Wall clock time and date at job start Wed Apr 1 2020 03:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47169 * 2 1 4 4 N 1.46493 * 109.47185 * 120.00389 * 2 1 3 5 5 C 1.34772 * 119.99980 * 274.99822 * 4 2 1 6 6 O 1.21290 * 120.00135 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99978 * 180.02562 * 5 4 2 8 8 S 1.81008 * 109.47103 * 179.97438 * 7 5 4 9 9 C 1.76200 * 99.99956 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99872 * 0.02562 * 9 8 7 11 11 C 1.38798 * 119.99927 * 179.97438 * 9 8 7 12 12 N 1.31629 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00078 * 180.02562 * 11 9 8 14 14 H 1.48510 * 109.46998 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47376 * 120.00052 * 13 11 9 16 16 H 1.48498 * 109.47303 * 240.00384 * 13 11 9 17 17 C 1.53003 * 109.46768 * 240.00734 * 2 1 3 18 18 H 1.09004 * 109.46972 * 299.99787 * 17 2 1 19 19 C 1.53004 * 109.47114 * 180.02562 * 17 2 1 20 20 N 1.46894 * 109.47483 * 59.99679 * 17 2 1 21 21 C 1.46902 * 110.99953 * 205.00068 * 20 17 2 22 22 C 1.52999 * 109.47112 * 180.02562 * 21 20 17 23 23 N 1.46497 * 109.47130 * 179.97438 * 22 21 20 24 24 C 1.47057 * 125.40952 * 90.00073 * 23 22 21 25 25 C 1.54105 * 103.99235 * 179.97438 * 24 23 22 26 26 N 1.47394 * 103.70056 * 0.10684 * 25 24 23 27 27 C 1.33947 * 109.21036 * 359.88525 * 26 25 24 28 28 O 1.21594 * 123.03846 * 180.09410 * 27 26 25 29 29 H 1.08997 * 109.46644 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46715 * 299.99511 * 1 2 3 31 31 H 1.09000 * 109.47124 * 59.99912 * 1 2 3 32 32 H 0.96998 * 119.99825 * 95.00000 * 4 2 1 33 33 H 1.08995 * 109.47431 * 299.99741 * 7 5 4 34 34 H 1.09006 * 109.47029 * 60.00505 * 7 5 4 35 35 H 0.96994 * 120.00253 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.46427 * 299.99736 * 19 17 2 37 37 H 1.09000 * 109.47027 * 59.99201 * 19 17 2 38 38 H 1.08993 * 109.47371 * 179.97438 * 19 17 2 39 39 H 1.00900 * 111.00343 * 328.95145 * 20 17 2 40 40 H 1.09000 * 109.47307 * 59.99747 * 21 20 17 41 41 H 1.09002 * 109.47269 * 299.99863 * 21 20 17 42 42 H 1.09000 * 109.47340 * 59.99647 * 22 21 20 43 43 H 1.09001 * 109.47326 * 300.00216 * 22 21 20 44 44 H 1.09002 * 110.54831 * 298.59477 * 24 23 22 45 45 H 1.08997 * 110.54826 * 61.25951 * 24 23 22 46 46 H 1.08996 * 110.55034 * 118.66113 * 25 24 23 47 47 H 1.09001 * 110.54910 * 241.47819 * 25 24 23 48 48 H 0.97000 * 125.37712 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8583 1.1583 2.4117 7 6 2.6501 -0.7287 3.5873 8 16 2.7116 0.4344 4.9728 9 6 3.3160 -0.6306 6.2397 10 1 3.5260 -1.6668 6.0195 11 6 3.5234 -0.1374 7.5205 12 7 3.2680 1.1257 7.7888 13 14 4.1649 -1.2663 8.8635 14 1 4.3704 -2.6285 8.3088 15 1 5.4551 -0.7407 9.3775 16 1 3.1785 -1.3273 9.9718 17 6 2.0400 -0.7211 -1.2494 18 1 1.6766 -1.7488 -1.2495 19 6 3.5700 -0.7217 -1.2491 20 7 1.5503 -0.0286 -2.4487 21 6 1.4874 -0.9436 -3.5962 22 6 0.9748 -0.1878 -4.8237 23 7 0.9127 -1.1002 -5.9682 24 6 -0.2492 -1.9204 -6.3420 25 6 0.2183 -2.6774 -7.6002 26 7 1.5995 -2.2031 -7.8000 27 6 1.9056 -1.3206 -6.8399 28 8 2.9868 -0.7692 -6.7666 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1524 33 1 1.9779 -1.5510 3.8324 34 1 3.6495 -1.1205 3.3977 35 1 3.4125 1.4702 8.6839 36 1 3.9337 0.3059 -1.2488 37 1 3.9330 -1.2358 -0.3592 38 1 3.9333 -1.2358 -2.1389 39 1 0.6526 0.3994 -2.2780 40 1 0.8111 -1.7673 -3.3676 41 1 2.4828 -1.3373 -3.8020 42 1 1.6515 0.6356 -5.0522 43 1 -0.0205 0.2063 -4.6183 44 1 -0.4955 -2.6211 -5.5442 45 1 -1.1063 -1.2874 -6.5719 46 1 0.2038 -3.7534 -7.4268 47 1 -0.4047 -2.4183 -8.4563 48 1 2.1922 -2.4846 -8.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328986693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:48 Heat of formation + Delta-G solvation = -49.569290 kcal Electronic energy + Delta-G solvation = -27107.168905 eV Core-core repulsion = 23130.813636 eV Total energy + Delta-G solvation = -3976.355268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39528 -39.66369 -37.86414 -36.72298 -35.50044 -33.89815 -32.42370 -31.48793 -30.28622 -29.48301 -28.63921 -27.54553 -25.48083 -24.09946 -23.51555 -22.88980 -20.88868 -20.36636 -20.29111 -18.15671 -17.85777 -17.20699 -16.66378 -16.60588 -16.42389 -15.81837 -15.08638 -14.96570 -14.79988 -14.69909 -14.43750 -14.30187 -14.10512 -13.87345 -13.78092 -13.41214 -13.29366 -13.08417 -12.84286 -12.67380 -12.51408 -12.37798 -12.04936 -11.94091 -11.75197 -11.48986 -11.33786 -11.06694 -11.01308 -10.78585 -10.71122 -10.57528 -9.79975 -9.77182 -9.39474 -9.11099 -9.07405 -8.94372 -8.76357 -8.22220 -6.49025 -6.21261 -3.91550 2.04650 2.73327 2.99778 3.10846 3.21898 3.27162 3.31322 3.36916 3.65416 3.81068 4.02377 4.20854 4.26304 4.34413 4.44348 4.63050 4.72577 4.80388 4.86387 4.99499 5.00151 5.08511 5.12209 5.14051 5.16199 5.28731 5.41410 5.50984 5.51644 5.64188 5.64938 5.68915 5.76701 5.89512 5.97937 6.11874 6.14776 6.20538 6.21874 6.57606 6.61384 6.72259 7.00598 7.04367 7.60438 7.71456 8.17052 8.35970 8.63082 9.24264 10.86240 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.032579 B = 0.001535 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.250699 B =18239.873842 C =18433.539477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 H 0.098 0.902 4 N -0.732 5.732 5 C 0.534 3.466 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.083 3.917 18 H 0.047 0.953 19 C -0.141 4.141 20 N -0.678 5.678 21 C 0.044 3.956 22 C 0.152 3.848 23 N -0.631 5.631 24 C 0.090 3.910 25 C 0.093 3.907 26 N -0.745 5.745 27 C 0.697 3.303 28 O -0.580 6.580 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.396 0.604 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.343 0.657 40 H 0.030 0.970 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 -10.726 -31.927 35.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.036 3.964 3 H 0.116 0.884 4 N -0.386 5.386 5 C 0.321 3.679 6 O -0.389 6.389 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.027 4.027 18 H 0.065 0.935 19 C -0.199 4.199 20 N -0.313 5.313 21 C -0.087 4.087 22 C 0.030 3.970 23 N -0.371 5.371 24 C -0.034 4.034 25 C -0.032 4.032 26 N -0.407 5.407 27 C 0.397 3.603 28 O -0.457 6.457 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.164 0.836 40 H 0.049 0.951 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -9.480 -7.955 -31.684 34.015 hybrid contribution 0.104 -3.421 0.678 3.490 sum -9.375 -11.376 -31.006 34.332 Atomic orbital electron populations 1.22263 0.95770 1.01859 1.02792 1.20946 0.93535 0.98408 0.83546 0.88415 1.45976 1.69488 1.13792 1.09354 1.20284 0.76793 0.87208 0.83664 1.90705 1.48180 1.15703 1.84344 1.23535 1.03657 1.04839 0.98392 1.85403 1.86241 1.12892 0.98772 1.22914 1.50842 0.98201 0.96408 0.90896 1.24990 0.95108 0.95529 0.97959 1.70026 1.45601 1.13205 1.21432 0.86119 0.78535 0.80126 0.80715 1.19643 1.20555 1.20585 1.21705 0.96724 0.95681 0.88586 0.93479 1.21799 0.93663 1.03114 1.01292 1.60396 1.33816 1.33076 1.04034 1.22378 1.01702 0.94070 0.90504 1.21141 1.02358 0.91061 0.82441 1.47079 1.14245 1.46551 1.29196 1.22400 0.90087 0.94365 0.96533 1.22395 0.83529 0.99592 0.97720 1.45197 1.16284 1.47256 1.31997 1.15934 0.83989 0.80175 0.80168 1.91005 1.23182 1.54882 1.76648 0.92749 0.91049 0.91962 0.76983 0.89305 0.89234 0.92240 0.91514 0.92111 0.92783 0.83580 0.95134 0.90307 0.88560 0.90203 0.90096 0.89883 0.89920 0.89886 0.72929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.25 37.16 0.34 -1.36 16 2 C 0.14 1.61 2.29 -67.93 -0.16 1.46 16 3 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 4 N -0.73 -9.49 4.38 -53.81 -0.24 -9.73 16 5 C 0.53 9.79 7.81 -10.99 -0.09 9.71 16 6 O -0.52 -11.54 15.53 5.55 0.09 -11.46 16 7 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 8 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 9 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 10 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 13 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.08 0.76 2.28 -67.71 -0.15 0.61 16 18 H 0.05 0.40 7.80 -51.93 -0.40 -0.01 16 19 C -0.14 -1.45 9.26 37.16 0.34 -1.11 16 20 N -0.68 -5.62 6.31 -106.72 -0.67 -6.29 16 21 C 0.04 0.33 5.81 -3.82 -0.02 0.31 16 22 C 0.15 1.04 6.26 -4.04 -0.03 1.02 16 23 N -0.63 -4.33 2.96 -178.81 -0.53 -4.86 16 24 C 0.09 0.26 7.67 -3.16 -0.02 0.23 16 25 C 0.09 0.19 8.08 -2.98 -0.02 0.17 16 26 N -0.74 -4.17 6.39 -64.46 -0.41 -4.58 16 27 C 0.70 6.72 8.60 -88.40 -0.76 5.96 16 28 O -0.58 -8.42 17.53 5.28 0.09 -8.33 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.48 6.21 -51.93 -0.32 0.16 16 32 H 0.40 4.07 8.39 -40.82 -0.34 3.73 16 33 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 34 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.61 7.44 -51.93 -0.39 0.23 16 38 H 0.05 0.54 7.45 -51.93 -0.39 0.16 16 39 H 0.34 2.43 6.17 -39.29 -0.24 2.19 16 40 H 0.03 0.20 8.06 -51.93 -0.42 -0.22 16 41 H 0.08 0.78 7.44 -51.93 -0.39 0.39 16 42 H 0.10 0.87 7.91 -51.93 -0.41 0.46 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 46 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 47 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 48 H 0.43 1.80 8.96 -40.82 -0.37 1.44 16 LS Contribution 407.17 15.07 6.14 6.14 Total: -1.00 -38.41 407.17 -10.01 -48.42 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.83 Total: 2.40 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.14 Total: 1.16 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -1.12 Total: -50.93 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.18 Total: -19.78 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.41 -10.01 -48.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328986693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.149 kcal (2) G-P(sol) polarization free energy of solvation -38.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds