Wall clock time and date at job start Wed Apr 1 2020 04:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00194 * 2 1 4 4 H 1.48492 * 109.47072 * 270.00049 * 3 2 1 5 5 H 1.48501 * 109.47137 * 30.00374 * 3 2 1 6 6 H 1.48506 * 109.47055 * 149.99719 * 3 2 1 7 7 C 1.37877 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00181 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99986 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47160 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47339 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47355 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.46973 * 304.99987 * 12 11 10 14 14 N 1.46897 * 109.47176 * 65.00046 * 12 11 10 15 15 C 1.50701 * 109.47086 * 184.99887 * 12 11 10 16 16 O 1.21288 * 120.00301 * 259.99906 * 15 12 11 17 17 N 1.34775 * 119.99866 * 79.99679 * 15 12 11 18 18 C 1.39870 * 120.00083 * 179.97438 * 17 15 12 19 19 N 1.33637 * 125.60025 * 0.03547 * 18 17 15 20 20 C 1.30856 * 109.77667 * 179.70203 * 19 18 17 21 21 N 1.34376 * 108.20129 * 0.43529 * 20 19 18 22 22 C 1.46506 * 126.76304 * 179.83479 * 21 20 19 23 23 C 1.50699 * 109.46928 * 124.71509 * 22 21 20 24 24 C 1.38677 * 120.41779 * 89.99613 * 23 22 21 25 25 C 1.38627 * 118.41947 * 179.97438 * 24 23 22 26 26 C 1.38231 * 119.16189 * 0.02562 * 25 24 23 27 27 N 1.31856 * 120.76195 * 359.97438 * 26 25 24 28 28 C 1.31881 * 121.72603 * 359.70358 * 27 26 25 29 29 N 1.31171 * 125.60649 * 179.97438 * 18 17 15 30 30 H 0.97005 * 119.99962 * 359.97438 * 1 2 3 31 31 H 1.09011 * 109.46961 * 60.00112 * 9 7 2 32 32 H 1.08997 * 109.47252 * 300.00176 * 9 7 2 33 33 H 1.09001 * 109.47497 * 59.99879 * 10 9 7 34 34 H 1.09007 * 109.47165 * 300.00349 * 10 9 7 35 35 H 1.08997 * 109.47171 * 60.00122 * 11 10 9 36 36 H 1.08997 * 109.46887 * 300.00087 * 11 10 9 37 37 H 1.00896 * 110.99901 * 59.99854 * 14 12 11 38 38 H 1.00903 * 110.99900 * 183.95501 * 14 12 11 39 39 H 0.97006 * 120.00554 * 0.02562 * 17 15 12 40 40 H 1.08001 * 125.89757 * 180.27860 * 20 19 18 41 41 H 1.09004 * 109.47073 * 244.71337 * 22 21 20 42 42 H 1.09000 * 109.47212 * 4.71420 * 22 21 20 43 43 H 1.07995 * 120.79121 * 359.97438 * 24 23 22 44 44 H 1.07998 * 120.42274 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.61887 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.62127 * 180.31766 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0614 -4.0792 -0.0015 13 1 5.6267 -4.6185 0.8402 14 7 5.6728 -4.7355 -1.2569 15 6 7.5633 -4.0811 0.1224 16 8 8.2529 -4.2337 -0.8636 17 7 8.1401 -3.9131 1.3288 18 6 9.5341 -3.9153 1.4439 19 7 10.3976 -4.0734 0.4363 20 6 11.6234 -4.0176 0.8908 21 7 11.5699 -3.8293 2.2203 22 6 12.7077 -3.7112 3.1356 23 6 12.5995 -2.4216 3.9077 24 6 11.9232 -2.3823 5.1177 25 6 11.8495 -1.1741 5.7934 26 6 12.4478 -0.0565 5.2423 27 7 13.0828 -0.1310 4.0891 28 6 13.1782 -1.2646 3.4219 29 7 10.2086 -3.7616 2.5583 30 1 -0.4850 0.8401 0.0004 31 1 3.8751 -0.6805 0.8889 32 1 3.8745 -0.6801 -0.8911 33 1 3.6577 -3.1507 -0.8907 34 1 3.6583 -3.1503 0.8893 35 1 5.9147 -2.1228 0.8890 36 1 5.9147 -2.1229 -0.8909 37 1 6.0636 -4.2539 -2.0527 38 1 5.9418 -5.7080 -1.2549 39 1 7.5886 -3.7913 2.1175 40 1 12.5227 -4.1097 0.2999 41 1 12.7044 -4.5517 3.8298 42 1 13.6359 -3.7158 2.5641 43 1 11.4649 -3.2718 5.5240 44 1 11.3312 -1.1068 6.7385 45 1 12.3945 0.8886 5.7622 46 1 13.7109 -1.2880 2.4827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327662484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:27 Heat of formation + Delta-G solvation = 70.117679 kcal Electronic energy + Delta-G solvation = -28388.293976 eV Core-core repulsion = 24313.977524 eV Total energy + Delta-G solvation = -4074.316452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.18684 -41.21248 -40.96392 -37.30094 -36.54169 -35.31761 -35.17906 -33.36821 -33.18898 -32.38462 -31.74120 -29.94005 -27.88993 -26.85040 -24.65689 -24.44175 -23.86099 -22.89878 -22.19966 -21.67447 -21.01116 -18.88117 -18.84176 -18.35974 -18.10258 -17.52056 -17.37606 -17.09258 -16.93391 -16.30913 -16.10442 -16.00778 -15.58116 -15.34991 -15.25693 -14.80750 -14.79498 -14.44040 -14.37079 -14.04918 -13.97077 -13.75449 -13.32406 -13.14450 -12.96942 -12.42696 -12.41456 -12.37059 -12.08295 -11.80477 -11.68908 -11.40509 -11.25370 -11.21965 -11.01078 -10.92810 -10.74923 -10.72819 -10.47155 -10.10043 -9.78355 -9.74831 -8.26143 -6.28878 -0.07091 0.27960 0.49344 1.10973 1.30333 1.36817 1.37536 1.49702 1.95577 2.16953 2.37982 2.83227 3.09354 3.22115 3.33875 3.49612 3.57301 3.73159 3.82299 3.94047 3.95677 3.96907 4.07051 4.13031 4.37409 4.43695 4.47333 4.49719 4.59512 4.60908 4.78078 4.88266 5.05749 5.09412 5.11320 5.14540 5.21326 5.26455 5.48133 5.65932 5.68173 5.71779 5.76729 5.79174 5.98870 6.12991 6.34684 6.44920 6.79913 6.90220 6.94290 7.21899 7.35308 8.90849 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.002273 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.476344 B =12317.282936 C =14496.522631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.527 4.527 8 H 0.033 0.967 9 C -0.016 4.016 10 C -0.081 4.081 11 C -0.099 4.099 12 C 0.096 3.904 13 H 0.130 0.870 14 N -0.814 5.814 15 C 0.488 3.512 16 O -0.520 6.520 17 N -0.623 5.623 18 C 0.424 3.576 19 N -0.571 5.571 20 C 0.277 3.723 21 N -0.370 5.370 22 C 0.176 3.824 23 C -0.167 4.167 24 C -0.050 4.050 25 C -0.178 4.178 26 C 0.091 3.909 27 N -0.521 5.521 28 C 0.105 3.895 29 N -0.350 5.350 30 H 0.265 0.735 31 H 0.019 0.981 32 H 0.011 0.989 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.349 0.651 38 H 0.351 0.649 39 H 0.434 0.566 40 H 0.270 0.730 41 H 0.116 0.884 42 H 0.160 0.840 43 H 0.148 0.852 44 H 0.157 0.843 45 H 0.171 0.829 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.302 -9.757 11.917 38.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.565 4.565 8 H 0.052 0.948 9 C -0.054 4.054 10 C -0.119 4.119 11 C -0.137 4.137 12 C -0.020 4.020 13 H 0.147 0.853 14 N -0.343 5.343 15 C 0.273 3.727 16 O -0.391 6.391 17 N -0.279 5.279 18 C 0.055 3.945 19 N -0.302 5.302 20 C -0.019 4.019 21 N -0.161 5.161 22 C 0.056 3.944 23 C -0.170 4.170 24 C -0.076 4.076 25 C -0.198 4.198 26 C -0.065 4.065 27 N -0.230 5.230 28 C -0.052 4.052 29 N -0.187 5.187 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.274 0.726 40 H 0.286 0.714 41 H 0.134 0.866 42 H 0.178 0.822 43 H 0.165 0.835 44 H 0.175 0.825 45 H 0.188 0.812 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 34.855 -8.803 11.403 37.715 hybrid contribution 0.169 0.096 0.538 0.572 sum 35.024 -8.708 11.941 38.014 Atomic orbital electron populations 1.70074 1.08249 1.27986 1.53129 1.26025 0.95608 1.03466 0.94427 0.85671 0.79524 0.78481 0.79021 1.19555 1.20967 1.17029 1.21548 0.92329 0.93018 1.49596 0.94849 1.19595 0.93756 0.95878 0.96122 1.21169 0.92804 0.96245 1.01680 1.21539 0.96634 0.92982 1.02528 1.21653 0.85306 0.98339 0.96703 0.85269 1.59081 1.64801 1.07434 1.03029 1.23000 0.93267 0.74641 0.81832 1.90778 1.65167 1.46206 1.36951 1.42933 1.00730 1.71700 1.12509 1.20771 0.87545 0.98210 0.88007 1.70567 1.00024 1.27695 1.31954 1.27053 0.98100 0.93584 0.83128 1.50525 1.04062 1.53806 1.07756 1.21030 0.85671 0.95126 0.92595 1.20966 1.01842 0.97098 0.97121 1.21809 0.93365 0.99024 0.93418 1.22467 1.01172 0.93438 1.02715 1.23235 0.92132 0.99831 0.91324 1.67726 1.17641 1.28816 1.08795 1.23072 0.95862 0.87199 0.99080 1.78058 0.88797 1.32334 1.19519 0.92630 0.96221 0.97090 0.92478 0.92562 0.90324 0.92547 0.83731 0.83522 0.72622 0.71426 0.86575 0.82247 0.83460 0.82504 0.81161 0.81024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 2 C 0.00 0.06 5.47 84.66 0.46 0.52 16 3 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.53 -30.99 9.66 25.60 0.25 -30.75 16 8 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 9 C -0.02 -0.76 4.04 29.85 0.12 -0.64 16 10 C -0.08 -3.08 5.04 30.59 0.15 -2.92 16 11 C -0.10 -2.88 4.84 30.60 0.15 -2.74 16 12 C 0.10 2.33 3.15 44.17 0.14 2.47 16 13 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 14 N -0.81 -20.37 8.44 -171.80 -1.45 -21.82 16 15 C 0.49 12.91 7.03 87.66 0.62 13.53 16 16 O -0.52 -17.26 14.93 -3.05 -0.05 -17.31 16 17 N -0.62 -14.57 5.44 -312.85 -1.70 -16.28 16 18 C 0.42 10.83 8.81 260.80 2.30 13.12 16 19 N -0.57 -14.63 9.37 -201.12 -1.89 -16.52 16 20 C 0.28 3.92 12.61 180.37 2.28 6.20 16 21 N -0.37 -4.92 3.68 -355.81 -1.31 -6.23 16 22 C 0.18 0.77 6.70 85.63 0.57 1.34 16 23 C -0.17 -1.67 5.36 -19.77 -0.11 -1.78 16 24 C -0.05 -0.55 9.86 22.47 0.22 -0.32 16 25 C -0.18 -2.03 10.11 22.36 0.23 -1.80 16 26 C 0.09 1.29 11.18 84.69 0.95 2.24 16 27 N -0.52 -9.15 10.36 -195.84 -2.03 -11.18 16 28 C 0.11 1.34 10.86 84.67 0.92 2.26 16 29 N -0.35 -7.51 12.58 -58.88 -0.74 -8.25 16 30 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 31 H 0.02 0.90 7.20 -2.38 -0.02 0.88 16 32 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 33 H 0.06 2.31 7.75 -2.39 -0.02 2.29 16 34 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 37 H 0.35 9.22 8.58 -89.70 -0.77 8.45 16 38 H 0.35 7.55 9.06 -89.69 -0.81 6.74 16 39 H 0.43 7.73 8.82 -92.70 -0.82 6.91 16 40 H 0.27 0.55 8.06 -2.91 -0.02 0.53 16 41 H 0.12 0.20 8.10 -2.38 -0.02 0.18 16 42 H 0.16 -0.70 8.04 -2.39 -0.02 -0.72 16 43 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -89.39 395.98 0.85 -88.54 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -1.42 Total: 21.71 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 9.24 Total: 0.73 kcal Atomic # 7 Polarization: -132.22 SS G_CDS: -8.82 Total: -141.04 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.05 Total: -17.31 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -89.39 0.85 -88.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327662484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.660 kcal (2) G-P(sol) polarization free energy of solvation -89.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds