Wall clock time and date at job start Wed Apr 1 2020 04:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86811 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47201 * 269.99933 * 3 2 1 5 5 H 1.48500 * 109.46885 * 29.99722 * 3 2 1 6 6 H 1.48497 * 109.47129 * 149.99488 * 3 2 1 7 7 C 1.37870 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00050 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00384 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47167 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47314 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46993 * 54.99312 * 12 11 10 14 14 N 1.46906 * 109.46958 * 295.00019 * 12 11 10 15 15 C 1.50697 * 109.47319 * 175.00069 * 12 11 10 16 16 O 1.21280 * 120.00036 * 99.99600 * 15 12 11 17 17 N 1.34776 * 119.99978 * 279.99616 * 15 12 11 18 18 C 1.39861 * 119.99982 * 179.97438 * 17 15 12 19 19 N 1.33637 * 125.60438 * 359.69524 * 18 17 15 20 20 C 1.30859 * 109.77485 * 179.81466 * 19 18 17 21 21 N 1.34374 * 108.20837 * 0.44511 * 20 19 18 22 22 C 1.46498 * 126.76970 * 179.73128 * 21 20 19 23 23 C 1.50702 * 109.47067 * 124.97167 * 22 21 20 24 24 C 1.38672 * 120.41658 * 90.00177 * 23 22 21 25 25 C 1.38627 * 118.42144 * 180.02562 * 24 23 22 26 26 C 1.38229 * 119.15907 * 359.97438 * 25 24 23 27 27 N 1.31848 * 120.76424 * 0.02562 * 26 25 24 28 28 C 1.31884 * 121.72684 * 359.70071 * 27 26 25 29 29 N 1.31169 * 125.60126 * 179.97438 * 18 17 15 30 30 H 0.97000 * 120.00759 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47124 * 59.99820 * 9 7 2 32 32 H 1.08998 * 109.47157 * 299.99999 * 9 7 2 33 33 H 1.08998 * 109.47166 * 60.00315 * 10 9 7 34 34 H 1.08998 * 109.47279 * 299.99650 * 10 9 7 35 35 H 1.09002 * 109.47343 * 59.99672 * 11 10 9 36 36 H 1.09008 * 109.47223 * 300.00223 * 11 10 9 37 37 H 1.00896 * 111.00309 * 176.04353 * 14 12 11 38 38 H 1.00902 * 110.99923 * 300.00516 * 14 12 11 39 39 H 0.97004 * 120.00065 * 0.02562 * 17 15 12 40 40 H 1.08004 * 125.89196 * 180.17596 * 20 19 18 41 41 H 1.09000 * 109.46805 * 244.97576 * 22 21 20 42 42 H 1.08995 * 109.47048 * 4.97259 * 22 21 20 43 43 H 1.08001 * 120.78952 * 359.97438 * 24 23 22 44 44 H 1.07998 * 120.41927 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.61815 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.62082 * 180.31681 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5516 -2.6363 0.0022 12 6 6.0617 -4.0787 0.0028 13 1 5.6270 -4.6181 -0.8388 14 7 5.6732 -4.7351 1.2583 15 6 7.5636 -4.0805 -0.1211 16 8 8.2532 -4.2330 0.8648 17 7 8.1405 -3.9126 -1.3276 18 6 9.5344 -3.9137 -1.4424 19 7 10.3980 -4.0654 -0.4340 20 6 11.6237 -4.0208 -0.8902 21 7 11.5703 -3.8270 -2.2188 22 6 12.7080 -3.7085 -3.1342 23 6 12.5703 -4.7226 -4.2404 24 6 11.8977 -4.3995 -5.4093 25 6 11.7952 -5.3640 -6.3997 26 6 12.3634 -6.6067 -6.1910 27 7 12.9959 -6.8789 -5.0665 28 6 13.1173 -5.9843 -4.1051 29 7 10.2088 -3.7609 -2.5570 30 1 -0.4851 0.8400 -0.0004 31 1 3.8745 -0.6798 0.8912 32 1 3.8752 -0.6803 -0.8888 33 1 3.6587 -3.1508 -0.8875 34 1 3.6580 -3.1496 0.8925 35 1 5.9150 -2.1217 0.8917 36 1 5.9150 -2.1231 -0.8882 37 1 5.9421 -5.7075 1.2563 38 1 6.0639 -4.2533 2.0541 39 1 7.5889 -3.7903 -2.1161 40 1 12.5229 -4.1181 -0.3000 41 1 12.7281 -2.7057 -3.5608 42 1 13.6338 -3.8898 -2.5883 43 1 11.4633 -3.4200 -5.5444 44 1 11.2788 -5.1469 -7.3230 45 1 12.2876 -7.3638 -6.9574 46 1 13.6470 -6.2421 -3.1999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327662491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:31 Heat of formation + Delta-G solvation = 70.240923 kcal Electronic energy + Delta-G solvation = -28259.381435 eV Core-core repulsion = 24185.070327 eV Total energy + Delta-G solvation = -4074.311108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.18778 -41.21366 -40.96507 -37.29702 -36.54337 -35.31832 -35.17500 -33.36346 -33.18795 -32.38444 -31.74277 -29.93595 -27.89177 -26.85052 -24.65365 -24.43807 -23.86035 -22.89711 -22.19992 -21.66822 -21.01214 -18.87772 -18.83982 -18.36233 -18.09173 -17.55990 -17.31231 -17.17484 -16.85085 -16.31265 -16.22825 -15.82350 -15.67030 -15.34039 -15.25823 -14.80077 -14.77071 -14.43972 -14.40692 -14.04626 -13.96138 -13.75132 -13.27421 -13.13873 -12.98304 -12.51491 -12.41689 -12.27776 -12.08754 -11.77638 -11.71335 -11.34885 -11.30075 -11.20424 -11.01798 -10.92272 -10.75061 -10.71728 -10.47425 -10.09960 -9.78619 -9.75047 -8.25300 -6.28306 -0.06824 0.27724 0.49109 1.10688 1.30400 1.36526 1.39386 1.51292 1.95587 2.16591 2.38951 2.83425 3.10008 3.21992 3.33523 3.49564 3.57260 3.73085 3.82244 3.94060 3.96053 3.97180 4.06956 4.13314 4.37299 4.43745 4.47699 4.49709 4.59370 4.61430 4.78300 4.89245 5.06444 5.09713 5.12555 5.14824 5.21458 5.26697 5.47988 5.67608 5.68138 5.71962 5.77187 5.79167 5.98688 6.12896 6.35252 6.44276 6.80533 6.90132 6.94046 7.21761 7.35870 8.91623 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.001884 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.078890 B =14855.305265 C =15508.853412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.001 4.001 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.249 1.249 7 C -0.528 4.528 8 H 0.032 0.968 9 C -0.016 4.016 10 C -0.082 4.082 11 C -0.098 4.098 12 C 0.096 3.904 13 H 0.128 0.872 14 N -0.815 5.815 15 C 0.489 3.511 16 O -0.520 6.520 17 N -0.623 5.623 18 C 0.425 3.575 19 N -0.571 5.571 20 C 0.278 3.722 21 N -0.370 5.370 22 C 0.175 3.825 23 C -0.167 4.167 24 C -0.051 4.051 25 C -0.178 4.178 26 C 0.093 3.907 27 N -0.520 5.520 28 C 0.107 3.893 29 N -0.351 5.351 30 H 0.265 0.735 31 H 0.013 0.987 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.350 0.650 38 H 0.349 0.651 39 H 0.434 0.566 40 H 0.270 0.730 41 H 0.113 0.887 42 H 0.160 0.840 43 H 0.145 0.855 44 H 0.157 0.843 45 H 0.173 0.827 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.353 -10.265 -11.996 38.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.566 4.566 8 H 0.050 0.950 9 C -0.053 4.053 10 C -0.120 4.120 11 C -0.136 4.136 12 C -0.021 4.021 13 H 0.146 0.854 14 N -0.344 5.344 15 C 0.273 3.727 16 O -0.391 6.391 17 N -0.279 5.279 18 C 0.055 3.945 19 N -0.302 5.302 20 C -0.019 4.019 21 N -0.162 5.162 22 C 0.055 3.945 23 C -0.170 4.170 24 C -0.077 4.077 25 C -0.197 4.197 26 C -0.064 4.064 27 N -0.229 5.229 28 C -0.051 4.051 29 N -0.187 5.187 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.274 0.726 40 H 0.286 0.714 41 H 0.131 0.869 42 H 0.178 0.822 43 H 0.163 0.837 44 H 0.175 0.825 45 H 0.190 0.810 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 34.885 -10.867 -11.703 38.367 hybrid contribution 0.168 1.346 -0.389 1.411 sum 35.054 -9.521 -12.091 38.283 Atomic orbital electron populations 1.70076 1.08280 1.27991 1.53110 1.26052 0.95636 1.03568 0.94415 0.85644 0.79382 0.78304 0.79204 1.18940 1.21212 1.17287 1.21552 0.92391 0.92993 1.49643 0.94971 1.19592 0.93690 0.95831 0.96205 1.21175 0.92889 0.96294 1.01615 1.21541 0.96548 0.92858 1.02664 1.21659 0.85315 0.98453 0.96629 0.85413 1.59084 1.64816 1.07408 1.03073 1.22993 0.93257 0.74639 0.81834 1.90776 1.65167 1.46192 1.36964 1.42930 1.00722 1.71700 1.12513 1.20768 0.87548 0.98288 0.87910 1.70570 1.00015 1.27653 1.31998 1.27054 0.98105 0.93477 0.83216 1.50521 1.04074 1.53856 1.07703 1.21024 0.85593 0.99320 0.88586 1.20944 1.02045 0.97084 0.96900 1.21805 0.93261 1.00415 0.92248 1.22463 1.01299 0.94441 1.01542 1.23240 0.92095 0.96474 0.94551 1.67732 1.16947 1.35729 1.02489 1.23061 0.95797 0.88569 0.97646 1.78062 0.88792 1.32481 1.19399 0.92652 0.96894 0.96209 0.92638 0.92571 0.92481 0.90073 0.83596 0.83700 0.72616 0.71421 0.86860 0.82223 0.83727 0.82512 0.80979 0.80968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.90 13.96 21.44 0.30 -60.60 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.43 16 3 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.25 -11.06 6.54 99.48 0.65 -10.40 16 7 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 9 C -0.02 -0.74 4.04 29.85 0.12 -0.62 16 10 C -0.08 -3.09 5.04 30.60 0.15 -2.94 16 11 C -0.10 -2.83 4.84 30.60 0.15 -2.68 16 12 C 0.10 2.32 3.15 44.17 0.14 2.46 16 13 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 14 N -0.81 -20.55 8.44 -171.80 -1.45 -22.00 16 15 C 0.49 12.93 7.03 87.66 0.62 13.54 16 16 O -0.52 -17.28 14.93 -3.03 -0.05 -17.33 16 17 N -0.62 -14.57 5.44 -312.87 -1.70 -16.27 16 18 C 0.42 10.84 8.81 260.80 2.30 13.14 16 19 N -0.57 -14.65 9.37 -201.13 -1.89 -16.54 16 20 C 0.28 3.94 12.61 180.37 2.28 6.21 16 21 N -0.37 -4.96 3.68 -355.83 -1.31 -6.27 16 22 C 0.18 0.79 6.70 85.63 0.57 1.37 16 23 C -0.17 -1.57 5.36 -19.77 -0.11 -1.68 16 24 C -0.05 -0.53 9.86 22.47 0.22 -0.31 16 25 C -0.18 -1.82 10.11 22.36 0.23 -1.59 16 26 C 0.09 1.16 11.18 84.69 0.95 2.10 16 27 N -0.52 -8.29 10.36 -195.84 -2.03 -10.32 16 28 C 0.11 1.23 10.86 84.67 0.92 2.15 16 29 N -0.35 -7.54 12.58 -58.89 -0.74 -8.28 16 30 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.01 0.60 7.20 -2.38 -0.02 0.58 16 32 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 2.27 7.75 -2.39 -0.02 2.25 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.35 7.69 9.06 -89.70 -0.81 6.88 16 38 H 0.35 9.25 8.58 -89.69 -0.77 8.48 16 39 H 0.43 7.72 8.82 -92.71 -0.82 6.90 16 40 H 0.27 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.11 0.28 8.10 -2.39 -0.02 0.26 16 42 H 0.16 -0.69 8.04 -2.39 -0.02 -0.71 16 43 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 44 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 45 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -88.99 395.98 0.85 -88.14 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -1.42 Total: 21.63 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 9.24 Total: 0.88 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -8.82 Total: -140.29 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.05 Total: -17.33 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -88.99 0.85 -88.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327662491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.378 kcal (2) G-P(sol) polarization free energy of solvation -88.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds