Wall clock time and date at job start Wed Apr 1 2020 03:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46902 * 109.46985 * 119.99521 * 2 1 3 5 5 C 1.46897 * 111.00010 * 275.00429 * 4 2 1 6 6 C 1.53006 * 109.47379 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47437 * 179.97438 * 6 5 4 8 8 C 1.47050 * 125.40922 * 269.71825 * 7 6 5 9 9 C 1.54106 * 103.86226 * 179.86978 * 8 7 6 10 10 N 1.47053 * 103.86261 * 0.37250 * 9 8 7 11 11 C 1.33947 * 109.17733 * 359.75685 * 10 9 8 12 12 O 1.21590 * 123.04060 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47337 * 239.99704 * 2 1 3 14 14 H 1.09007 * 109.47080 * 299.99517 * 13 2 1 15 15 C 1.53000 * 109.47023 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47455 * 60.00113 * 13 2 1 17 17 C 1.34777 * 120.00199 * 205.00257 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47506 * 89.99666 * 25 23 21 27 27 H 1.48498 * 109.47217 * 210.00061 * 25 23 21 28 28 H 1.48502 * 109.46767 * 329.99807 * 25 23 21 29 29 H 1.08999 * 109.47768 * 299.99985 * 1 2 3 30 30 H 1.09007 * 109.47256 * 60.00599 * 1 2 3 31 31 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 32 32 H 1.00906 * 111.00020 * 38.95518 * 4 2 1 33 33 H 1.08999 * 109.46985 * 299.99711 * 5 4 2 34 34 H 1.09004 * 109.47341 * 59.99928 * 5 4 2 35 35 H 1.09005 * 109.46890 * 300.00153 * 6 5 4 36 36 H 1.08996 * 109.47202 * 59.99335 * 6 5 4 37 37 H 1.08995 * 110.54908 * 298.58996 * 8 7 6 38 38 H 1.09003 * 110.54994 * 61.40568 * 8 7 6 39 39 H 1.09001 * 110.76262 * 241.67765 * 9 8 7 40 40 H 1.08997 * 110.34244 * 118.86414 * 9 8 7 41 41 H 0.97001 * 125.40999 * 179.75090 * 10 9 8 42 42 H 1.08998 * 109.47598 * 59.99967 * 15 13 2 43 43 H 1.09005 * 109.47473 * 179.97438 * 15 13 2 44 44 H 1.08998 * 109.46925 * 299.99562 * 15 13 2 45 45 H 0.97000 * 119.99484 * 24.99354 * 16 13 2 46 46 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 47 47 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 48 48 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5326 3.5743 7 7 2.6592 0.3801 4.7184 8 6 3.8234 1.1961 5.0942 9 6 3.3515 1.9571 6.3484 10 7 1.9746 1.4822 6.5515 11 6 1.6675 0.5998 5.5917 12 8 0.5862 0.0484 5.5194 13 6 2.0400 -0.7213 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7218 -1.2487 16 7 1.5518 -0.0308 -2.4454 17 6 1.4231 -0.7032 -3.6063 18 8 1.7119 -1.8799 -3.6608 19 6 0.9267 0.0086 -4.8384 20 16 0.8721 -1.1529 -6.2254 21 6 0.2745 -0.0864 -7.4942 22 1 0.0644 0.9499 -7.2742 23 6 0.0746 -0.5777 -8.7769 24 7 0.3321 -1.8404 -9.0455 25 14 -0.5583 0.5531 -10.1222 26 1 0.5905 1.1914 -10.8136 27 1 -1.3487 -0.2359 -11.1009 28 1 -1.4200 1.6029 -9.5217 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.4495 -1.4979 1.4102 33 1 2.7587 1.0463 2.1182 34 1 1.0869 0.6164 2.5525 35 1 1.9200 -1.3565 3.8032 36 1 3.5915 -0.9260 3.3685 37 1 4.6767 0.5599 5.3289 38 1 4.0740 1.8954 4.2965 39 1 3.3634 3.0331 6.1748 40 1 3.9750 1.6999 7.2046 41 1 1.3829 1.7633 7.2669 42 1 3.9330 -1.2358 -0.3588 43 1 3.9335 -1.2361 -2.1385 44 1 3.9337 0.3057 -1.2486 45 1 1.3210 0.9104 -2.4018 46 1 -0.0733 0.4008 -4.6533 47 1 1.6006 0.8308 -5.0792 48 1 0.1921 -2.1839 -9.9418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328986690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:39 Heat of formation + Delta-G solvation = -83.541515 kcal Electronic energy + Delta-G solvation = -27101.501333 eV Core-core repulsion = 23123.672918 eV Total energy + Delta-G solvation = -3977.828415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.92644 -40.85882 -38.79081 -37.43026 -36.30164 -34.78923 -34.57492 -32.52364 -31.11319 -29.88515 -29.72559 -28.13602 -27.63954 -24.81675 -23.88450 -23.58073 -21.97728 -21.58423 -21.03572 -19.81088 -18.65382 -17.88748 -17.72854 -17.27246 -17.10790 -16.87382 -16.44659 -16.39232 -15.98178 -15.68360 -15.27280 -15.05341 -14.94306 -14.71632 -14.62840 -14.56840 -14.42904 -14.08368 -13.68100 -13.58643 -13.28310 -13.15511 -13.06896 -12.93704 -12.88573 -12.72727 -12.59822 -12.51370 -12.26850 -12.08922 -11.75507 -11.61818 -11.38387 -11.13713 -10.90083 -10.37412 -10.26204 -10.12252 -9.49875 -9.41331 -8.65544 -8.33989 -6.11927 1.27481 1.42679 1.47100 1.56183 1.61005 1.66520 2.06425 2.25141 2.29642 3.00073 3.00512 3.30692 3.41008 3.63377 3.64134 3.88535 3.94635 4.04232 4.13848 4.20863 4.27476 4.31835 4.43678 4.49858 4.52171 4.55482 4.59441 4.70392 4.74149 4.76958 4.86274 4.94636 4.99548 5.03357 5.11733 5.15919 5.19420 5.42281 5.42595 5.56903 5.70401 5.96423 6.18258 6.20350 6.32139 6.52993 6.55700 7.07254 7.30442 7.54808 8.75217 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.032635 B = 0.001534 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.776388 B =18252.455117 C =18434.796971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.096 3.904 3 H 0.099 0.901 4 N -0.673 5.673 5 C 0.056 3.944 6 C 0.154 3.846 7 N -0.631 5.631 8 C 0.086 3.914 9 C 0.091 3.909 10 N -0.739 5.739 11 C 0.682 3.318 12 O -0.645 6.645 13 C 0.155 3.845 14 H 0.061 0.939 15 C -0.143 4.143 16 N -0.708 5.708 17 C 0.536 3.464 18 O -0.565 6.565 19 C -0.130 4.130 20 S -0.151 6.151 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.258 1.258 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.346 0.654 33 H 0.087 0.913 34 H 0.015 0.985 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.433 0.567 42 H 0.089 0.911 43 H 0.024 0.976 44 H 0.065 0.935 45 H 0.413 0.587 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.775 13.645 33.865 37.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.015 4.015 3 H 0.117 0.883 4 N -0.304 5.304 5 C -0.075 4.075 6 C 0.031 3.969 7 N -0.369 5.369 8 C -0.036 4.036 9 C -0.033 4.033 10 N -0.400 5.400 11 C 0.382 3.618 12 O -0.528 6.528 13 C 0.050 3.950 14 H 0.079 0.921 15 C -0.201 4.201 16 N -0.362 5.362 17 C 0.322 3.678 18 O -0.443 6.443 19 C -0.281 4.281 20 S 0.076 5.924 21 C -0.695 4.695 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.192 1.192 27 H -0.203 1.203 28 H -0.182 1.182 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.165 0.835 33 H 0.106 0.894 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.275 0.725 42 H 0.107 0.893 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.250 0.750 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.450 11.285 33.364 36.738 hybrid contribution -2.221 2.014 -0.467 3.034 sum 8.229 13.299 32.897 36.425 Atomic orbital electron populations 1.22469 0.96830 1.02188 1.02534 1.21553 0.92615 0.98368 0.88941 0.88261 1.60313 1.57459 1.09722 1.02915 1.22250 0.99403 0.95996 0.89834 1.21106 1.03722 0.90066 0.81970 1.47165 1.14740 1.46665 1.28311 1.22746 0.88975 0.94570 0.97350 1.22651 0.81601 1.00615 0.98404 1.45175 1.17994 1.45944 1.30871 1.16364 0.83719 0.80507 0.81223 1.90929 1.25886 1.57512 1.78474 1.20836 0.94939 0.96292 0.82976 0.92097 1.21953 0.94136 1.02318 1.01698 1.45772 1.67545 1.14428 1.08427 1.19995 0.76669 0.86551 0.84572 1.90692 1.50621 1.17813 1.85169 1.23380 1.05474 1.03186 0.96067 1.85585 1.86891 1.17368 1.02574 1.23216 1.51062 0.98493 0.96738 0.89926 1.26124 0.95050 0.97195 1.00747 1.70188 1.46875 1.15537 1.22171 0.84955 0.78445 0.77745 0.76837 1.19247 1.20325 1.18242 0.92202 0.91556 0.93172 0.83536 0.89439 0.96639 0.91866 0.86986 0.87971 0.88243 0.87885 0.87795 0.72473 0.89273 0.95722 0.91585 0.74977 0.87390 0.87230 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 9.00 71.98 0.65 -2.46 16 2 C 0.10 1.48 2.22 44.91 0.10 1.58 16 3 H 0.10 1.24 7.80 -2.39 -0.02 1.23 16 4 N -0.67 -9.19 5.48 -491.57 -2.70 -11.88 16 5 C 0.06 0.68 5.81 86.31 0.50 1.18 16 6 C 0.15 1.80 6.26 86.38 0.54 2.35 16 7 N -0.63 -7.42 2.96 -838.38 -2.48 -9.90 16 8 C 0.09 0.21 7.68 86.65 0.67 0.88 16 9 C 0.09 0.08 8.06 86.65 0.70 0.78 16 10 N -0.74 -7.08 6.37 -477.34 -3.04 -10.12 16 11 C 0.68 12.56 8.60 179.57 1.54 14.11 16 12 O -0.65 -19.00 17.53 -4.00 -0.07 -19.07 16 13 C 0.15 3.45 2.34 44.99 0.11 3.55 16 14 H 0.06 1.74 7.58 -2.38 -0.02 1.72 16 15 C -0.14 -3.08 9.33 71.98 0.67 -2.41 16 16 N -0.71 -17.58 4.38 -442.53 -1.94 -19.52 16 17 C 0.54 19.81 7.81 87.66 0.68 20.50 16 18 O -0.56 -26.45 15.53 -3.04 -0.05 -26.50 16 19 C -0.13 -5.15 6.16 71.24 0.44 -4.72 16 20 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 21 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.78 5.49 84.86 0.47 1.24 16 24 N -0.91 -56.36 13.22 21.65 0.29 -56.08 16 25 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 29 H 0.06 0.98 7.45 -2.39 -0.02 0.97 16 30 H 0.07 1.15 7.45 -2.38 -0.02 1.13 16 31 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 32 H 0.35 5.08 8.47 -89.69 -0.76 4.32 16 33 H 0.09 0.85 8.06 -2.39 -0.02 0.83 16 34 H 0.02 0.26 7.44 -2.38 -0.02 0.24 16 35 H 0.06 1.02 7.92 -2.38 -0.02 1.00 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.43 3.18 8.96 -92.71 -0.83 2.35 16 42 H 0.09 1.67 7.60 -2.39 -0.02 1.66 16 43 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.41 7.38 8.39 -92.71 -0.78 6.60 16 46 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 47 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 48 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -88.17 409.82 -2.79 -90.97 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -1.38 Total: 20.15 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 7.71 Total: 5.78 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -9.87 Total: -107.51 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -0.12 Total: -45.57 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -88.17 -2.79 -90.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328986690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.427 kcal (2) G-P(sol) polarization free energy of solvation -88.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds