Wall clock time and date at job start Wed Apr 1 2020 04:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00194 * 2 1 4 4 H 1.48492 * 109.47072 * 270.00049 * 3 2 1 5 5 H 1.48501 * 109.47137 * 30.00374 * 3 2 1 6 6 H 1.48506 * 109.47055 * 149.99719 * 3 2 1 7 7 C 1.37877 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00181 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99986 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47160 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47339 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47355 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.46973 * 304.99987 * 12 11 10 14 14 N 1.46897 * 109.47176 * 65.00046 * 12 11 10 15 15 C 1.50701 * 109.47086 * 184.99887 * 12 11 10 16 16 O 1.21288 * 120.00301 * 259.99906 * 15 12 11 17 17 N 1.34775 * 119.99866 * 79.99679 * 15 12 11 18 18 C 1.39870 * 120.00083 * 179.97438 * 17 15 12 19 19 N 1.33637 * 125.60025 * 0.03547 * 18 17 15 20 20 C 1.30856 * 109.77667 * 179.70203 * 19 18 17 21 21 N 1.34376 * 108.20129 * 0.43529 * 20 19 18 22 22 C 1.46506 * 126.76304 * 179.83479 * 21 20 19 23 23 C 1.50699 * 109.46928 * 124.71509 * 22 21 20 24 24 C 1.38677 * 120.41779 * 89.99613 * 23 22 21 25 25 C 1.38627 * 118.41947 * 179.97438 * 24 23 22 26 26 C 1.38231 * 119.16189 * 0.02562 * 25 24 23 27 27 N 1.31856 * 120.76195 * 359.97438 * 26 25 24 28 28 C 1.31881 * 121.72603 * 359.70358 * 27 26 25 29 29 N 1.31171 * 125.60649 * 179.97438 * 18 17 15 30 30 H 0.97005 * 119.99962 * 359.97438 * 1 2 3 31 31 H 1.09011 * 109.46961 * 60.00112 * 9 7 2 32 32 H 1.08997 * 109.47252 * 300.00176 * 9 7 2 33 33 H 1.09001 * 109.47497 * 59.99879 * 10 9 7 34 34 H 1.09007 * 109.47165 * 300.00349 * 10 9 7 35 35 H 1.08997 * 109.47171 * 60.00122 * 11 10 9 36 36 H 1.08997 * 109.46887 * 300.00087 * 11 10 9 37 37 H 1.00896 * 110.99901 * 59.99854 * 14 12 11 38 38 H 1.00903 * 110.99900 * 183.95501 * 14 12 11 39 39 H 0.97006 * 120.00554 * 0.02562 * 17 15 12 40 40 H 1.08001 * 125.89757 * 180.27860 * 20 19 18 41 41 H 1.09004 * 109.47073 * 244.71337 * 22 21 20 42 42 H 1.09000 * 109.47212 * 4.71420 * 22 21 20 43 43 H 1.07995 * 120.79121 * 359.97438 * 24 23 22 44 44 H 1.07998 * 120.42274 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.61887 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.62127 * 180.31766 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0614 -4.0792 -0.0015 13 1 5.6267 -4.6185 0.8402 14 7 5.6728 -4.7355 -1.2569 15 6 7.5633 -4.0811 0.1224 16 8 8.2529 -4.2337 -0.8636 17 7 8.1401 -3.9131 1.3288 18 6 9.5341 -3.9153 1.4439 19 7 10.3976 -4.0734 0.4363 20 6 11.6234 -4.0176 0.8908 21 7 11.5699 -3.8293 2.2203 22 6 12.7077 -3.7112 3.1356 23 6 12.5995 -2.4216 3.9077 24 6 11.9232 -2.3823 5.1177 25 6 11.8495 -1.1741 5.7934 26 6 12.4478 -0.0565 5.2423 27 7 13.0828 -0.1310 4.0891 28 6 13.1782 -1.2646 3.4219 29 7 10.2086 -3.7616 2.5583 30 1 -0.4850 0.8401 0.0004 31 1 3.8751 -0.6805 0.8889 32 1 3.8745 -0.6801 -0.8911 33 1 3.6577 -3.1507 -0.8907 34 1 3.6583 -3.1503 0.8893 35 1 5.9147 -2.1228 0.8890 36 1 5.9147 -2.1229 -0.8909 37 1 6.0636 -4.2539 -2.0527 38 1 5.9418 -5.7080 -1.2549 39 1 7.5886 -3.7913 2.1175 40 1 12.5227 -4.1097 0.2999 41 1 12.7044 -4.5517 3.8298 42 1 13.6359 -3.7158 2.5641 43 1 11.4649 -3.2718 5.5240 44 1 11.3312 -1.1068 6.7385 45 1 12.3945 0.8886 5.7622 46 1 13.7109 -1.2880 2.4827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327662484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:27 Heat of formation + Delta-G solvation = 97.310927 kcal Electronic energy + Delta-G solvation = -28387.114788 eV Core-core repulsion = 24313.977524 eV Total energy + Delta-G solvation = -4073.137264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46102 -40.65731 -40.01826 -36.16112 -35.61868 -34.57315 -33.34867 -32.68263 -31.73037 -31.53937 -31.05198 -28.42587 -27.22947 -25.54738 -24.15129 -23.28946 -23.05029 -22.09623 -21.27162 -20.07981 -19.98858 -18.11334 -17.70526 -17.31976 -16.99482 -16.73890 -16.56305 -16.43130 -15.94576 -15.44141 -15.06170 -14.75193 -14.46707 -14.26311 -14.24030 -13.99346 -13.93177 -13.57898 -13.52082 -13.16793 -12.59941 -12.54653 -11.98014 -11.91800 -11.83019 -11.38510 -11.25232 -10.85987 -10.70904 -10.60093 -10.39332 -10.20659 -10.05667 -9.92749 -9.86811 -9.63834 -9.60481 -9.47846 -9.12141 -8.94985 -8.72059 -8.47402 -5.98083 -3.95094 0.40633 0.75748 1.22501 1.76723 2.20894 2.67064 3.04562 3.31741 3.35296 3.42274 3.46201 3.73892 3.88813 4.01401 4.08893 4.35027 4.40357 4.43660 4.50811 4.53442 4.63442 4.72585 4.86753 5.01077 5.04533 5.18077 5.22314 5.25860 5.36280 5.55986 5.63941 5.79628 5.93152 5.95711 6.12142 6.26255 6.28532 6.45376 6.65671 6.77838 6.81854 7.02405 7.07316 7.40393 7.42997 7.44840 7.55187 7.83071 7.87046 8.02245 8.61947 9.08471 9.65156 11.15564 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.002273 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.476344 B =12317.282936 C =14496.522631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.092 4.092 11 C -0.109 4.109 12 C 0.086 3.914 13 H 0.107 0.893 14 N -0.807 5.807 15 C 0.482 3.518 16 O -0.486 6.486 17 N -0.630 5.630 18 C 0.450 3.550 19 N -0.518 5.518 20 C 0.268 3.732 21 N -0.379 5.379 22 C 0.182 3.818 23 C -0.167 4.167 24 C -0.038 4.038 25 C -0.174 4.174 26 C 0.109 3.891 27 N -0.486 5.486 28 C 0.119 3.881 29 N -0.337 5.337 30 H 0.262 0.738 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.352 0.648 38 H 0.341 0.659 39 H 0.424 0.576 40 H 0.222 0.778 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.158 0.842 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.259 -9.711 11.090 35.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.090 0.910 9 C -0.054 4.054 10 C -0.129 4.129 11 C -0.147 4.147 12 C -0.030 4.030 13 H 0.125 0.875 14 N -0.336 5.336 15 C 0.266 3.734 16 O -0.355 6.355 17 N -0.285 5.285 18 C 0.081 3.919 19 N -0.248 5.248 20 C -0.029 4.029 21 N -0.171 5.171 22 C 0.059 3.941 23 C -0.170 4.170 24 C -0.065 4.065 25 C -0.194 4.194 26 C -0.048 4.048 27 N -0.195 5.195 28 C -0.039 4.039 29 N -0.173 5.173 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.262 0.738 40 H 0.239 0.761 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.176 0.824 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 31.774 -8.739 10.520 34.593 hybrid contribution 1.078 0.154 0.721 1.306 sum 32.853 -8.586 11.241 35.768 Atomic orbital electron populations 1.69919 1.06276 1.26735 1.51573 1.25042 0.94714 0.99119 0.94762 0.86790 0.80305 0.83750 0.78477 1.20354 1.21510 1.19127 1.21170 0.89596 0.94405 1.50202 0.90952 1.19611 0.97120 0.92704 0.95967 1.21370 0.90034 0.99405 1.02139 1.21730 0.99785 0.91007 1.02178 1.21775 0.85611 0.99729 0.95925 0.87518 1.59061 1.64774 1.06702 1.03052 1.23049 0.93322 0.75204 0.81876 1.90796 1.64479 1.44451 1.35748 1.43082 1.00389 1.72410 1.12586 1.20552 0.87286 0.96726 0.87368 1.70633 0.98143 1.25603 1.30446 1.26209 0.98005 0.95853 0.82880 1.50309 1.04591 1.55116 1.07101 1.20543 0.85588 0.95781 0.92167 1.20780 1.02552 0.96530 0.97137 1.21512 0.93345 0.98599 0.93016 1.22219 1.01471 0.93683 1.02021 1.22913 0.91852 0.98701 0.91303 1.67745 1.16444 1.27478 1.07782 1.22682 0.95486 0.87255 0.98430 1.78163 0.86960 1.32570 1.19610 0.92855 0.96993 0.97225 0.91122 0.92893 0.91799 0.91683 0.83334 0.84629 0.73787 0.76150 0.88246 0.86670 0.84500 0.84314 0.82434 0.82857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 9 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 10 C -0.09 -1.77 5.04 -26.73 -0.13 -1.91 16 11 C -0.11 -1.68 4.84 -26.73 -0.13 -1.81 16 12 C 0.09 1.10 3.15 -68.86 -0.22 0.88 16 13 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 14 N -0.81 -10.43 8.44 -5.65 -0.05 -10.47 16 15 C 0.48 6.61 7.03 -10.99 -0.08 6.54 16 16 O -0.49 -8.18 14.93 5.55 0.08 -8.10 16 17 N -0.63 -7.72 5.44 -12.82 -0.07 -7.79 16 18 C 0.45 6.01 8.81 -320.84 -2.83 3.19 16 19 N -0.52 -7.01 9.37 -14.92 -0.14 -7.15 16 20 C 0.27 2.28 12.61 -90.68 -1.14 1.13 16 21 N -0.38 -3.07 3.68 -63.82 -0.23 -3.30 16 22 C 0.18 0.72 6.70 -5.19 -0.03 0.69 16 23 C -0.17 -1.03 5.36 -104.48 -0.56 -1.59 16 24 C -0.04 -0.24 9.86 -39.28 -0.39 -0.63 16 25 C -0.17 -1.10 10.11 -39.44 -0.40 -1.49 16 26 C 0.11 0.81 11.18 -17.54 -0.20 0.61 16 27 N -0.49 -4.46 10.36 -13.25 -0.14 -4.60 16 28 C 0.12 0.86 10.86 -17.55 -0.19 0.67 16 29 N -0.34 -3.91 12.58 30.04 0.38 -3.53 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.01 0.28 7.20 -51.92 -0.37 -0.09 16 32 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 33 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.35 4.72 8.58 -39.29 -0.34 4.38 16 38 H 0.34 3.82 9.06 -39.29 -0.36 3.47 16 39 H 0.42 4.07 8.82 -40.82 -0.36 3.71 16 40 H 0.22 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.10 0.27 8.10 -51.93 -0.42 -0.15 16 42 H 0.12 0.04 8.04 -51.93 -0.42 -0.38 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 395.98 15.07 5.97 5.97 Total: -1.00 -39.93 395.98 -11.39 -51.31 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.45 Total: 5.40 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -6.84 Total: -7.67 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.52 Total: -64.47 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.93 -11.39 -51.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327662484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.624 kcal (2) G-P(sol) polarization free energy of solvation -39.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds