Wall clock time and date at job start Wed Apr 1 2020 04:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47457 * 300.00162 * 3 2 1 6 6 H 1.48495 * 109.47203 * 60.00252 * 3 2 1 7 7 C 1.37882 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46947 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47082 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00155 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00157 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00010 * 180.02562 * 12 11 10 15 15 C 1.53123 * 109.52365 * 180.02562 * 14 12 11 16 16 C 1.53036 * 109.27788 * 182.44137 * 15 14 12 17 17 N 1.46846 * 109.52384 * 59.18000 * 16 15 14 18 18 C 1.39095 * 110.99987 * 174.15878 * 17 16 15 19 19 C 1.40864 * 119.58851 * 179.97438 * 18 17 16 20 20 C 1.35917 * 120.09760 * 180.02562 * 19 18 17 21 21 C 1.40792 * 119.13348 * 359.97438 * 20 19 18 22 22 N 1.32364 * 133.77817 * 179.97438 * 21 20 19 23 23 N 1.28751 * 109.23300 * 180.02562 * 22 21 20 24 24 C 1.31032 * 110.16979 * 0.02562 * 23 22 21 25 25 N 1.34992 * 107.68033 * 359.97438 * 24 23 22 26 26 N 1.31248 * 119.58660 * 359.72799 * 18 17 16 27 27 C 1.46842 * 111.19700 * 298.25435 * 17 16 15 28 28 C 1.53041 * 109.52407 * 61.74724 * 27 17 16 29 29 H 0.97004 * 119.99625 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47394 * 59.99444 * 9 7 2 31 31 H 1.09001 * 109.46370 * 299.99522 * 9 7 2 32 32 H 1.08996 * 109.47682 * 59.99431 * 10 9 7 33 33 H 1.09004 * 109.46797 * 299.99388 * 10 9 7 34 34 H 0.97008 * 120.00140 * 0.02562 * 11 10 9 35 35 H 1.09000 * 109.57489 * 300.15983 * 14 12 11 36 36 H 1.09000 * 109.50367 * 62.49682 * 15 14 12 37 37 H 1.09006 * 109.50264 * 302.38021 * 15 14 12 38 38 H 1.08999 * 109.46075 * 179.19317 * 16 15 14 39 39 H 1.08998 * 109.46309 * 299.16289 * 16 15 14 40 40 H 1.08006 * 119.95502 * 0.02562 * 19 18 17 41 41 H 1.07998 * 120.42875 * 179.97438 * 20 19 18 42 42 H 1.07997 * 126.15655 * 179.97438 * 24 23 22 43 43 H 1.09006 * 109.46447 * 181.75636 * 27 17 16 44 44 H 1.08994 * 109.46873 * 301.72670 * 27 17 16 45 45 H 1.08997 * 109.50282 * 60.75542 * 28 27 17 46 46 H 1.08999 * 109.50511 * 180.87834 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 2.1866 -6.0980 -0.0024 13 8 3.3994 -6.0980 -0.0019 14 6 1.4331 -7.4031 -0.0035 15 6 2.4271 -8.5679 -0.0031 16 6 1.6572 -9.8890 -0.0658 17 7 0.8374 -9.9220 -1.2837 18 6 0.2257 -11.1615 -1.4393 19 6 -0.6063 -11.3916 -2.5524 20 6 -1.2097 -12.5987 -2.7144 21 6 -0.9904 -13.6084 -1.7581 22 7 -1.4168 -14.8548 -1.6281 23 7 -0.9164 -15.3646 -0.5570 24 6 -0.1548 -14.4867 0.0482 25 7 -0.1740 -13.3531 -0.6845 26 7 0.4347 -12.1036 -0.5497 27 6 -0.1563 -8.8409 -1.2843 28 6 0.5594 -7.4884 -1.2581 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6241 -2.5574 0.8881 32 1 2.8713 -3.6047 0.8889 33 1 2.8725 -3.6039 -0.8910 34 1 0.5427 -4.9308 -0.0028 35 1 0.8033 -7.4619 0.8842 36 1 3.0235 -8.5370 0.9087 37 1 3.0826 -8.4872 -0.8703 38 1 2.3625 -10.7199 -0.0801 39 1 1.0122 -9.9753 0.8086 40 1 -0.7651 -10.6077 -3.2783 41 1 -1.8490 -12.7808 -3.5656 42 1 0.3901 -14.6422 0.9676 43 1 -0.7682 -8.9105 -2.1837 44 1 -0.7928 -8.9321 -0.4042 45 1 1.1855 -7.3908 -2.1449 46 1 -0.1786 -6.6864 -1.2428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323715929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:50 Heat of formation + Delta-G solvation = 84.615847 kcal Electronic energy + Delta-G solvation = -28747.828473 eV Core-core repulsion = 24674.140708 eV Total energy + Delta-G solvation = -4073.687764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.39891 -41.67061 -40.56892 -38.53680 -36.59638 -35.23673 -34.91657 -34.69611 -32.27830 -32.02977 -31.16941 -30.99923 -27.59411 -26.43447 -25.59456 -24.20506 -23.88558 -23.35946 -22.87544 -21.85860 -20.72054 -19.84181 -18.96254 -18.60636 -18.25653 -17.78408 -17.70265 -16.69425 -16.60133 -16.46386 -16.27934 -15.95377 -15.56137 -15.35191 -14.98432 -14.80921 -14.63169 -14.45142 -14.25338 -14.08300 -13.92801 -13.35176 -13.30102 -13.18214 -12.94835 -12.71943 -12.52872 -12.42153 -12.29588 -12.23068 -12.07331 -11.86293 -11.72998 -11.61712 -11.49074 -11.41696 -11.29278 -10.68146 -10.60006 -9.97761 -9.87430 -9.76359 -8.24001 -6.33595 -0.72127 0.03558 0.59211 1.40748 1.42778 1.48315 1.54821 1.68999 1.95470 2.23291 2.27820 2.46476 2.91567 3.01454 3.11178 3.46072 3.53818 3.66657 3.71945 3.80430 4.00347 4.07413 4.18079 4.24313 4.31672 4.35629 4.47951 4.51277 4.53421 4.57039 4.62942 4.69370 4.75025 4.80066 4.88094 4.89526 4.94537 5.06001 5.18587 5.28230 5.34231 5.50335 5.52442 5.60858 5.70097 5.80532 6.17944 6.39318 6.67835 6.79968 7.26312 7.33513 7.35841 8.87621 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.032762 B = 0.001649 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.432071 B =16972.691923 C =17465.377222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.715 5.715 12 C 0.510 3.490 13 O -0.592 6.592 14 C -0.103 4.103 15 C -0.093 4.093 16 C 0.067 3.933 17 N -0.455 5.455 18 C 0.346 3.654 19 C -0.140 4.140 20 C -0.002 4.002 21 C 0.121 3.879 22 N -0.293 5.293 23 N -0.300 5.300 24 C 0.183 3.817 25 N -0.293 5.293 26 N -0.330 5.330 27 C 0.060 3.940 28 C -0.107 4.107 29 H 0.265 0.735 30 H 0.012 0.988 31 H 0.009 0.991 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.411 0.589 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.203 0.797 41 H 0.202 0.798 42 H 0.260 0.740 43 H 0.127 0.873 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.967 -24.140 -4.112 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.366 5.366 12 C 0.297 3.703 13 O -0.473 6.473 14 C -0.124 4.124 15 C -0.131 4.131 16 C -0.060 4.060 17 N -0.175 5.175 18 C 0.081 3.919 19 C -0.167 4.167 20 C -0.030 4.030 21 C -0.135 4.135 22 N -0.140 5.140 23 N -0.142 5.142 24 C -0.103 4.103 25 N -0.070 5.070 26 N -0.154 5.154 27 C -0.065 4.065 28 C -0.145 4.145 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.248 0.752 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.220 0.780 41 H 0.219 0.781 42 H 0.276 0.724 43 H 0.145 0.855 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.147 -25.414 -3.870 26.040 hybrid contribution 0.181 2.027 0.452 2.084 sum -3.966 -23.388 -3.418 23.967 Atomic orbital electron populations 1.70045 1.07379 1.27867 1.51071 1.25809 0.95772 1.02879 0.94494 0.85453 0.78975 0.79085 0.77876 1.19155 1.20226 1.20341 1.21511 0.93523 0.92122 1.51381 0.92572 1.19133 0.94218 0.91609 0.96516 1.21180 0.95035 0.82633 0.99551 1.46154 1.11108 1.05488 1.73844 1.21262 0.87803 0.86358 0.74828 1.90669 1.16272 1.88395 1.51928 1.21474 0.98068 0.90333 1.02538 1.21373 0.96954 0.91291 1.03495 1.22092 0.96536 0.98323 0.89021 1.59217 1.21096 0.99047 1.38106 1.21284 0.88727 0.91183 0.90661 1.21791 0.96959 0.99597 0.98389 1.20909 0.97500 0.87961 0.96617 1.23215 0.98966 0.97016 0.94302 1.74889 1.21909 1.04477 1.12748 1.74498 1.11112 1.25113 1.03506 1.26870 1.02760 0.79123 1.01533 1.47514 1.30943 1.10145 1.18358 1.75797 1.24972 0.90033 1.24574 1.22524 0.91663 0.86895 1.05369 1.21664 0.99121 0.97309 0.96373 0.92568 0.96925 0.97250 0.94001 0.93731 0.75226 0.86203 0.90671 0.91618 0.89495 0.91591 0.77983 0.78067 0.72389 0.85512 0.91092 0.90565 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.21 13.29 21.45 0.28 -51.93 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.96 42.41 29.54 68.60 2.03 44.43 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.55 -29.52 9.11 25.60 0.23 -29.29 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.02 1.08 5.09 29.85 0.15 1.23 16 10 C 0.14 5.61 5.61 86.38 0.48 6.09 16 11 N -0.72 -21.32 5.46 -463.07 -2.53 -23.85 16 12 C 0.51 14.35 7.15 87.66 0.63 14.98 16 13 O -0.59 -22.27 15.98 -3.02 -0.05 -22.31 16 14 C -0.10 -1.71 2.59 -11.46 -0.03 -1.73 16 15 C -0.09 -1.60 4.68 30.65 0.14 -1.46 16 16 C 0.07 0.88 4.65 86.33 0.40 1.28 16 17 N -0.45 -4.91 4.68 -701.12 -3.28 -8.19 16 18 C 0.35 4.13 6.51 133.80 0.87 5.01 16 19 C -0.14 -0.95 9.11 22.37 0.20 -0.74 16 20 C 0.00 -0.02 10.11 22.36 0.23 0.20 16 21 C 0.12 2.26 7.99 134.06 1.07 3.33 16 22 N -0.29 -7.05 12.33 -55.42 -0.68 -7.73 16 23 N -0.30 -7.07 12.21 -60.02 -0.73 -7.80 16 24 C 0.18 3.24 13.16 180.12 2.37 5.61 16 25 N -0.29 -5.47 4.02 -196.32 -0.79 -6.26 16 26 N -0.33 -5.42 10.23 -54.82 -0.56 -5.99 16 27 C 0.06 0.39 5.25 86.33 0.45 0.84 16 28 C -0.11 -1.16 5.26 30.65 0.16 -1.00 16 29 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 30 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.41 9.84 7.96 -92.70 -0.74 9.10 16 35 H 0.12 1.49 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.39 8.04 -2.38 -0.02 1.37 16 38 H 0.09 1.29 7.70 -2.39 -0.02 1.28 16 39 H 0.07 0.80 8.11 -2.39 -0.02 0.78 16 40 H 0.20 -0.21 7.14 -2.91 -0.02 -0.24 16 41 H 0.20 0.52 8.06 -2.91 -0.02 0.49 16 42 H 0.26 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.13 0.11 6.66 -2.38 -0.02 0.10 16 44 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.10 0.88 7.67 -2.39 -0.02 0.87 16 Total: -1.00 -78.07 381.37 1.79 -76.28 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.28 Total: 8.03 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 7.83 Total: 5.32 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -8.29 Total: -111.75 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -78.07 1.79 -76.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323715929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.898 kcal (2) G-P(sol) polarization free energy of solvation -78.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds