.45 -3.13 4.68 -172.96 -0.81 -3.94 16 18 C 0.35 2.59 6.51 -155.24 -1.01 1.58 16 19 C -0.16 -0.82 9.11 -39.42 -0.36 -1.18 16 20 C 0.01 0.03 10.11 -39.45 -0.40 -0.37 16 21 C 0.13 1.24 7.99 -156.08 -1.25 -0.01 16 22 N -0.25 -3.02 12.33 31.13 0.38 -2.64 16 23 N -0.27 -3.07 12.21 29.68 0.36 -2.70 16 24 C 0.18 1.63 13.16 -89.98 -1.18 0.45 16 25 N -0.28 -2.78 4.02 -13.40 -0.05 -2.83 16 26 N -0.31 -2.82 10.23 31.32 0.32 -2.50 16 27 C 0.06 0.32 5.25 -3.83 -0.02 0.30 16 28 C -0.11 -0.77 5.26 -26.65 -0.14 -0.91 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.40 5.06 7.96 -40.82 -0.33 4.74 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 38 H 0.09 0.75 7.70 -51.93 -0.40 0.35 16 39 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 40 H 0.17 0.37 7.14 -52.48 -0.37 0.00 16 41 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.23 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.10 0.31 6.66 -51.93 -0.35 -0.04 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.09 0.55 7.67 -51.93 -0.40 0.15 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -34.85 381.37 -10.42 -45.27 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.45 Total: -1.13 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -5.39 Total: -5.04 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.61 Total: -50.54 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.85 -10.42 -45.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323715929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.088 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds