Wall clock time and date at job start Wed Apr 1 2020 04:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99784 * 2 1 4 4 C 1.53002 * 109.47023 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47312 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47661 * 180.02562 * 5 4 3 7 7 C 1.46495 * 119.99900 * 96.14152 * 6 5 4 8 8 C 1.52997 * 109.47420 * 265.28863 * 7 6 5 9 9 O 1.42904 * 109.47057 * 295.00287 * 8 7 6 10 10 C 1.34782 * 119.99953 * 276.15296 * 6 5 4 11 11 O 1.21350 * 119.99837 * 185.57416 * 10 6 5 12 12 C 1.49451 * 120.00000 * 5.56857 * 10 6 5 13 13 O 1.21344 * 119.99699 * 355.31062 * 12 10 6 14 14 N 1.34772 * 119.99886 * 175.30065 * 12 10 6 15 15 C 1.47025 * 125.64798 * 359.70206 * 14 12 10 16 16 C 1.54329 * 107.26456 * 178.84437 * 15 14 12 17 17 C 1.55153 * 103.02491 * 338.13827 * 16 15 14 18 18 O 1.42898 * 111.00499 * 277.23550 * 17 16 15 19 19 C 1.50697 * 111.04041 * 153.39662 * 17 16 15 20 20 H 1.07992 * 120.00102 * 6.33216 * 19 17 16 21 21 C 1.37883 * 119.99899 * 186.33282 * 19 17 16 22 22 N 1.31512 * 120.00087 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 119.99881 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47240 * 89.99841 * 23 21 19 25 25 H 1.48497 * 109.47219 * 210.00348 * 23 21 19 26 26 H 1.48507 * 109.47150 * 329.99943 * 23 21 19 27 27 C 1.47423 * 125.64953 * 180.02562 * 14 12 10 28 28 H 1.08996 * 109.46883 * 299.99592 * 1 2 3 29 29 H 1.08997 * 109.47482 * 59.99778 * 1 2 3 30 30 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47074 * 60.00422 * 3 2 1 32 32 H 1.09005 * 109.47108 * 300.00280 * 3 2 1 33 33 H 1.09004 * 109.46898 * 60.00257 * 4 3 2 34 34 H 1.08993 * 109.47053 * 300.00105 * 4 3 2 35 35 H 1.09004 * 109.46680 * 60.00429 * 5 4 3 36 36 H 1.08996 * 109.47096 * 300.00613 * 5 4 3 37 37 H 1.08995 * 109.47079 * 145.28890 * 7 6 5 38 38 H 1.09001 * 109.47200 * 25.29104 * 7 6 5 39 39 H 1.09004 * 109.47523 * 175.00215 * 8 7 6 40 40 H 1.09003 * 109.47492 * 54.99807 * 8 7 6 41 41 H 0.96707 * 114.00295 * 180.02562 * 9 8 7 42 42 H 1.08998 * 109.87825 * 298.38957 * 15 14 12 43 43 H 1.09002 * 109.88303 * 59.55371 * 15 14 12 44 44 H 1.09006 * 110.84850 * 219.66841 * 16 15 14 45 45 H 1.08996 * 110.51873 * 96.45423 * 16 15 14 46 46 H 0.96698 * 114.00631 * 173.64374 * 18 17 16 47 47 H 0.97000 * 120.00285 * 180.02562 * 22 21 19 48 48 H 1.08999 * 110.36378 * 322.93368 * 27 14 12 49 49 H 1.08992 * 110.36834 * 85.14621 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 7 5.6182 2.4668 -0.0025 7 6 6.3580 2.5443 -1.2646 8 6 6.6045 1.1319 -1.7988 9 8 7.4626 0.4259 -0.9002 10 6 6.2811 2.2890 1.1575 11 8 7.4945 2.2946 1.1698 12 6 5.5217 2.0852 2.4284 13 8 4.3109 2.1644 2.4311 14 7 6.1818 1.8133 3.5715 15 6 7.6399 1.6833 3.7089 16 6 7.9362 1.3994 5.1966 17 6 6.6704 1.9378 5.9143 18 8 6.7575 3.3497 6.1162 19 6 6.4429 1.2213 7.2204 20 1 7.1776 0.5194 7.5863 21 6 5.2968 1.4618 7.9482 22 7 4.4019 2.3161 7.5024 23 14 5.0146 0.5731 9.5668 24 1 5.5902 1.3731 10.6776 25 1 3.5567 0.3971 9.7872 26 1 5.6727 -0.7574 9.5223 27 6 5.5611 1.5903 4.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8901 32 1 1.6885 1.8464 -0.8900 33 1 3.8567 0.6440 -0.8909 34 1 3.8574 0.6437 0.8890 35 1 3.8365 3.1235 0.8888 36 1 3.8356 3.1231 -0.8912 37 1 7.3135 3.0407 -1.0957 38 1 5.7773 3.1116 -1.9919 39 1 7.0758 1.1916 -2.7798 40 1 5.6544 0.6045 -1.8836 41 1 7.6625 -0.4790 -1.1766 42 1 7.9980 0.8580 3.0935 43 1 8.1249 2.6115 3.4067 44 1 8.8246 1.9390 5.5251 45 1 8.0496 0.3287 5.3661 46 1 5.9509 3.7467 6.4725 47 1 3.5958 2.4857 8.0145 48 1 4.7032 2.2496 5.0217 49 1 5.2577 0.5487 4.9952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326227970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:15 Heat of formation + Delta-G solvation = -219.185044 kcal Electronic energy + Delta-G solvation = -32525.755130 eV Core-core repulsion = 28066.999149 eV Total energy + Delta-G solvation = -4458.755981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95277 -40.16386 -39.00012 -38.79725 -37.96607 -36.85324 -35.86572 -34.24573 -33.28840 -31.91836 -30.61887 -29.66517 -28.04827 -27.54262 -26.11631 -25.42101 -24.09413 -22.73997 -22.28483 -21.49057 -20.21261 -19.12985 -18.61060 -18.19461 -18.03848 -17.40381 -17.30998 -17.08052 -16.93819 -16.64261 -16.31100 -16.09324 -15.83395 -15.47402 -15.12979 -15.00253 -14.76413 -14.67430 -14.61154 -14.07396 -13.89432 -13.60983 -13.52433 -13.33322 -13.26016 -12.94126 -12.83425 -12.73298 -12.57452 -12.39565 -12.37327 -12.26613 -12.14640 -12.11471 -11.93930 -11.76456 -11.19887 -10.88973 -10.68438 -10.60502 -10.40024 -10.19113 -9.88534 -9.53404 -8.25334 -6.42203 0.46565 1.31390 1.43772 1.45306 1.54828 2.20679 2.33808 2.41452 2.88259 3.00621 3.23535 3.48395 3.77493 3.91363 4.05600 4.13990 4.16230 4.17527 4.22285 4.31738 4.33021 4.38159 4.49106 4.52250 4.55418 4.59189 4.61013 4.66532 4.72220 4.77980 4.82909 4.90044 4.97767 5.05074 5.12013 5.12819 5.28668 5.32978 5.42872 5.51426 5.73947 5.98892 6.05716 6.24583 6.38295 6.63193 6.71563 6.94749 7.03661 7.26748 7.34633 8.80451 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.003626 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.034663 B = 7720.755173 C = 9651.263655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.070 3.930 4 C -0.117 4.117 5 C 0.107 3.893 6 N -0.579 5.579 7 C 0.107 3.893 8 C 0.055 3.945 9 O -0.589 6.589 10 C 0.515 3.485 11 O -0.517 6.517 12 C 0.497 3.503 13 O -0.542 6.542 14 N -0.586 5.586 15 C 0.123 3.877 16 C -0.115 4.115 17 C 0.235 3.765 18 O -0.587 6.587 19 C -0.557 4.557 20 H 0.068 0.932 21 C 0.030 3.970 22 N -0.914 5.914 23 Si 0.965 3.035 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.266 1.266 27 C 0.112 3.888 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.388 0.612 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.374 0.626 47 H 0.270 0.730 48 H 0.059 0.941 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -1.518 -21.664 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.007 4.007 4 C -0.156 4.156 5 C -0.015 4.015 6 N -0.312 5.312 7 C -0.014 4.014 8 C -0.023 4.023 9 O -0.396 6.396 10 C 0.297 3.703 11 O -0.392 6.392 12 C 0.281 3.719 13 O -0.422 6.422 14 N -0.318 5.318 15 C 0.001 3.999 16 C -0.153 4.153 17 C 0.194 3.806 18 O -0.395 6.395 19 C -0.595 4.595 20 H 0.087 0.913 21 C -0.171 4.171 22 N -0.553 5.553 23 Si 0.790 3.210 24 H -0.201 1.201 25 H -0.209 1.209 26 H -0.191 1.191 27 C -0.010 4.010 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.157 0.843 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.237 0.763 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.223 0.777 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.366 -1.066 -21.624 21.779 hybrid contribution -1.210 -0.696 1.195 1.838 sum -3.576 -1.762 -20.428 20.814 Atomic orbital electron populations 1.22905 0.79550 1.03673 1.00829 1.87824 1.21529 1.29169 1.95623 1.22408 0.93057 0.84312 1.00947 1.21747 0.94087 0.97996 1.01745 1.21959 0.77125 0.96929 1.05450 1.47699 1.08163 1.69795 1.05578 1.22036 0.98167 0.97191 0.84041 1.22789 0.93855 0.92652 0.93011 1.86679 1.69950 1.31242 1.51701 1.19792 0.87207 0.78339 0.84942 1.90708 1.13789 1.48605 1.86115 1.20347 0.87521 0.79134 0.84896 1.90632 1.13946 1.51943 1.85678 1.48694 1.09628 1.65354 1.08163 1.22058 0.78983 1.01709 0.97129 1.22712 0.98517 1.01715 0.92350 1.19839 0.90062 0.79392 0.91282 1.86126 1.42444 1.23600 1.87287 1.21755 1.05778 1.25953 1.06043 0.91335 1.25794 0.95012 0.95218 1.01120 1.69819 1.10376 1.35197 1.39883 0.85450 0.77138 0.79119 0.79302 1.20056 1.20929 1.19069 1.22957 0.98576 0.99394 0.80093 0.94279 0.92066 0.88759 0.94233 0.90273 0.90584 0.94535 0.89608 0.86134 0.90599 0.84255 0.89804 0.92867 0.76335 0.90578 0.91536 0.89717 0.89204 0.77731 0.92032 0.92264 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.42 -11.09 10.70 -148.98 -1.59 -12.68 16 3 C 0.07 1.61 5.94 71.98 0.43 2.03 16 4 C -0.12 -2.95 5.32 30.59 0.16 -2.79 16 5 C 0.11 2.44 5.02 86.38 0.43 2.88 16 6 N -0.58 -15.14 2.49 -823.42 -2.05 -17.19 16 7 C 0.11 1.94 5.94 86.38 0.51 2.45 16 8 C 0.06 0.89 7.39 71.98 0.53 1.42 16 9 O -0.59 -13.81 12.14 -137.14 -1.67 -15.48 16 10 C 0.52 18.45 7.13 87.27 0.62 19.07 16 11 O -0.52 -20.10 12.83 8.59 0.11 -19.99 16 12 C 0.50 20.89 7.52 87.27 0.66 21.55 16 13 O -0.54 -23.57 11.83 -3.23 -0.04 -23.61 16 14 N -0.59 -26.23 3.33 -813.33 -2.70 -28.94 16 15 C 0.12 5.03 5.50 86.73 0.48 5.51 16 16 C -0.12 -4.85 6.13 31.78 0.19 -4.66 16 17 C 0.23 11.76 0.87 -10.14 -0.01 11.76 16 18 O -0.59 -31.04 13.16 -148.98 -1.96 -33.00 16 19 C -0.56 -29.48 8.27 25.60 0.21 -29.27 16 20 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 21 C 0.03 1.56 5.29 84.66 0.45 2.01 16 22 N -0.91 -49.51 10.69 21.45 0.23 -49.28 16 23 Si 0.96 41.89 29.54 68.60 2.03 43.91 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 C 0.11 5.61 5.38 86.86 0.47 6.08 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.08 1.65 6.84 -2.38 -0.02 1.63 16 34 H 0.04 1.26 6.51 -2.39 -0.02 1.24 16 35 H 0.09 2.49 5.71 -2.38 -0.01 2.48 16 36 H 0.12 1.58 7.78 -2.39 -0.02 1.56 16 37 H 0.08 1.67 7.49 -2.39 -0.02 1.66 16 38 H 0.14 1.24 7.79 -2.39 -0.02 1.22 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.80 6.84 -2.39 -0.02 0.78 16 41 H 0.39 5.76 9.12 -74.05 -0.68 5.09 16 42 H 0.08 2.90 7.81 -2.39 -0.02 2.88 16 43 H 0.07 2.76 7.47 -2.39 -0.02 2.74 16 44 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 45 H 0.09 3.52 8.03 -2.39 -0.02 3.50 16 46 H 0.37 20.32 7.57 -74.06 -0.56 19.76 16 47 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 48 H 0.06 3.30 7.33 -2.39 -0.02 3.28 16 49 H 0.05 2.60 8.03 -2.39 -0.02 2.58 16 Total: -1.00 -71.42 392.16 -1.52 -72.94 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -0.25 Total: 43.52 kcal Atomic # 6 Polarization: 33.40 SS G_CDS: 6.39 Total: 39.79 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -4.53 Total: -95.41 kcal Atomic # 8 Polarization: -99.60 SS G_CDS: -5.15 Total: -104.75 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -71.42 -1.52 -72.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326227970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.242 kcal (2) G-P(sol) polarization free energy of solvation -71.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds