Wall clock time and date at job start Wed Apr 1 2020 04:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86811 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47201 * 269.99933 * 3 2 1 5 5 H 1.48500 * 109.46885 * 29.99722 * 3 2 1 6 6 H 1.48497 * 109.47129 * 149.99488 * 3 2 1 7 7 C 1.37870 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00050 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00384 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47167 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47314 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46993 * 54.99312 * 12 11 10 14 14 N 1.46906 * 109.46958 * 295.00019 * 12 11 10 15 15 C 1.50697 * 109.47319 * 175.00069 * 12 11 10 16 16 O 1.21280 * 120.00036 * 99.99600 * 15 12 11 17 17 N 1.34776 * 119.99978 * 279.99616 * 15 12 11 18 18 C 1.39861 * 119.99982 * 179.97438 * 17 15 12 19 19 N 1.33637 * 125.60438 * 359.69524 * 18 17 15 20 20 C 1.30859 * 109.77485 * 179.81466 * 19 18 17 21 21 N 1.34374 * 108.20837 * 0.44511 * 20 19 18 22 22 C 1.46498 * 126.76970 * 179.73128 * 21 20 19 23 23 C 1.50702 * 109.47067 * 124.97167 * 22 21 20 24 24 C 1.38672 * 120.41658 * 90.00177 * 23 22 21 25 25 C 1.38627 * 118.42144 * 180.02562 * 24 23 22 26 26 C 1.38229 * 119.15907 * 359.97438 * 25 24 23 27 27 N 1.31848 * 120.76424 * 0.02562 * 26 25 24 28 28 C 1.31884 * 121.72684 * 359.70071 * 27 26 25 29 29 N 1.31169 * 125.60126 * 179.97438 * 18 17 15 30 30 H 0.97000 * 120.00759 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47124 * 59.99820 * 9 7 2 32 32 H 1.08998 * 109.47157 * 299.99999 * 9 7 2 33 33 H 1.08998 * 109.47166 * 60.00315 * 10 9 7 34 34 H 1.08998 * 109.47279 * 299.99650 * 10 9 7 35 35 H 1.09002 * 109.47343 * 59.99672 * 11 10 9 36 36 H 1.09008 * 109.47223 * 300.00223 * 11 10 9 37 37 H 1.00896 * 111.00309 * 176.04353 * 14 12 11 38 38 H 1.00902 * 110.99923 * 300.00516 * 14 12 11 39 39 H 0.97004 * 120.00065 * 0.02562 * 17 15 12 40 40 H 1.08004 * 125.89196 * 180.17596 * 20 19 18 41 41 H 1.09000 * 109.46805 * 244.97576 * 22 21 20 42 42 H 1.08995 * 109.47048 * 4.97259 * 22 21 20 43 43 H 1.08001 * 120.78952 * 359.97438 * 24 23 22 44 44 H 1.07998 * 120.41927 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.61815 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.62082 * 180.31681 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5516 -2.6363 0.0022 12 6 6.0617 -4.0787 0.0028 13 1 5.6270 -4.6181 -0.8388 14 7 5.6732 -4.7351 1.2583 15 6 7.5636 -4.0805 -0.1211 16 8 8.2532 -4.2330 0.8648 17 7 8.1405 -3.9126 -1.3276 18 6 9.5344 -3.9137 -1.4424 19 7 10.3980 -4.0654 -0.4340 20 6 11.6237 -4.0208 -0.8902 21 7 11.5703 -3.8270 -2.2188 22 6 12.7080 -3.7085 -3.1342 23 6 12.5703 -4.7226 -4.2404 24 6 11.8977 -4.3995 -5.4093 25 6 11.7952 -5.3640 -6.3997 26 6 12.3634 -6.6067 -6.1910 27 7 12.9959 -6.8789 -5.0665 28 6 13.1173 -5.9843 -4.1051 29 7 10.2088 -3.7609 -2.5570 30 1 -0.4851 0.8400 -0.0004 31 1 3.8745 -0.6798 0.8912 32 1 3.8752 -0.6803 -0.8888 33 1 3.6587 -3.1508 -0.8875 34 1 3.6580 -3.1496 0.8925 35 1 5.9150 -2.1217 0.8917 36 1 5.9150 -2.1231 -0.8882 37 1 5.9421 -5.7075 1.2563 38 1 6.0639 -4.2533 2.0541 39 1 7.5889 -3.7903 -2.1161 40 1 12.5229 -4.1181 -0.3000 41 1 12.7281 -2.7057 -3.5608 42 1 13.6338 -3.8898 -2.5883 43 1 11.4633 -3.4200 -5.5444 44 1 11.2788 -5.1469 -7.3230 45 1 12.2876 -7.3638 -6.9574 46 1 13.6470 -6.2421 -3.1999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327662491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:32 Heat of formation + Delta-G solvation = 97.241527 kcal Electronic energy + Delta-G solvation = -28258.210601 eV Core-core repulsion = 24185.070327 eV Total energy + Delta-G solvation = -4073.140274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46356 -40.69552 -40.02240 -36.16666 -35.62576 -34.58456 -33.35235 -32.71672 -31.74576 -31.54262 -31.06324 -28.42979 -27.24614 -25.55229 -24.18670 -23.31016 -23.05421 -22.10802 -21.27631 -20.08242 -19.99254 -18.11800 -17.73937 -17.31258 -17.03991 -16.71788 -16.59314 -16.46589 -15.87172 -15.56414 -14.99256 -14.76755 -14.47692 -14.32328 -14.21277 -14.03721 -13.95667 -13.60656 -13.52769 -13.15383 -12.61875 -12.57268 -11.98804 -11.94586 -11.77396 -11.42873 -11.25756 -10.86581 -10.72676 -10.60269 -10.41574 -10.22213 -10.07020 -9.96196 -9.82532 -9.67450 -9.64218 -9.48669 -9.12290 -8.95308 -8.72228 -8.48008 -5.98475 -3.95569 0.37053 0.71781 1.22090 1.76038 2.20784 2.66736 3.04221 3.27978 3.33754 3.41412 3.45886 3.71535 3.86442 4.00946 4.05945 4.32988 4.36465 4.43360 4.50131 4.51653 4.62924 4.71554 4.85514 4.97296 5.04659 5.14517 5.21784 5.25578 5.35731 5.53017 5.60909 5.79079 5.92778 5.95442 6.08062 6.25931 6.28004 6.45168 6.65703 6.77144 6.81680 7.01172 7.07369 7.38189 7.40478 7.45556 7.54046 7.82902 7.86584 8.02082 8.61515 9.08059 9.64614 11.15131 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.001884 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.078890 B =14855.305265 C =15508.853412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.092 4.092 11 C -0.108 4.108 12 C 0.086 3.914 13 H 0.107 0.893 14 N -0.807 5.807 15 C 0.482 3.518 16 O -0.486 6.486 17 N -0.630 5.630 18 C 0.450 3.550 19 N -0.518 5.518 20 C 0.268 3.732 21 N -0.379 5.379 22 C 0.181 3.819 23 C -0.165 4.165 24 C -0.038 4.038 25 C -0.174 4.174 26 C 0.108 3.892 27 N -0.487 5.487 28 C 0.119 3.881 29 N -0.337 5.337 30 H 0.262 0.738 31 H 0.014 0.986 32 H 0.008 0.992 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.341 0.659 38 H 0.352 0.648 39 H 0.424 0.576 40 H 0.222 0.778 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.158 0.842 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.235 -11.163 -11.230 35.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.090 0.910 9 C -0.054 4.054 10 C -0.130 4.130 11 C -0.147 4.147 12 C -0.031 4.031 13 H 0.125 0.875 14 N -0.336 5.336 15 C 0.266 3.734 16 O -0.355 6.355 17 N -0.285 5.285 18 C 0.081 3.919 19 N -0.248 5.248 20 C -0.029 4.029 21 N -0.171 5.171 22 C 0.058 3.942 23 C -0.168 4.168 24 C -0.065 4.065 25 C -0.194 4.194 26 C -0.049 4.049 27 N -0.195 5.195 28 C -0.039 4.039 29 N -0.173 5.173 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.154 0.846 38 H 0.167 0.833 39 H 0.262 0.738 40 H 0.239 0.761 41 H 0.118 0.882 42 H 0.134 0.866 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.175 0.825 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 31.730 -11.748 -10.879 35.541 hybrid contribution 1.104 1.711 -0.546 2.108 sum 32.834 -10.037 -11.425 36.185 Atomic orbital electron populations 1.69916 1.06269 1.26737 1.51553 1.25046 0.94720 0.99123 0.94779 0.86787 0.80404 0.83769 0.78356 1.20445 1.21485 1.19063 1.21170 0.89610 0.94411 1.50197 0.90955 1.19610 0.97114 0.92701 0.95966 1.21374 0.90053 0.99404 1.02152 1.21731 0.99771 0.90996 1.02174 1.21777 0.85615 0.99737 0.95929 0.87535 1.59061 1.64775 1.06712 1.03050 1.23045 0.93321 0.75204 0.81876 1.90795 1.64480 1.44432 1.35755 1.43081 1.00386 1.72408 1.12594 1.20550 0.87288 0.96792 0.87285 1.70637 0.98138 1.25559 1.30486 1.26211 0.98008 0.95768 0.82941 1.50300 1.04601 1.55192 1.07030 1.20547 0.85537 0.99152 0.88921 1.20787 1.02566 0.96978 0.96502 1.21536 0.93144 0.99959 0.91812 1.22219 1.01581 0.94801 1.00791 1.22895 0.92036 0.95543 0.94410 1.67739 1.15799 1.34522 1.01488 1.22679 0.95537 0.88395 0.97281 1.78166 0.86949 1.32709 1.19493 0.92857 0.96785 0.97419 0.92919 0.91095 0.91662 0.91790 0.84621 0.83335 0.73786 0.76146 0.88197 0.86648 0.84433 0.84320 0.82475 0.82846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 2 C 0.06 1.89 5.47 -17.83 -0.10 1.79 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 10 C -0.09 -1.77 5.04 -26.73 -0.13 -1.91 16 11 C -0.11 -1.65 4.84 -26.73 -0.13 -1.78 16 12 C 0.09 1.10 3.15 -68.86 -0.22 0.88 16 13 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 14 N -0.81 -10.46 8.44 -5.65 -0.05 -10.51 16 15 C 0.48 6.61 7.03 -10.99 -0.08 6.53 16 16 O -0.49 -8.18 14.93 5.56 0.08 -8.10 16 17 N -0.63 -7.71 5.44 -12.82 -0.07 -7.77 16 18 C 0.45 6.01 8.81 -320.85 -2.83 3.18 16 19 N -0.52 -7.01 9.37 -14.92 -0.14 -7.14 16 20 C 0.27 2.27 12.61 -90.68 -1.14 1.13 16 21 N -0.38 -3.06 3.68 -63.82 -0.23 -3.29 16 22 C 0.18 0.72 6.70 -5.19 -0.03 0.68 16 23 C -0.17 -0.96 5.36 -104.48 -0.56 -1.52 16 24 C -0.04 -0.23 9.86 -39.28 -0.39 -0.62 16 25 C -0.17 -0.99 10.11 -39.44 -0.40 -1.39 16 26 C 0.11 0.71 11.18 -17.55 -0.20 0.52 16 27 N -0.49 -4.08 10.36 -13.25 -0.14 -4.22 16 28 C 0.12 0.79 10.86 -17.55 -0.19 0.60 16 29 N -0.34 -3.90 12.58 30.04 0.38 -3.52 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 32 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.34 3.87 9.06 -39.29 -0.36 3.51 16 38 H 0.35 4.72 8.58 -39.29 -0.34 4.38 16 39 H 0.42 4.06 8.82 -40.82 -0.36 3.70 16 40 H 0.22 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.10 0.30 8.10 -51.93 -0.42 -0.12 16 42 H 0.12 0.03 8.04 -51.93 -0.42 -0.39 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 45 H 0.16 0.66 8.06 -52.49 -0.42 0.23 16 46 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 LS Contribution 395.98 15.07 5.97 5.97 Total: -1.00 -39.73 395.98 -11.39 -51.12 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.45 Total: 5.21 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -6.84 Total: -7.62 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: 0.52 Total: -63.99 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.73 -11.39 -51.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327662491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.357 kcal (2) G-P(sol) polarization free energy of solvation -39.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds