Wall clock time and date at job start Wed Apr 1 2020 03:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46902 * 109.46985 * 119.99521 * 2 1 3 5 5 C 1.46897 * 111.00010 * 275.00429 * 4 2 1 6 6 C 1.53006 * 109.47379 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47437 * 179.97438 * 6 5 4 8 8 C 1.47050 * 125.40922 * 269.71825 * 7 6 5 9 9 C 1.54106 * 103.86226 * 179.86978 * 8 7 6 10 10 N 1.47053 * 103.86261 * 0.37250 * 9 8 7 11 11 C 1.33947 * 109.17733 * 359.75685 * 10 9 8 12 12 O 1.21590 * 123.04060 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47337 * 239.99704 * 2 1 3 14 14 H 1.09007 * 109.47080 * 299.99517 * 13 2 1 15 15 C 1.53000 * 109.47023 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47455 * 60.00113 * 13 2 1 17 17 C 1.34777 * 120.00199 * 205.00257 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47506 * 89.99666 * 25 23 21 27 27 H 1.48498 * 109.47217 * 210.00061 * 25 23 21 28 28 H 1.48502 * 109.46767 * 329.99807 * 25 23 21 29 29 H 1.08999 * 109.47768 * 299.99985 * 1 2 3 30 30 H 1.09007 * 109.47256 * 60.00599 * 1 2 3 31 31 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 32 32 H 1.00906 * 111.00020 * 38.95518 * 4 2 1 33 33 H 1.08999 * 109.46985 * 299.99711 * 5 4 2 34 34 H 1.09004 * 109.47341 * 59.99928 * 5 4 2 35 35 H 1.09005 * 109.46890 * 300.00153 * 6 5 4 36 36 H 1.08996 * 109.47202 * 59.99335 * 6 5 4 37 37 H 1.08995 * 110.54908 * 298.58996 * 8 7 6 38 38 H 1.09003 * 110.54994 * 61.40568 * 8 7 6 39 39 H 1.09001 * 110.76262 * 241.67765 * 9 8 7 40 40 H 1.08997 * 110.34244 * 118.86414 * 9 8 7 41 41 H 0.97001 * 125.40999 * 179.75090 * 10 9 8 42 42 H 1.08998 * 109.47598 * 59.99967 * 15 13 2 43 43 H 1.09005 * 109.47473 * 179.97438 * 15 13 2 44 44 H 1.08998 * 109.46925 * 299.99562 * 15 13 2 45 45 H 0.97000 * 119.99484 * 24.99354 * 16 13 2 46 46 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 47 47 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 48 48 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5326 3.5743 7 7 2.6592 0.3801 4.7184 8 6 3.8234 1.1961 5.0942 9 6 3.3515 1.9571 6.3484 10 7 1.9746 1.4822 6.5515 11 6 1.6675 0.5998 5.5917 12 8 0.5862 0.0484 5.5194 13 6 2.0400 -0.7213 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7218 -1.2487 16 7 1.5518 -0.0308 -2.4454 17 6 1.4231 -0.7032 -3.6063 18 8 1.7119 -1.8799 -3.6608 19 6 0.9267 0.0086 -4.8384 20 16 0.8721 -1.1529 -6.2254 21 6 0.2745 -0.0864 -7.4942 22 1 0.0644 0.9499 -7.2742 23 6 0.0746 -0.5777 -8.7769 24 7 0.3321 -1.8404 -9.0455 25 14 -0.5583 0.5531 -10.1222 26 1 0.5905 1.1914 -10.8136 27 1 -1.3487 -0.2359 -11.1009 28 1 -1.4200 1.6029 -9.5217 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.4495 -1.4979 1.4102 33 1 2.7587 1.0463 2.1182 34 1 1.0869 0.6164 2.5525 35 1 1.9200 -1.3565 3.8032 36 1 3.5915 -0.9260 3.3685 37 1 4.6767 0.5599 5.3289 38 1 4.0740 1.8954 4.2965 39 1 3.3634 3.0331 6.1748 40 1 3.9750 1.6999 7.2046 41 1 1.3829 1.7633 7.2669 42 1 3.9330 -1.2358 -0.3588 43 1 3.9335 -1.2361 -2.1385 44 1 3.9337 0.3057 -1.2486 45 1 1.3210 0.9104 -2.4018 46 1 -0.0733 0.4008 -4.6533 47 1 1.6006 0.8308 -5.0792 48 1 0.1921 -2.1839 -9.9418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328986690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:40 Heat of formation + Delta-G solvation = -52.543118 kcal Electronic energy + Delta-G solvation = -27100.157142 eV Core-core repulsion = 23123.672918 eV Total energy + Delta-G solvation = -3976.484223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42826 -39.56072 -37.83188 -36.75627 -35.49525 -33.95663 -32.41149 -31.46852 -30.20726 -29.38355 -28.47076 -27.49177 -25.46510 -24.01668 -23.52566 -22.92333 -21.13142 -20.42568 -20.21021 -18.16060 -17.82275 -17.16558 -16.68144 -16.40430 -16.24486 -15.73616 -15.15969 -14.85653 -14.78774 -14.69387 -14.36681 -14.33221 -14.18811 -13.82807 -13.72125 -13.41945 -13.19025 -13.09028 -12.86407 -12.64641 -12.44441 -12.33456 -12.22942 -11.81395 -11.68970 -11.52851 -11.27409 -11.05065 -11.00787 -10.78850 -10.71156 -10.62239 -9.80455 -9.78879 -9.33443 -9.11513 -9.05396 -8.93670 -8.66062 -8.20965 -6.47548 -6.19972 -3.90201 2.04249 2.70318 3.02976 3.15896 3.23337 3.27563 3.31137 3.37712 3.67052 3.81876 4.12636 4.22151 4.29608 4.34472 4.48797 4.66344 4.73793 4.83001 4.87387 4.98122 5.08388 5.09846 5.13704 5.15106 5.18892 5.40551 5.45047 5.51600 5.55516 5.61512 5.68469 5.69671 5.92197 5.94471 5.98131 6.12856 6.16871 6.21812 6.39249 6.57509 6.59824 6.79377 6.99169 7.02475 7.61125 7.77766 8.13960 8.36812 8.68602 9.25320 10.87428 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.032635 B = 0.001534 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.776388 B =18252.455117 C =18434.796971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.080 0.920 4 N -0.676 5.676 5 C 0.044 3.956 6 C 0.152 3.848 7 N -0.631 5.631 8 C 0.091 3.909 9 C 0.092 3.908 10 N -0.744 5.744 11 C 0.697 3.303 12 O -0.585 6.585 13 C 0.154 3.846 14 H 0.087 0.913 15 C -0.151 4.151 16 N -0.734 5.734 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.273 1.273 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.347 0.653 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.429 0.571 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.395 0.605 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.606 10.361 32.626 35.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.098 0.902 4 N -0.307 5.307 5 C -0.087 4.087 6 C 0.030 3.970 7 N -0.370 5.370 8 C -0.033 4.033 9 C -0.033 4.033 10 N -0.406 5.406 11 C 0.397 3.603 12 O -0.462 6.462 13 C 0.049 3.951 14 H 0.105 0.895 15 C -0.210 4.210 16 N -0.389 5.389 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.165 0.835 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.271 0.729 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.228 0.772 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.224 7.919 32.059 34.287 hybrid contribution -1.928 3.005 -0.253 3.579 sum 7.296 10.924 31.806 34.412 Atomic orbital electron populations 1.22494 0.96499 1.02907 1.02377 1.21726 0.93101 0.97974 0.90040 0.90164 1.60340 1.57743 1.09682 1.02972 1.22335 1.00270 0.95960 0.90126 1.21141 1.03206 0.90538 0.82117 1.47084 1.14172 1.46692 1.29047 1.22413 0.89958 0.94388 0.96495 1.22352 0.83533 0.99596 0.97856 1.45120 1.16448 1.47156 1.31903 1.15956 0.83985 0.80165 0.80188 1.90987 1.23297 1.55109 1.76846 1.20736 0.94538 0.97264 0.82574 0.89482 1.22033 0.94810 1.01474 1.02635 1.46047 1.69467 1.13741 1.09635 1.20251 0.76839 0.87221 0.83694 1.90700 1.48183 1.15779 1.84395 1.23537 1.03616 1.04828 0.98459 1.85395 1.86480 1.12912 0.98511 1.22876 1.51082 0.98177 0.96281 0.90971 1.24986 0.95107 0.95524 0.97942 1.70020 1.45596 1.13251 1.21410 0.86176 0.78815 0.79972 0.80576 1.20282 1.20752 1.19734 0.92734 0.91399 0.91942 0.83485 0.90840 0.94527 0.89743 0.89039 0.89769 0.89885 0.89907 0.89953 0.72937 0.90690 0.92444 0.93419 0.77182 0.89370 0.89312 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.00 37.16 0.33 -1.35 16 2 C 0.08 0.72 2.22 -67.72 -0.15 0.57 16 3 H 0.08 0.65 7.80 -51.93 -0.40 0.25 16 4 N -0.68 -5.14 5.48 -106.73 -0.59 -5.73 16 5 C 0.04 0.30 5.81 -3.82 -0.02 0.28 16 6 C 0.15 0.98 6.26 -4.04 -0.03 0.96 16 7 N -0.63 -4.18 2.96 -178.82 -0.53 -4.71 16 8 C 0.09 0.26 7.68 -3.16 -0.02 0.23 16 9 C 0.09 0.18 8.06 -3.16 -0.03 0.16 16 10 N -0.74 -4.05 6.37 -64.70 -0.41 -4.46 16 11 C 0.70 6.52 8.60 -88.40 -0.76 5.76 16 12 O -0.58 -8.23 17.53 5.29 0.09 -8.13 16 13 C 0.15 1.81 2.34 -67.93 -0.16 1.65 16 14 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 15 C -0.15 -1.74 9.33 37.16 0.35 -1.40 16 16 N -0.73 -9.69 4.38 -53.81 -0.24 -9.93 16 17 C 0.53 9.93 7.81 -10.98 -0.09 9.84 16 18 O -0.52 -11.73 15.53 5.55 0.09 -11.65 16 19 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 25 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 30 H 0.07 0.65 7.45 -51.93 -0.39 0.26 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.35 2.64 8.47 -39.29 -0.33 2.30 16 33 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 34 H 0.04 0.33 7.44 -51.93 -0.39 -0.06 16 35 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 38 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 40 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 41 H 0.43 1.75 8.96 -40.82 -0.37 1.38 16 42 H 0.07 0.78 7.60 -51.93 -0.39 0.38 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.39 4.11 8.39 -40.82 -0.34 3.77 16 46 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 47 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 409.82 15.07 6.18 6.18 Total: -1.00 -38.25 409.82 -10.06 -48.31 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.99 Total: 2.28 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.15 Total: 0.76 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -1.03 Total: -50.39 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.18 Total: -19.78 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -38.25 -10.06 -48.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328986690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.237 kcal (2) G-P(sol) polarization free energy of solvation -38.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds